Volume 42; Issue 17

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Nucleic Acids Research
Volume 42; Issue 17

Nucleic Acids Research

Volume 42; Issue 17

1

Requirements for 5'dRP/AP lyase activity in Ku

Strande, N. T., Carvajal-Garcia, J., Hallett, R. A., Waters, C. A., Roberts, S. A., Strom, C., Kuhlman, B., Ramsden, D. A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

2

CRISPR-Cas9-assisted recombineering in Lactobacillus reuteri

Oh, J.-H., van Pijkeren, J.-P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.28 MB

english, 2014

3

MixMir: microRNA motif discovery from gene expression data using mixed linear models

Diao, L., Marcais, A., Norton, S., Chen, K. C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

4

Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice

Zhou, H., Liu, B., Weeks, D. P., Spalding, M. H., Yang, B.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.31 MB

english, 2014

5

Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes

Xu, Y., Gan, E.-S., Zhou, J., Wee, W.-Y., Zhang, X., Ito, T.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.99 MB

english, 2014

6

Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae

Yuzenkova, Y., Gamba, P., Herber, M., Attaiech, L., Shafeeq, S., Kuipers, O. P., Klumpp, S., Zenkin, N., Veening, J.-W.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.52 MB

english, 2014

7

Redundancy of mammalian Y family DNA polymerases in cellular responses to genomic DNA lesions induced by ultraviolet light

Jansen, J. G., Temviriyanukul, P., Wit, N., Delbos, F., Reynaud, C.-A., Jacobs, H., de Wind, N.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.90 MB

english, 2014

8

Broad-host-range vector system for synthetic biology and biotechnology in cyanobacteria

Taton, A., Unglaub, F., Wright, N. E., Zeng, W. Y., Paz-Yepes, J., Brahamsha, B., Palenik, B., Peterson, T. C., Haerizadeh, F., Golden, S. S., Golden, J. W.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.13 MB

english, 2014

9

A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation

Dubois-Chevalier, J., Oger, F., Dehondt, H., Firmin, F. F., Gheeraert, C., Staels, B., Lefebvre, P., Eeckhoute, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.04 MB

english, 2014

10

Distinct tmRNA sequence elements facilitate RNase R engagement on rescued ribosomes for selective nonstop mRNA decay

Venkataraman, K., Zafar, H., Karzai, A. W.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014

11

An evolutionarily conserved interaction of tumor suppressor protein Pdcd4 with the poly(A)-binding protein contributes to translation suppression by Pdcd4

Fehler, O., Singh, P., Haas, A., Ulrich, D., Muller, J. P., Ohnheiser, J., Klempnauer, K.-H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.13 MB

english, 2014

12

NF- B directly mediates epigenetic deregulation of common microRNAs in Epstein-Barr virus-mediated transformation of B-cells and in lymphomas

Vento-Tormo, R., Rodriguez-Ubreva, J., Lisio, L. D., Islam, A. B. M. M. K., Urquiza, J. M., Hernando, H., Lopez-Bigas, N., Shannon-Lowe, C., Martinez, N., Montes-Moreno, S., Piris, M. A., Ballestar, E

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.62 MB

english, 2014

13

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data

Piper, J., Elze, M. C., Cauchy, P., Cockerill, P. N., Bonifer, C., Ott, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 188 KB

english, 2014

14

Creating and validating cis-regulatory maps of tissue-specific gene expression regulation

O'Connor, T. R., Bailey, T. L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.46 MB

english, 2014

15

The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations

Ru, Y., Kechris, K. J., Tabakoff, B., Hoffman, P., Radcliffe, R. A., Bowler, R., Mahaffey, S., Rossi, S., Calin, G. A., Bemis, L., Theodorescu, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.90 MB

english, 2014

16

Catalytic activities of Werner protein are affected by adduction with 4-hydroxy-2-nonenal

Czerwi ska, J., Pozna ski, J., D bski, J., Bukowy, Z., Bohr, V. A., Tudek, B., Speina, E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.53 MB

english, 2014

17

Computational identification of RNA functional determinants by three-dimensional quantitative structure-activity relationships

Blanchet, M.-F., St-Onge, K., Lisi, V., Robitaille, J., Hamel, S., Major, F.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.70 MB

english, 2014

18

Nucleic Acids Research: Editorial Board

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 421 KB

2014

19

MBNL proteins and their target RNAs, interaction and splicing regulation

Konieczny, P., Stepniak-Konieczna, E., Sobczak, K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.87 MB

english, 2014

20

Synonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid

Babbitt, G. A., Alawad, M. A., Schulze, K. V., Hudson, A. O.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

21

3'LIFE: a functional assay to detect miRNA targets in high-throughput

Wolter, J. M., Kotagama, K., Pierre-Bez, A. C., Firago, M., Mangone, M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.93 MB

english, 2014

22

Nucleic Acids Research: VOLUME 42 ISSUE 17 2014

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 8.01 MB

2014

23

Direct binding of the Alu binding protein dimer SRP9/14 to 40S ribosomal subunits promotes stress granule formation and is regulated by Alu RNA

Berger, A., Ivanova, E., Gareau, C., Scherrer, A., Mazroui, R., Strub, K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 15.35 MB

english, 2014

24

The ubiquitin-selective chaperone Cdc48/p97 associates with Ubx3 to modulate monoubiquitylation of histone H2B

Bonizec, M., Herissant, L., Pokrzywa, W., Geng, F., Wenzel, S., Howard, G. C., Rodriguez, P., Krause, S., Tansey, W. P., Hoppe, T., Dargemont, C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.84 MB

english, 2014

25

Gammaretrovirus mRNA expression is mediated by a novel, bipartite post-transcriptional regulatory element

Pilkington, G. R., Purzycka, K. J., Bear, J., Le Grice, S. F. J., Felber, B. K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.90 MB

english, 2014

26

Mechanism of retinoic acid-induced transcription: histone code, DNA oxidation and formation of chromatin loops

Zuchegna, C., Aceto, F., Bertoni, A., Romano, A., Perillo, B., Laccetti, P., Gottesman, M. E., Avvedimento, E. V., Porcellini, A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.49 MB

english, 2014

27

Two orthogonal cleavages separate subunit RNAs in mouse ribosome biogenesis

Wang, M., Anikin, L., Pestov, D. G.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.17 MB

english, 2014

28

Multifaceted role of the Topo III -RMI1-RMI2 complex and DNA2 in the BLM-dependent pathway of DNA break end resection

Daley, J. M., Chiba, T., Xue, X., Niu, H., Sung, P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.09 MB

english, 2014

29

The CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis contains a [2Fe-2S] cluster: crystal structure and nuclease activity

Lemak, S., Nocek, B., Beloglazova, N., Skarina, T., Flick, R., Brown, G., Joachimiak, A., Savchenko, A., Yakunin, A. F.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.62 MB

english, 2014

30

Inducible, tightly regulated and growth condition-independent transcription factor in Saccharomyces cerevisiae

Ottoz, D. S. M., Rudolf, F., Stelling, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014