Volume 40; Issue 2

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Nucleic Acids Research
Volume 40; Issue 2

Nucleic Acids Research

Volume 40; Issue 2

1

Human telomerase acts as a hTR-independent reverse transcriptase in mitochondria

Sharma, N. K., Reyes, A., Green, P., Caron, M. J., Bonini, M. G., Gordon, D. M., Holt, I. J., Santos, J. H.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

2

Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells

Cheng, C., Gerstein, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 11.00 MB

english, 2012

3

Enhanced analysis of real-time PCR data by using a variable efficiency model: FPK-PCR

Lievens, A., Van Aelst, S., Van den Bulcke, M., Goetghebeur, E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 352 KB

english, 2012

4

The structural characterization of a prophage-encoded extracellular DNase from Streptococcus pyogenes

Korczynska, J. E., Turkenburg, J. P., Taylor, E. J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.60 MB

english, 2012

5

GenomeView: a next-generation genome browser

Abeel, T., Van Parys, T., Saeys, Y., Galagan, J., Van de Peer, Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.82 MB

english, 2012

6

Phosphorylation of bamboo mosaic virus satellite RNA (satBaMV)-encoded protein P20 downregulates the formation of satBaMV-P20 ribonucleoprotein complex

Vijayapalani, P., Chen, J. C.-F., Liou, M.-R., Chen, H.-C., Hsu, Y.-H., Lin, N.-S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.35 MB

english, 2012

7

TFIIH is an elongation factor of RNA polymerase I

Assfalg, R., Lebedev, A., Gonzalez, O. G., Schelling, A., Koch, S., Iben, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 388 KB

english, 2012

8

IRES-mediated translation of cellular messenger RNA operates in eIF2 - independent manner during stress

Thakor, N., Holcik, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.97 MB

english, 2012

9

Safeguarding genome integrity: the checkpoint kinases ATR, CHK1 and WEE1 restrain CDK activity during normal DNA replication

Sorensen, C. S., Syljuasen, R. G.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 480 KB

english, 2012

10

MiR-145 directly targets p70S6K1 in cancer cells to inhibit tumor growth and angiogenesis

Xu, Q., Liu, L.-Z., Qian, X., Chen, Q., Jiang, Y., Li, D., Lai, L., Jiang, B.-H.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 9.05 MB

english, 2012

11

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

12

i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets

Proost, S., Fostier, J., De Witte, D., Dhoedt, B., Demeester, P., Van de Peer, Y., Vandepoele, K.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.61 MB

english, 2012

13

Predicting coaxial helical stacking in RNA junctions

Laing, C., Wen, D., Wang, J. T. L., Schlick, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.25 MB

english, 2012

14

Creating highly specific nucleases by fusion of active restriction endonucleases and catalytically inactive homing endonucleases

Fonfara, I., Curth, U., Pingoud, A., Wende, W.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.56 MB

english, 2012

15

Single-nucleotide base excision repair DNA polymerase activity in C. elegans in the absence of DNA polymerase

Asagoshi, K., Lehmann, W., Braithwaite, E. K., Santana-Santos, L., Prasad, R., Freedman, J. H., Van Houten, B., Wilson, S. H.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.29 MB

english, 2012

16

Retroviral GAG proteins recruit AGO2 on viral RNAs without affecting RNA accumulation and translation

Bouttier, M., Saumet, A., Peter, M., Courgnaud, V., Schmidt, U., Cazevieille, C., Bertrand, E., Lecellier, C.-H.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.07 MB

english, 2012

17

ATP-regulated interactions between P1 ParA, ParB and non-specific DNA that are stabilized by the plasmid partition site, parS

Havey, J. C., Vecchiarelli, A. G., Funnell, B. E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.77 MB

english, 2012

18

An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription

Knouf, E. C., Garg, K., Arroyo, J. D., Correa, Y., Sarkar, D., Parkin, R. K., Wurz, K., O'Briant, K. C., Godwin, A. K., Urban, N. D., Ruzzo, W. L., Gentleman, R., Drescher, C. W., Swisher, E. M., Tewa

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 273 KB

english, 2012

19

MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis

Kang, D. D., Sibille, E., Kaminski, N., Tseng, G. C.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.79 MB

english, 2012

20

A dual role of BRCA1 in two distinct homologous recombination mediated repair in response to replication arrest

Feng, Z., Zhang, J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.67 MB

english, 2012

21

REV1 and polymerase facilitate homologous recombination repair

Sharma, S., Hicks, J. K., Chute, C. L., Brennan, J. R., Ahn, J.-Y., Glover, T. W., Canman, C. E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.48 MB

english, 2012

22

A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3

Chaurasiya, K. R., Geertsema, H., Cristofari, G., Darlix, J.-L., Williams, M. C.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.41 MB

english, 2012

23

Subscriptions

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 49 KB

english, 2012

24

Hepato-specific microRNA-122 facilitates accumulation of newly synthesized miRNA through regulating PRKRA

Li, S., Zhu, J., Fu, H., Wan, J., Hu, Z., Liu, S., Li, J., Tie, Y., Xing, R., Zhu, J., Sun, Z., Zheng, X.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

25

The tail-module of yeast Mediator complex is required for telomere heterochromatin maintenance

Peng, J., Zhou, J.-Q.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

26

Untwisting of the DNA helix stimulates the endonuclease activity of Bacillus subtilis Nth at AP sites

Collier, C., Machon, C., Briggs, G. S., Smits, W. K., Soultanas, P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.10 MB

english, 2012

27

Regulation of u-PAR gene expression by H2A.Z is modulated by the MEK-ERK/AP-1 pathway

Chauhan, S., Boyd, D. D.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.26 MB

english, 2012

28

Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability

Meisenberg, C., Tait, P. S., Dianova, I. I., Wright, K., Edelmann, M. J., Ternette, N., Tasaki, T., Kessler, B. M., Parsons, J. L., Tae Kwon, Y., Dianov, G. L.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.76 MB

english, 2012

29

RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA

Rajeswaran, R., Pooggin, M. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.80 MB

english, 2012

30

Saccharomyces cerevisiae Ngl3p is an active 3'-5' exonuclease with a specificity towards poly-A RNA reminiscent of cellular deadenylases

Feddersen, A., Dedic, E., Poulsen, E. G., Schmid, M., Van, L. B., Jensen, T. H., Brodersen, D. E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

31

Regulation of conditional gene expression by coupled transcription repression and RNA degradation

Lavoie, M., Ge, D., Abou Elela, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.90 MB

english, 2012

32

Nucleic Acids Research: VOLUME 40 ISSUE 2 2012

Journal:

Nucleic Acids Research

Year:

2012

File:

PDF, 648 KB

2012

33

ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex

Mockel, C., Lammens, K., Schele, A., Hopfner, K.-P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 16.21 MB

english, 2012

34

Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA

Malarkey, C. S., Bestwick, M., Kuhlwilm, J. E., Shadel, G. S., Churchill, M. E. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.53 MB

english, 2012

35

Avoiding cytotoxicity of transposases by dose-controlled mRNA delivery

Galla, M., Schambach, A., Falk, C. S., Maetzig, T., Kuehle, J., Lange, K., Zychlinski, D., Heinz, N., Brugman, M. H., Gohring, G., Izsvak, Z., Ivics, Z., Baum, C.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 200 KB

english, 2012

36

Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family

Das, U., Smith, P., Shuman, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.78 MB

english, 2012

37

Polymerization and nucleic acid-binding properties of human L1 ORF1 protein

Callahan, K. E., Hickman, A. B., Jones, C. E., Ghirlando, R., Furano, A. V.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.92 MB

english, 2012

38

The human histone chaperone sNASP interacts with linker and core histones through distinct mechanisms

Wang, H., Ge, Z., Walsh, S. T. R., Parthun, M. R.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.37 MB

english, 2012

39

Direct structural analysis of modified RNA by fluorescent in-line probing

Strauss, B., Nierth, A., Singer, M., Jaschke, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.51 MB

english, 2012

40

Function and disruption of DNA Methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation

Rajavelu, A., Jurkowska, R. Z., Fritz, J., Jeltsch, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.40 MB

english, 2012

41

Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity

Wongsurawat, T., Jenjaroenpun, P., Kwoh, C. K., Kuznetsov, V.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 21.84 MB

english, 2012