Volume 42; Issue 13

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Nucleic Acids Research
Volume 42; Issue 13

Nucleic Acids Research

Volume 42; Issue 13

1

Quantitative telomerase enzyme activity determination using droplet digital PCR with single cell resolution

Ludlow, A. T., Robin, J. D., Sayed, M., Litterst, C. M., Shelton, D. N., Shay, J. W., Wright, W. E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.21 MB

english, 2014

2

Uncoupling of the dynamics of host-pathogen interaction uncovers new mechanisms of viral interferon antagonism at the single-cell level

Rand, U., Hillebrand, U., Sievers, S., Willenberg, S., Koster, M., Hauser, H., Wirth, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 785 KB

english, 2014

3

Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING

Wu, X., Wu, F.-H., Wang, X., Wang, L., Siedow, J. N., Zhang, W., Pei, Z.-M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

4

Two cationic porphyrin isomers showing different multimeric G-quadruplex recognition specificity against monomeric G-quadruplexes

Huang, X.-X., Zhu, L.-N., Wu, B., Huo, Y.-F., Duan, N.-N., Kong, D.-M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

5

Mosquito and Drosophila entomobirnaviruses suppress dsRNA- and siRNA-induced RNAi

van Cleef, K. W. R., van Mierlo, J. T., Miesen, P., Overheul, G. J., Fros, J. J., Schuster, S., Marklewitz, M., Pijlman, G. P., Junglen, S., van Rij, R. P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 944 KB

english, 2014

6

DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria

Gadelle, D., Krupovic, M., Raymann, K., Mayer, C., Forterre, P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.98 MB

english, 2014

7

Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization

Shahbabian, K., Jeronimo, C., Forget, A., Robert, F., Chartrand, P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.92 MB

english, 2014

8

A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers

Zhi, H., Ning, S., Li, X., Li, Y., Wu, W., Li, X.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.83 MB

english, 2014

9

Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element

Li, Y.-C., Chang, C.-k., Chang, C.-F., Cheng, Y.-H., Fang, P.-J., Yu, T., Chen, S.-C., Li, Y.-C., Hsiao, C.-D., Huang, T.-h.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.61 MB

english, 2014

10

Free mRNA in excess upon polysome dissociation is a scaffold for protein multimerization to form stress granules

Bounedjah, O., Desforges, B., Wu, T.-D., Pioche-Durieu, C., Marco, S., Hamon, L., Curmi, P. A., Guerquin-Kern, J.-L., Pietrement, O., Pastre, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 12.80 MB

english, 2014

11

Conjugation with polyamines enhances the antibacterial and anticancer activity of chloramphenicol

Kostopoulou, O. N., Kouvela, E. C., Magoulas, G. E., Garnelis, T., Panagoulias, I., Rodi, M., Papadopoulos, G., Mouzaki, A., Dinos, G. P., Papaioannou, D., Kalpaxis, D. L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 967 KB

english, 2014

12

In vivo imaging of protein-protein and RNA-protein interactions using novel far-red fluorescence complementation systems

Han, Y., Wang, S., Zhang, Z., Ma, X., Li, W., Zhang, X., Deng, J., Wei, H., Li, Z., Zhang, X.-E., Cui, Z.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.62 MB

english, 2014

13

Targeted delivery of antisense oligonucleotides to hepatocytes using triantennary N-acetyl galactosamine improves potency 10-fold in mice

Prakash, T. P., Graham, M. J., Yu, J., Carty, R., Low, A., Chappell, A., Schmidt, K., Zhao, C., Aghajan, M., Murray, H. F., Riney, S., Booten, S. L., Murray, S. F., Gaus, H., Crosby, J., Lima, W. F.,

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.92 MB

english, 2014

14

Computational detection and suppression of sequence-specific off-target phenotypes from whole genome RNAi screens

Zhong, R., Kim, J., Kim, H. S., Kim, M., Lum, L., Levine, B., Xiao, G., White, M. A., Xie, Y.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.23 MB

english, 2014

15

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems

Oberstaller, J., Pumpalova, Y., Schieler, A., Llinas, M., Kissinger, J. C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.32 MB

english, 2014

16

Genomic mapping of cAMP receptor protein (CRPMt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor

Kahramanoglou, C., Cortes, T., Matange, N., Hunt, D. M., Visweswariah, S. S., Young, D. B., Buxton, R. S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 953 KB

english, 2014

17

Remarkable acceleration of a DNA/RNA inter-strand functionality transfer reaction to modify a cytosine residue: the proximity effect via complexation with a metal cation

Jitsuzaki, D., Onizuka, K., Nishimoto, A., Oshiro, I., Taniguchi, Y., Sasaki, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.92 MB

english, 2014

18

Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes

Ferreira-Cerca, S., Kiburu, I., Thomson, E., LaRonde, N., Hurt, E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.30 MB

english, 2014

19

Hypermethylated-capped selenoprotein mRNAs in mammals

Wurth, L., Gribling-Burrer, A.-S., Verheggen, C., Leichter, M., Takeuchi, A., Baudrey, S., Martin, F., Krol, A., Bertrand, E., Allmang, C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.28 MB

english, 2014

20

ChIP-Enrich: gene set enrichment testing for ChIP-seq data

Welch, R. P., Lee, C., Imbriano, P. M., Patil, S., Weymouth, T. E., Smith, R. A., Scott, L. J., Sartor, M. A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

21

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts

Ikeda, M., Furukohri, A., Philippin, G., Loechler, E., Akiyama, M. T., Katayama, T., Fuchs, R. P., Maki, H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.63 MB

english, 2014

22

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer

Richter, C., Dy, R. L., McKenzie, R. E., Watson, B. N. J., Taylor, C., Chang, J. T., McNeil, M. B., Staals, R. H. J., Fineran, P. C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.74 MB

english, 2014

23

Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis

DeOcesano-Pereira, C., Amaral, M. S., Parreira, K. S., Ayupe, A. C., Jacysyn, J. F., Amarante-Mendes, G. P., Reis, E. M., Verjovski-Almeida, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.95 MB

english, 2014

24

MPV17L2 is required for ribosome assembly in mitochondria

Dalla Rosa, I., Durigon, R., Pearce, S. F., Rorbach, J., Hirst, E. M. A., Vidoni, S., Reyes, A., Brea-Calvo, G., Minczuk, M., Woellhaf, M. W., Herrmann, J. M., Huynen, M. A., Holt, I. J., Spinazzola,

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.63 MB

english, 2014

25

Subscriptions

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 36 KB

english, 2014

26

Revealing transient structures of nucleosomes as DNA unwinds

Chen, Y., Tokuda, J. M., Topping, T., Sutton, J. L., Meisburger, S. P., Pabit, S. A., Gloss, L. M., Pollack, L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.17 MB

english, 2014

27

Transition-state destabilization reveals how human DNA polymerase proceeds across the chemically unstable lesion N7-methylguanine

Koag, M.-C., Kou, Y., Ouzon-Shubeita, H., Lee, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.32 MB

english, 2014

28

Nucleic Acids Research: Editorial Board

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 421 KB

2014

29

Pif1 regulates telomere length by preferentially removing telomerase from long telomere ends

Li, J.-R., Yu, T.-Y., Chien, I.-C., Lu, C.-Y., Lin, J.-J., Li, H.-W.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

30

Citrullination of DNMT3A by PADI4 regulates its stability and controls DNA methylation

Deplus, R., Denis, H., Putmans, P., Calonne, E., Fourrez, M., Yamamoto, K., Suzuki, A., Fuks, F.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

31

Repetitive RNA unwinding by RNA helicase A facilitates RNA annealing

Koh, H. R., Xing, L., Kleiman, L., Myong, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.01 MB

english, 2014

32

CBP and p300 acetylate PCNA to link its degradation with nucleotide excision repair synthesis

Cazzalini, O., Sommatis, S., Tillhon, M., Dutto, I., Bachi, A., Rapp, A., Nardo, T., Scovassi, A. I., Necchi, D., Cardoso, M. C., Stivala, L. A., Prosperi, E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.46 MB

english, 2014

33

Phosphorothioate oligonucleotides can displace NEAT1 RNA and form nuclear paraspeckle-like structures

Shen, W., Liang, X.-h., Crooke, S. T.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 16.42 MB

english, 2014

34

The -1,3-glucanosyltransferase Gas1 regulates Sir2-mediated rDNA stability in Saccharomyces cerevisiae

Ha, C. W., Kim, K., Chang, Y. J., Kim, B., Huh, W.-K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

35

Dynamics and stability of polymorphic human telomeric G-quadruplex under tension

You, H., Zeng, X., Xu, Y., Lim, C. J., Efremov, A. K., Phan, A. T., Yan, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

36

HRAS is silenced by two neighboring G-quadruplexes and activated by MAZ, a zinc-finger transcription factor with DNA unfolding property

Cogoi, S., Shchekotikhin, A. E., Xodo, L. E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.82 MB

english, 2014

37

Structural basis of nucleic acid binding by Nicotiana tabacum glycine-rich RNA-binding protein: implications for its RNA chaperone function

Khan, F., Daniels, M. A., Folkers, G. E., Boelens, R., Saqlan Naqvi, S. M., van Ingen, H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 6.28 MB

english, 2014

38

Reverse gyrase--recent advances and current mechanistic understanding of positive DNA supercoiling

Lulchev, P., Klostermeier, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.07 MB

english, 2014

39

Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties

Lim, C. J., Kenney, L. J., Yan, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.88 MB

english, 2014

40

Human ISWI complexes are targeted by SMARCA5 ATPase and SLIDE domains to help resolve lesion-stalled transcription

Aydin, O. Z., Marteijn, J. A., Ribeiro-Silva, C., Rodriguez Lopez, A., Wijgers, N., Smeenk, G., van Attikum, H., Poot, R. A., Vermeulen, W., Lans, H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.01 MB

english, 2014

41

Analysis of neonatal brain lacking ATRX or MeCP2 reveals changes in nucleosome density, CTCF binding and chromatin looping

Kernohan, K. D., Vernimmen, D., Gloor, G. B., Berube, N. G.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.26 MB

english, 2014

42

Ultrasensitive isolation, identification and quantification of DNA-protein adducts by ELISA-based RADAR assay

Kiianitsa, K., Maizels, N.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.15 MB

english, 2014

43

The elusive evidence for chromothripsis

Kinsella, M., Patel, A., Bafna, V.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.74 MB

english, 2014

44

Structural basis of the methylation specificity of R.DpnI

Mierzejewska, K., Siwek, W., Czapinska, H., Kaus-Drobek, M., Radlinska, M., Skowronek, K., Bujnicki, J. M., Dadlez, M., Bochtler, M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

45

The organization of RNA contacts by PTB for regulation of FAS splicing

Mickleburgh, I., Kafasla, P., Cherny, D., Llorian, M., Curry, S., Jackson, R. J., Smith, C. W. J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 9.66 MB

english, 2014

46

A gain-of-function mouse model identifies PRMT6 as a NF- B coactivator

Di Lorenzo, A., Yang, Y., Macaluso, M., Bedford, M. T.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

47

CstF-64 supports pluripotency and regulates cell cycle progression in embryonic stem cells through histone 3' end processing

Youngblood, B. A., Grozdanov, P. N., MacDonald, C. C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.79 MB

english, 2014

48

Nucleic Acids Research: VOLUME 42 ISSUE 13 2014

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 8.41 MB

2014

49

The N-terminus of Mcm10 is important for interaction with the 9-1-1 clamp and in resistance to DNA damage

Alver, R. C., Zhang, T., Josephrajan, A., Fultz, B. L., Hendrix, C. J., Das-Bradoo, S., Bielinsky, A.-K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.37 MB

english, 2014

50

ATM regulates NF- B-dependent immediate-early genes via RelA Ser 276 phosphorylation coupled to CDK9 promoter recruitment

Fang, L., Choudhary, S., Zhao, Y., Edeh, C. B., Yang, C., Boldogh, I., Brasier, A. R.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.18 MB

english, 2014

51

TET-mediated oxidation of methylcytosine causes TDG or NEIL glycosylase dependent gene reactivation

Muller, U., Bauer, C., Siegl, M., Rottach, A., Leonhardt, H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 6.39 MB

english, 2014

52

Serial number tagging reveals a prominent sequence preference of retrotransposon integration

Chatterjee, A. G., Esnault, C., Guo, Y., Hung, S., McQueen, P. G., Levin, H. L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.48 MB

english, 2014

53

SUMOylation modulates the transcriptional activity of androgen receptor in a target gene and pathway selective manner

Sutinen, P., Malinen, M., Heikkinen, S., Palvimo, J. J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 979 KB

english, 2014

54

Inventory of telomerase components in human cells reveals multiple subpopulations of hTR and hTERT

Xi, L., Cech, T. R.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.84 MB

english, 2014

55

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors

Wilkerson, M. D., Cabanski, C. R., Sun, W., Hoadley, K. A., Walter, V., Mose, L. E., Troester, M. A., Hammerman, P. S., Parker, J. S., Perou, C. M., Hayes, D. N.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.33 MB

english, 2014

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