Volume 40; Issue 8

Main
Nucleic Acids Research
Volume 40; Issue 8

Nucleic Acids Research

Volume 40; Issue 8

1

B-DNA structure is intrinsically polymorphic: even at the level of base pair positions

Maehigashi, T., Hsiao, C., Kruger Woods, K., Moulaei, T., Hud, N. V., Dean Williams, L.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.42 MB

english, 2012

2

Human box C/D snoRNA processing conservation across multiple cell types

Scott, M. S., Ono, M., Yamada, K., Endo, A., Barton, G. J., Lamond, A. I.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 12.31 MB

english, 2012

3

Determinants of mRNA recognition and translation regulation by Lin28

Lei, X.-X., Xu, J., Ma, W., Qiao, C., Newman, M. A., Hammond, S. M., Huang, Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.32 MB

english, 2012

4

Gene targeting to the ROSA26 locus directed by engineered zinc finger nucleases

Perez-Pinera, P., Ousterout, D. G., Brown, M. T., Gersbach, C. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.09 MB

english, 2012

5

SLiCE: a novel bacterial cell extract-based DNA cloning method

Zhang, Y., Werling, U., Edelmann, W.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.38 MB

english, 2012

6

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Prieto, A. I., Kahramanoglou, C., Ali, R. M., Fraser, G. M., Seshasayee, A. S. N., Luscombe, N. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.23 MB

english, 2012

7

Expression optimization and synthetic gene networks in cell-free systems

Karig, D. K., Iyer, S., Simpson, M. L., Doktycz, M. J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.76 MB

english, 2012

8

Flp and Cre expressed from Flp-2A-Cre and Flp-IRES-Cre transcription units mediate the highest level of dual recombinase-mediated cassette exchange

Anderson, R. P., Voziyanova, E., Voziyanov, Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.25 MB

english, 2012

9

MicroRNA-1 is a candidate tumor suppressor and prognostic marker in human prostate cancer

Hudson, R. S., Yi, M., Esposito, D., Watkins, S. K., Hurwitz, A. A., Yfantis, H. G., Lee, D. H., Borin, J. F., Naslund, M. J., Alexander, R. B., Dorsey, T. H., Stephens, R. M., Croce, C. M., Ambs, S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.57 MB

english, 2012

10

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression

Westendorp, B., Mokry, M., Groot Koerkamp, M. J. A., Holstege, F. C. P., Cuppen, E., de Bruin, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 939 KB

english, 2012

11

Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker

Heap, J. T., Ehsaan, M., Cooksley, C. M., Ng, Y.-K., Cartman, S. T., Winzer, K., Minton, N. P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.01 MB

english, 2012

12

Human immunodeficiency virus-1 Tat activates NF- B via physical interaction with I B- and p65

Fiume, G., Vecchio, E., De Laurentiis, A., Trimboli, F., Palmieri, C., Pisano, A., Falcone, C., Pontoriero, M., Rossi, A., Scialdone, A., Fasanella Masci, F., Scala, G., Quinto, I.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 9.18 MB

english, 2012

13

Concerted nicking of donor and chromosomal acceptor DNA promotes homology-directed gene targeting in human cells

Goncalves, M. A. F. V., van Nierop, G. P., Holkers, M., de Vries, A. A. F.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.97 MB

english, 2012

14

Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins

Gurskaya, N. G., Staroverov, D. B., Zhang, L., Fradkov, A. F., Markina, N. M., Pereverzev, A. P., Lukyanov, K. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.08 MB

english, 2012

15

Subscriptions

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 50 KB

english, 2012

16

Dissecting the protein-RNA interface: the role of protein surface shapes and RNA secondary structures in protein-RNA recognition

Iwakiri, J., Tateishi, H., Chakraborty, A., Patil, P., Kenmochi, N.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.25 MB

english, 2012

17

Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activity

Wyszomirski, K. H., Curth, U., Alves, J., Mackeldanz, P., Moncke-Buchner, E., Schutkowski, M., Kruger, D. H., Reuter, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.62 MB

english, 2012

18

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

Shen, S., Park, J. W., Huang, J., Dittmar, K. A., Lu, Z.-x., Zhou, Q., Carstens, R. P., Xing, Y.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.86 MB

english, 2012

19

Nucleic Acids Research: VOLUME 40 ISSUE 8 2012

Journal:

Nucleic Acids Research

Year:

2012

File:

PDF, 472 KB

2012

20

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion

Little, G. H., Noushmehr, H., Baniwal, S. K., Berman, B. P., Coetzee, G. A., Frenkel, B.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.29 MB

english, 2012

21

A potent 2'-O-methylated RNA-based microRNA inhibitor with unique secondary structures

Haraguchi, T., Nakano, H., Tagawa, T., Ohki, T., Ueno, Y., Yoshida, T., Iba, H.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.13 MB

english, 2012

22

Utp23p is required for dissociation of snR30 small nucleolar RNP from preribosomal particles

Hoareau-Aveilla, C., Fayet-Lebaron, E., Jady, B. E., Henras, A. K., Kiss, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.42 MB

english, 2012

23

Differential effects of hnRNP D/AUF1 isoforms on HIV-1 gene expression

Lund, N., Milev, M. P., Wong, R., Sanmuganantham, T., Woolaway, K., Chabot, B., Abou Elela, S., Mouland, A. J., Cochrane, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.32 MB

english, 2012

24

Cdx2 homeoprotein inhibits non-homologous end joining in colon cancer but not in leukemia cells

Renouf, B., Soret, C., Saandi, T., Delalande, F., Martin, E., Vanier, M., Duluc, I., Gross, I., Freund, J.-N., Domon-Dell, C.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.69 MB

english, 2012

25

A powerful test for multiple rare variants association studies that incorporates sequencing qualities

Daye, Z. J., Li, H., Wei, Z.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 482 KB

english, 2012

26

Normalized Affymetrix expression data are biased by G-quadruplex formation

Shanahan, H. P., Memon, F. N., Upton, G. J. G., Harrison, A. P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.89 MB

english, 2012

27

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

Frohlich, K. S., Papenfort, K., Berger, A. A., Vogel, J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.96 MB

english, 2012

28

Structural changes of an abasic site in duplex DNA affect noncovalent binding of the spin label c

Shelke, S. A., Sigurdsson, S. T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.26 MB

english, 2012

29

Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells

Vella, P., Barozzi, I., Cuomo, A., Bonaldi, T., Pasini, D.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.28 MB

english, 2012

30

Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences

Ton-Hoang, B., Siguier, P., Quentin, Y., Onillon, S., Marty, B., Fichant, G., Chandler, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.53 MB

english, 2012

31

Role of polynucleotide kinase/phosphatase in mitochondrial DNA repair

Tahbaz, N., Subedi, S., Weinfeld, M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 11.18 MB

english, 2012

32

A non-canonical E-box within the MyoD core enhancer is necessary for circadian expression in skeletal muscle

Zhang, X., Patel, S. P., McCarthy, J. J., Rabchevsky, A. G., Goldhamer, D. J., Esser, K. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 642 KB

english, 2012

33

Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication

Lopez, V., Martinez-Robles, M.-L., Hernandez, P., Krimer, D. B., Schvartzman, J. B.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.87 MB

english, 2012

34

MRE11 and RAD50, but not NBS1, are essential for gene targeting in the moss Physcomitrella patens

Kamisugi, Y., Schaefer, D. G., Kozak, J., Charlot, F., Vrielynck, N., Hola, M., Angelis, K. J., Cuming, A. C., Nogue, F.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.77 MB

english, 2012

35

Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase

Grant, T. D., Snell, E. H., Luft, J. R., Quartley, E., Corretore, S., Wolfley, J. R., Elizabeth Snell, M., Hadd, A., Perona, J. J., Phizicky, E. M., Grayhack, E. J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.36 MB

english, 2012

36

Identification of CTCF as a master regulator of the clustered protocadherin genes

Golan-Mashiach, M., Grunspan, M., Emmanuel, R., Gibbs-Bar, L., Dikstein, R., Shapiro, E.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.06 MB

english, 2012

37

Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity

Freudenberg, J. M., Ghosh, S., Lackford, B. L., Yellaboina, S., Zheng, X., Li, R., Cuddapah, S., Wade, P. A., Hu, G., Jothi, R.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.09 MB

english, 2012

38

Nematode-specific tRNAs that decode an alternative genetic code for leucine

Hamashima, K., Fujishima, K., Masuda, T., Sugahara, J., Tomita, M., Kanai, A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 4.36 MB

english, 2012

39

Gli2 and MEF2C activate each other's expression and function synergistically during cardiomyogenesis in vitro

Voronova, A., Al Madhoun, A., Fischer, A., Shelton, M., Karamboulas, C., Skerjanc, I. S.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.98 MB

english, 2012

40

Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility

Lim, C. J., Whang, Y. R., Kenney, L. J., Yan, J.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.80 MB

english, 2012

41

Transcription initiation factor DksA has diverse effects on RNA chain elongation

Furman, R., Sevostyanova, A., Artsimovitch, I.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.47 MB

english, 2012

42

Expression determinants of mammalian argonaute proteins in mediating gene silencing

Valdmanis, P. N., Gu, S., Schuermann, N., Sethupathy, P., Grimm, D., Kay, M. A.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

43

Transcription activation by the siderophore sensor Btr is mediated by ligand-dependent stimulation of promoter clearance

Gaballa, A., MacLellan, S., Helmann, J. D.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

44

Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method

Carrascosa, L. G., Gomez-Montes, S., Avino, A., Nadal, A., Pla, M., Eritja, R., Lechuga, L. M.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.62 MB

english, 2012

45

Rad52 SUMOylation affects the efficiency of the DNA repair

Altmannova, V., Eckert-Boulet, N., Arneric, M., Kolesar, P., Chaloupkova, R., Damborsky, J., Sung, P., Zhao, X., Lisby, M., Krejci, L., Colavito, S., Macris-Kiss, M., Seong, C., Gleeson, O., Greene, E

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 33 KB

english, 2012