Volume 41; Issue 13

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Nucleic Acids Research
Volume 41; Issue 13

Nucleic Acids Research

Volume 41; Issue 13

1

PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data

Zeng, F., Jiang, R., Chen, T.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 10.52 MB

english, 2013

2

Quantitative and simultaneous translational control of distinct mammalian mRNAs

Endo, K., Stapleton, J. A., Hayashi, K., Saito, H., Inoue, T.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

3

Synthetic mammalian trigger-controlled bipartite transcription factors

Folcher, M., Xie, M., Spinnler, A., Fussenegger, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 792 KB

english, 2013

4

Crystal structure and functional insights into uracil-DNA glycosylase inhibition by phage 29 DNA mimic protein p56

Banos-Sanz, J. I., Mojardin, L., Sanz-Aparicio, J., Lazaro, J. M., Villar, L., Serrano-Heras, G., Gonzalez, B., Salas, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 11.68 MB

english, 2013

5

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

Hahn, C., Bachmann, L., Chevreux, B.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 278 KB

english, 2013

6

The effect of LacI autoregulation on the performance of the lactose utilization system in Escherichia coli

Semsey, S., Jauffred, L., Csiszovszki, Z., Erdossy, J., Steger, V., Hansen, S., Krishna, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.52 MB

english, 2013

7

Red5 and three nuclear pore components are essential for efficient suppression of specific mRNAs during vegetative growth of fission yeast

Sugiyama, T., Wanatabe, N., Kitahata, E., Tani, T., Sugioka-Sugiyama, R.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.77 MB

english, 2013

8

Nucleic Acids Research: VOLUME 41 ISSUE 13 2013

Journal:

Nucleic Acids Research

Year:

2013

File:

PDF, 495 KB

2013

9

Human mitochondrial disease-like symptoms caused by a reduced tRNA aminoacylation activity in flies

Guitart, T., Picchioni, D., Pineyro, D., Ribas de Pouplana, L.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 10.38 MB

english, 2013

10

r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data

Thongjuea, S., Stadhouders, R., Grosveld, F. G., Soler, E., Lenhard, B.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.31 MB

english, 2013

11

A concept of eliminating nonhomologous recombination for scalable and safe AAV vector generation for human gene therapy

Dong, B., Moore, A. R., Dai, J., Roberts, S., Chu, K., Kapranov, P., Moss, B., Xiao, W.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.57 MB

english, 2013

12

The structural basis of actinomycin D-binding induces nucleotide flipping out, a sharp bend and a left-handed twist in CGG triplet repeats

Lo, Y.-S., Tseng, W.-H., Chuang, C.-Y., Hou, M.-H.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.57 MB

english, 2013

13

Single-molecule study of the CUG repeat-MBNL1 interaction and its inhibition by small molecules

Haghighat Jahromi, A., Honda, M., Zimmerman, S. C., Spies, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 554 KB

english, 2013

14

The mTERF protein MOC1 terminates mitochondrial DNA transcription in the unicellular green alga Chlamydomonas reinhardtii

Wobbe, L., Nixon, P. J.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.42 MB

english, 2013

15

The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability

Gupta, S. K., Kosti, I., Plaut, G., Pivko, A., Tkacz, I. D., Cohen-Chalamish, S., Biswas, D. K., Wachtel, C., Waldman Ben-Asher, H., Carmi, S., Glaser, F., Mandel-Gutfreund, Y., Michaeli, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 9.26 MB

english, 2013

16

The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria

Haili, N., Arnal, N., Quadrado, M., Amiar, S., Tcherkez, G., Dahan, J., Briozzo, P., Colas des Francs-Small, C., Vrielynck, N., Mireau, H.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 4.26 MB

english, 2013

17

Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing

Lee, H. Y., Zhou, K., Smith, A. M., Noland, C. L., Doudna, J. A.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 4.07 MB

english, 2013

18

Plant nonsense-mediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex

Nyiko, T., Kerenyi, F., Szabadkai, L., Benkovics, A. H., Major, P., Sonkoly, B., Merai, Z., Barta, E., Niemiec, E., Kufel, J., Silhavy, D.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.69 MB

english, 2013

19

Identification of the nature of reading frame transitions observed in prokaryotic genomes

Antonov, I., Coakley, A., Atkins, J. F., Baranov, P. V., Borodovsky, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

20

Polycomb recruitment attenuates retinoic acid-induced transcription of the bivalent NR2F1 gene

Laursen, K. B., Mongan, N. P., Zhuang, Y., Ng, M. M., Benoit, Y. D., Gudas, L. J.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 5.25 MB

english, 2013

21

The Impact of Trans-Regulation on the Evolutionary Rates of Metazoan Proteins

Chen, Y.-C., Cheng, J.-H., Tsai, Z. T.-Y., Tsai, H.-K., Chuang, T.-J.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.56 MB

english, 2013

22

FANCD2 regulates BLM complex functions independently of FANCI to promote replication fork recovery

Chaudhury, I., Sareen, A., Raghunandan, M., Sobeck, A.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.55 MB

english, 2013

23

Life without tRNAArg-adenosine deaminase TadA: evolutionary consequences of decoding the four CGN codons as arginine in Mycoplasmas and other Mollicutes

Yokobori, S.-i., Kitamura, A., Grosjean, H., Bessho, Y.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 11.55 MB

english, 2013

24

In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter

Makela, J., Kandhavelu, M., Oliveira, S. M. D., Chandraseelan, J. G., Lloyd-Price, J., Peltonen, J., Yli-Harja, O., Ribeiro, A. S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 754 KB

english, 2013

25

Regulation of the androgen receptor by SET9-mediated methylation

Gaughan, L., Stockley, J., Wang, N., McCracken, S. R. C., Treumann, A., Armstrong, K., Shaheen, F., Watt, K., McEwan, I. J., Wang, C., Pestell, R. G., Robson, C. N.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 170 KB

english, 2013

26

Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides

Zhou, Y., Kierzek, E., Loo, Z. P., Antonio, M., Yau, Y. H., Chuah, Y. W., Geifman-Shochat, S., Kierzek, R., Chen, G.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.19 MB

english, 2013

27

IGF2BP1 promotes mesenchymal cell properties and migration of tumor-derived cells by enhancing the expression of LEF1 and SNAI2 (SLUG)

Zirkel, A., Lederer, M., Stohr, N., Pazaitis, N., Huttelmaier, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 18.68 MB

english, 2013

28

4-vinyl-substituted pyrimidine nucleosides exhibit the efficient and selective formation of interstrand cross-links with RNA and duplex DNA

Nishimoto, A., Jitsuzaki, D., Onizuka, K., Taniguchi, Y., Nagatsugi, F., Sasaki, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 927 KB

english, 2013

29

Activation of a human chromosomal replication origin by protein tethering

Chen, X., Liu, G., Leffak, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 513 KB

english, 2013

30

Subscriptions

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 49 KB

english, 2013

31

Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA

Liu, S., Wang, J., Su, Y., Guerrero, C., Zeng, Y., Mitra, D., Brooks, P. J., Fisher, D. E., Song, H., Wang, Y.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 250 KB

english, 2013

32

Tertiary structure of bacterial selenocysteine tRNA

Itoh, Y., Sekine, S.-i., Suetsugu, S., Yokoyama, S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 15.33 MB

english, 2013

33

Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1

Pham, T.-H., Minderjahn, J., Schmidl, C., Hoffmeister, H., Schmidhofer, S., Chen, W., Langst, G., Benner, C., Rehli, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.84 MB

english, 2013

34

The HIV-2 Rev-response element: determining secondary structure and defining folding intermediates

Lusvarghi, S., Sztuba-Solinska, J., Purzycka, K. J., Pauly, G. T., Rausch, J. W., Grice, S. F. J. L.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 10.23 MB

english, 2013

35

Cell type specificity and structural determinants of IRES activity from the 5' leaders of different HIV-1 transcripts

Plank, T.-D. M., Whitehurst, J. T., Kieft, J. S.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 5.27 MB

english, 2013

36

Nucleic Acids Research - Editorial Board

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 58 KB

english, 2013

37

Control of DNA minor groove width and Fis protein binding by the purine 2-amino group

Hancock, S. P., Ghane, T., Cascio, D., Rohs, R., Di Felice, R., Johnson, R. C.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 7.41 MB

english, 2013

38

Real-time solution measurement of RAD51- and RecA-mediated strand assimilation without background annealing

Budke, B., Chan, Y.-L., Bishop, D. K., Connell, P. P.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.53 MB

english, 2013

39

Caffeine suppresses homologous recombination through interference with RAD51-mediated joint molecule formation

Zelensky, A. N., Sanchez, H., Ristic, D., Vidic, I., van Rossum-Fikkert, S. E., Essers, J., Wyman, C., Kanaar, R.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.64 MB

english, 2013

40

The helicase FBH1 is tightly regulated by PCNA via CRL4(Cdt2)-mediated proteolysis in human cells

Bacquin, A., Pouvelle, C., Siaud, N., Perderiset, M., Salome-Desnoulez, S., Tellier-Lebegue, C., Lopez, B., Charbonnier, J.-B., Kannouche, P. L.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 7.29 MB

english, 2013

41

Tel1 and Rad51 are involved in the maintenance of telomeres with capping deficiency

Di Domenico, E. G., Mattarocci, S., Cimino-Reale, G., Parisi, P., Cifani, N., D'Ambrosio, E., Zakian, V. A., Ascenzioni, F.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

42

Real-time detection of DNA topological changes with a fluorescently labeled cruciform

Jude, K. M., Hartland, A., Berger, J. M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 3.77 MB

english, 2013

43

The proto-oncoprotein FBI-1 interacts with MBD3 to recruit the Mi-2/NuRD-HDAC complex and BCoR and to silence p21WAF/CDKN1A by DNA methylation

Choi, W.-I., Jeon, B.-N., Yoon, J.-H., Koh, D.-I., Kim, M.-H., Yu, M.-Y., Lee, K.-M., Kim, Y., Kim, K., Hur, S. S., Lee, C.-E., Kim, K.-S., Hur, M.-W.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 10.72 MB

english, 2013

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