Volume 42; Issue 19

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Nucleic Acids Research
Volume 42; Issue 19

Nucleic Acids Research

Volume 42; Issue 19

1

Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector

Kabadi, A. M., Ousterout, D. G., Hilton, I. B., Gersbach, C. A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

2

Quantitative determination of decitabine incorporation into DNA and its effect on mutation rates in human cancer cells

Oz, S., Raddatz, G., Rius, M., Blagitko-Dorfs, N., Lubbert, M., Maercker, C., Lyko, F.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 678 KB

english, 2014

3

A split intein T7 RNA polymerase for transcriptional AND-logic

Schaerli, Y., Gili, M., Isalan, M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 227 KB

english, 2014

4

Ribosome-controlled transcription termination is essential for the production of antibiotic microcin C

Zukher, I., Novikova, M., Tikhonov, A., Nesterchuk, M. V., Osterman, I. A., Djordjevic, M., Sergiev, P. V., Sharma, C. M., Severinov, K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.28 MB

english, 2014

5

RAN translation and frameshifting as translational challenges at simple repeats of human neurodegenerative disorders

Wojciechowska, M., Olejniczak, M., Galka-Marciniak, P., Jazurek, M., Krzyzosiak, W. J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 478 KB

english, 2014

6

Protein-responsive ribozyme switches in eukaryotic cells

Kennedy, A. B., Vowles, J. V., d'Espaux, L., Smolke, C. D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.44 MB

english, 2014

7

A 'tool box' for deciphering neuronal circuits in the developing chick spinal cord

Hadas, Y., Etlin, A., Falk, H., Avraham, O., Kobiler, O., Panet, A., Lev-Tov, A., Klar, A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 24.19 MB

english, 2014

8

ABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

Pasi, M., Maddocks, J. H., Beveridge, D., Bishop, T. C., Case, D. A., Cheatham, T., Dans, P. D., Jayaram, B., Lankas, F., Laughton, C., Mitchell, J., Osman, R., Orozco, M., Perez, A., Petkevi i te, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.27 MB

english, 2014

9

Highly potent dUTPase inhibition by a bacterial repressor protein reveals a novel mechanism for gene expression control

Szabo, J. E., Nemeth, V., Papp-Kadar, V., Nyiri, K., Leveles, I., Bendes, A. A., Zagyva, I., Rona, G., Palinkas, H. L., Besztercei, B., Ozohanics, O., Vekey, K., Liliom, K., Toth, J., Vertessy, B. G.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.72 MB

english, 2014

10

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

Yard mc , G. G., Frank, C. L., Crawford, G. E., Ohler, U.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.06 MB

english, 2014

11

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

Prestat, E., David, M. M., Hultman, J., Ta , N., Lamendella, R., Dvornik, J., Mackelprang, R., Myrold, D. D., Jumpponen, A., Tringe, S. G., Holman, E., Mavromatis, K., Jansson, J. K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.63 MB

english, 2014

12

Subscriptions

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 59 KB

english, 2014

13

Telomere stability and development of ctc1 mutants are rescued by inhibition of EJ recombination pathways in a telomerase-dependent manner

Amiard, S., Olivier, M., Allain, E., Choi, K., Smith-Unna, R., Henderson, I. R., White, C. I., Gallego, M. E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.64 MB

english, 2014

14

A biomechanical mechanism for initiating DNA packaging

Wang, H., Yehoshua, S., Ali, S. S., Navarre, W. W., Milstein, J. N.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.31 MB

english, 2014

15

Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

Hector, R. D., Burlacu, E., Aitken, S., Bihan, T. L., Tuijtel, M., Zaplatina, A., Cook, A. G., Granneman, S.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.08 MB

english, 2014

16

A dsRNA-binding protein of a complex invertebrate DNA virus suppresses the Drosophila RNAi response

Bronkhorst, A. W., van Cleef, K. W. R., Venselaar, H., van Rij, R. P.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

17

A new method for accurate assessment of DNA quality after bisulfite treatment

Ehrich, M., Zoll, S., Sur, S., van den Boom, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 80 KB

english, 2014

18

Nucleic Acids Research: VOLUME 42 ISSUE 19 2014

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 6.55 MB

2014

19

Weak base pairing in both seed and 3' regions reduces RNAi off-targets and enhances si/shRNA designs

Gu, S., Zhang, Y., Jin, L., Huang, Y., Zhang, F., Bassik, M. C., Kampmann, M., Kay, M. A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 826 KB

english, 2014

20

ETS1 is a genome-wide effector of RAS/ERK signaling in epithelial cells

Plotnik, J. P., Budka, J. A., Ferris, M. W., Hollenhorst, P. C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.15 MB

english, 2014

21

eIF5 and eIF5B together stimulate 48S initiation complex formation during ribosomal scanning

Pisareva, V. P., Pisarev, A. V.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.79 MB

english, 2014

22

HSP90 plays an important role in piRNA biogenesis and retrotransposon repression in mouse

Ichiyanagi, T., Ichiyanagi, K., Ogawa, A., Kuramochi-Miyagawa, S., Nakano, T., Chuma, S., Sasaki, H., Udono, H.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.57 MB

english, 2014

23

RAD51B plays an essential role during somatic and meiotic recombination in Physcomitrella

Charlot, F., Chelysheva, L., Kamisugi, Y., Vrielynck, N., Guyon, A., Epert, A., Guin, S. L., Schaefer, D. G., Cuming, A. C., Grelon, M., Nogue, F.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.24 MB

english, 2014

24

Mechanical force antagonizes the inhibitory effects of RecX on RecA filament formation in Mycobacterium tuberculosis

Le, S., Chen, H., Zhang, X., Chen, J., Patil, K. N., Muniyappa, K., Yan, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.42 MB

english, 2014

25

The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation

Kobayashi, K., Katz, A., Rajkovic, A., Ishii, R., Branson, O. E., Freitas, M. A., Ishitani, R., Ibba, M., Nureki, O.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.16 MB

english, 2014

26

A genome-wide function of THSC/TREX-2 at active genes prevents transcription-replication collisions

Santos-Pereira, J. M., Garcia-Rubio, M. L., Gonzalez-Aguilera, C., Luna, R., Aguilera, A.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.64 MB

english, 2014

27

Nucleic Acids Research: Editorial Board

Journal:

Nucleic Acids Research

Year:

2014

File:

PDF, 421 KB

2014

28

Structure of the complete bacterial SRP Alu domain

Kempf, G., Wild, K., Sinning, I.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.92 MB

english, 2014

29

A novel AP-1/miR-101 regulatory feedback loop and its implication in the migration and invasion of hepatoma cells

Liu, J.-J., Lin, X.-J., Yang, X.-J., Zhou, L., He, S., Zhuang, S.-M., Yang, J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 8.41 MB

english, 2014

30

Quantitative effect of target translation on small RNA efficacy reveals a novel mode of interaction

Lavi-Itzkovitz, A., Peterman, N., Jost, D., Levine, E.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 437 KB

english, 2014

31

Homodimerization of HYL1 ensures the correct selection of cleavage sites in primary miRNA

Yang, X., Ren, W., Zhao, Q., Zhang, P., Wu, F., He, Y.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 7.66 MB

english, 2014

32

ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes

Wale , T., Chojnowski, G., Gierski, P., Bujnicki, J. M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.67 MB

english, 2014

33

Capping of vesicular stomatitis virus pre-mRNA is required for accurate selection of transcription stop-start sites and virus propagation

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.92 MB

english, 2014

34

Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination

Ignarski, M., Singh, A., Swart, E. C., Arambasic, M., Sandoval, P. Y., Nowacki, M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 11.66 MB

english, 2014

35

CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin

Weth, O., Paprotka, C., Gunther, K., Schulte, A., Baierl, M., Leers, J., Galjart, N., Renkawitz, R.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.44 MB

english, 2014

36

ClpXP protease targets long-lived DNA translocation states of a helicase-like motor to cause restriction alleviation

Simons, M., Diffin, F. M., Szczelkun, M. D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

37

Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore

Dickson, A., Mustoe, A. M., Salmon, L., Brooks, C. L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

38

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools

Hu, J. C., Sherlock, G., Siegele, D. A., Aleksander, S. A., Ball, C. A., Demeter, J., Gouni, S., Holland, T. A., Karp, P. D., Lewis, J. E., Liles, N. M., McIntosh, B. K., Mi, H., Muruganujan, A., Wymo

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 29 KB

english, 2014

39

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix

Horton, J. R., Wang, H., Mabuchi, M. Y., Zhang, X., Roberts, R. J., Zheng, Y., Wilson, G. G., Cheng, X.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.35 MB

english, 2014

40

The PXDLS linear motif regulates circadian rhythmicity through protein-protein interactions

Shalev, M., Aviram, R., Adamovich, Y., Kraut-Cohen, J., Shamia, T., Ben-Dor, S., Golik, M., Asher, G.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.20 MB

english, 2014

41

Human PrimPol mutation associated with high myopia has a DNA replication defect

Keen, B. A., Bailey, L. J., Jozwiakowski, S. K., Doherty, A. J.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.59 MB

english, 2014

42

Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection

Livny, J., Zhou, X., Mandlik, A., Hubbard, T., Davis, B. M., Waldor, M. K.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.53 MB

english, 2014

43

Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism

Largy, E., Mergny, J.-L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.09 MB

english, 2014

44

Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits

Turowski, T. W., Lebaron, S., Zhang, E., Peil, L., Dudnakova, T., Petfalski, E., Granneman, S., Rappsilber, J., Tollervey, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.10 MB

english, 2014

45

THOC5 controls 3'end-processing of immediate early genes via interaction with polyadenylation specific factor 100 (CPSF100)

Tran, D. D. H., Saran, S., Williamson, A. J. K., Pierce, A., Dittrich-Breiholz, O., Wiehlmann, L., Koch, A., Whetton, A. D., Tamura, T.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

46

Removal of 8-oxo-GTP by MutT hydrolase is not a major contributor to transcriptional fidelity

Gordon, A. J. E., Satory, D., Wang, M., Halliday, J. A., Golding, I., Herman, C.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.32 MB

english, 2014

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