Volume 40; Issue 6

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Nucleic Acids Research
Volume 40; Issue 6

Nucleic Acids Research

Volume 40; Issue 6

1

Highly specific unnatural base pair systems as a third base pair for PCR amplification

Yamashige, R., Kimoto, M., Takezawa, Y., Sato, A., Mitsui, T., Yokoyama, S., Hirao, I.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.04 MB

english, 2012

2

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus

Deng, L., Kenchappa, C. S., Peng, X., She, Q., Garrett, R. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.07 MB

english, 2012

3

Recognition of methylated DNA through methyl-CpG binding domain proteins

Zou, X., Ma, W., Solov'yov, I. A., Chipot, C., Schulten, K.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.56 MB

english, 2012

4

A novel zinc-finger nuclease platform with a sequence-specific cleavage module

Schierling, B., Dannemann, N., Gabsalilow, L., Wende, W., Cathomen, T., Pingoud, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.20 MB

english, 2012

5

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

Kalyna, M., Simpson, C. G., Syed, N. H., Lewandowska, D., Marquez, Y., Kusenda, B., Marshall, J., Fuller, J., Cardle, L., McNicol, J., Dinh, H. Q., Barta, A., Brown, J. W. S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 692 KB

english, 2012

6

Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells

Kar, A., Saha, D., Purohit, G., Singh, A., Kumar, P., Yadav, V. K., Kumar, P., Thakur, R. K., Chowdhury, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.16 MB

english, 2012

7

Evolutionary pressures on simple sequence repeats in prokaryotic coding regions

Lin, W.-H., Kussell, E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 983 KB

english, 2012

8

Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation

Soto-Rifo, R., Limousin, T., Rubilar, P. S., Ricci, E. P., Decimo, D., Moncorge, O., Trabaud, M.-A., Andre, P., Cimarelli, A., Ohlmann, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.71 MB

english, 2012

9

Lack of recognition by global-genome nucleotide excision repair accounts for the high mutagenicity and persistence of aristolactam-DNA adducts

Sidorenko, V. S., Yeo, J.-E., Bonala, R. R., Johnson, F., Scharer, O. D., Grollman, A. P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.74 MB

english, 2012

10

Promiscuous DNA synthesis by human DNA polymerase

Hogg, M., Sauer-Eriksson, A. E., Johansson, E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 11.56 MB

english, 2012

11

Mre11 modulates the fidelity of fusion between short telomeres in human cells

Tankimanova, M., Capper, R., Letsolo, B. T., Rowson, J., Jones, R. E., Britt-Compton, B., Taylor, A. M. R., Baird, D. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.43 MB

english, 2012

12

Naphthyridine tetramer with a pre-organized structure for 1:1 binding to a CGG/CGG sequence

Dohno, C., Kohyama, I., Hong, C., Nakatani, K.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.13 MB

english, 2012

13

The PolyA tail length of yeast histone mRNAs varies during the cell cycle and is influenced by Sen1p and Rrp6p

Beggs, S., James, T. C., Bond, U.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.34 MB

english, 2012

14

An integer linear programming approach for finding deregulated subgraphs in regulatory networks

Backes, C., Rurainski, A., Klau, G. W., Muller, O., Stockel, D., Gerasch, A., Kuntzer, J., Maisel, D., Ludwig, N., Hein, M., Keller, A., Burtscher, H., Kaufmann, M., Meese, E., Lenhof, H.-P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.36 MB

english, 2012

15

An exogenous chloroplast genome for complex sequence manipulation in algae

O'Neill, B. M., Mikkelson, K. L., Gutierrez, N. M., Cunningham, J. L., Wolff, K. L., Szyjka, S. J., Yohn, C. B., Redding, K. E., Mendez, M. J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.09 MB

english, 2012

16

Functional redundancy between DNA ligases I and III in DNA replication in vertebrate cells

Arakawa, H., Bednar, T., Wang, M., Paul, K., Mladenov, E., Bencsik-Theilen, A. A., Iliakis, G.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 9.31 MB

english, 2012

17

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs

Mahmood, K., Webb, G. I., Song, J., Whisstock, J. C., Konagurthu, A. S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 700 KB

english, 2012

18

Structural, energetic and dynamic properties of guanine(C8)-thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair

Ding, S., Kropachev, K., Cai, Y., Kolbanovskiy, M., Durandina, S. A., Liu, Z., Shafirovich, V., Broyde, S., Geacintov, N. E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 14.10 MB

english, 2012

19

In vitro experimental system for analysis of transcription-translation coupling

Castro-Roa, D., Zenkin, N.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.66 MB

english, 2012

20

Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events

Gellert, P., Teranishi, M., Jenniches, K., De Gaspari, P., John, D., grosse Kreymborg, K., Braun, T., Uchida, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 9.16 MB

english, 2012

21

5'-Triphosphate-RNA-independent activation of RIG-I via RNA aptamer with enhanced antiviral activity

Hwang, S.-Y., Sun, H.-Y., Lee, K.-H., Oh, B.-H., Cha, Y. J., Kim, B. H., Yoo, J.-Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.72 MB

english, 2012

22

A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription

Murray, S. C., Serra Barros, A., Brown, D. A., Dudek, P., Ayling, J., Mellor, J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

23

SCOREM: statistical consolidation of redundant expression measures

Schneider, S., Smith, T., Hansen, U.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 441 KB

english, 2012

24

Analysis of the RNA chaperoning activity of the hepatitis C virus core protein on the conserved 3'X region of the viral genome

Sharma, K. K., de Rocquigny, H., Darlix, J. L., Lavergne, J.-P., Penin, F., Lessinger, J.-M., Mely, Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

25

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

26

Hobbes: optimized gram-based methods for efficient read alignment

Ahmadi, A., Behm, A., Honnalli, N., Li, C., Weng, L., Xie, X.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 377 KB

english, 2012

27

Transcription co-activator SAYP mediates the action of STAT activator

Panov, V. V., Kuzmina, J. L., Doronin, S. A., Kopantseva, M. R., Nabirochkina, E. N., Georgieva, S. G., Vorobyeva, N. E., Shidlovskii, Y. V.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.25 MB

english, 2012

28

Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs

Makarov, E. M., Owen, N., Bottrill, A., Makarova, O. V.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.41 MB

english, 2012

29

Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts

Lukin, M., Zaliznyak, T., Johnson, F., de los Santos, C.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.91 MB

english, 2012

30

GADD45 inhibition of DNMT1 dependent DNA methylation during homology directed DNA repair

Lee, B., Morano, A., Porcellini, A., Muller, M. T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.70 MB

english, 2012

31

The allele distribution in next-generation sequencing data sets is accurately described as the result of a stochastic branching process

Heinrich, V., Stange, J., Dickhaus, T., Imkeller, P., Kruger, U., Bauer, S., Mundlos, S., Robinson, P. N., Hecht, J., Krawitz, P. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 390 KB

english, 2012

32

Nucleic Acids Research: VOLUME 40 ISSUE 6 2012

Journal:

Nucleic Acids Research

Year:

2012

File:

PDF, 404 KB

2012

33

mTOR signaling regulates the processing of pre-rRNA in human cells

Iadevaia, V., Zhang, Z., Jan, E., Proud, C. G.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.68 MB

english, 2012

34

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets

Kim, T., Tyndel, M. S., Huang, H., Sidhu, S. S., Bader, G. D., Gfeller, D., Kim, P. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.46 MB

english, 2012

35

Neuron-specific ELAV/Hu proteins suppress HuR mRNA during neuronal differentiation by alternative polyadenylation

Mansfield, K. D., Keene, J. D.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 5.58 MB

english, 2012

36

Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein

Kobayashi, K., Kawabata, M., Hisano, K., Kazama, T., Matsuoka, K., Sugita, M., Nakamura, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.02 MB

english, 2012

37

The N-terminal domains of TRF1 and TRF2 regulate their ability to condense telomeric DNA

Poulet, A., Pisano, S., Faivre-Moskalenko, C., Pei, B., Tauran, Y., Haftek-Terreau, Z., Brunet, F., Le Bihan, Y.-V., Ledu, M.-H., Montel, F., Hugo, N., Amiard, S., Argoul, F., Chaboud, A., Gilson, E.,

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.57 MB

english, 2012

38

TDP-43 regulates global translational yield by splicing of exon junction complex component SKAR

Fiesel, F. C., Weber, S. S., Supper, J., Zell, A., Kahle, P. J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.16 MB

english, 2012

39

Gene network inference and visualization tools for biologists: application to new human transcriptome datasets

Hurley, D., Araki, H., Tamada, Y., Dunmore, B., Sanders, D., Humphreys, S., Affara, M., Imoto, S., Yasuda, K., Tomiyasu, Y., Tashiro, K., Savoie, C., Cho, V., Smith, S., Kuhara, S., Miyano, S., Charno

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 16.43 MB

english, 2012

40

Subscriptions

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 49 KB

english, 2012

41

A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation

Korolev, N., Berezhnoy, N. V., Eom, K. D., Tam, J. P., Nordenskiold, L., Korolev, N., Berezhnoy, N., Kee Dong, E., Tam, J. P., Nordenskiold, L.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.51 MB

english, 2012

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