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Volume 42; Issue 2
Main
Nucleic Acids Research
Volume 42; Issue 2
Nucleic Acids Research
Volume 42; Issue 2
1
Quadruplex-forming sequences occupy discrete regions inside plant LTR retrotransposons
Lexa, M.
,
Kejnovsky, E.
,
Steflova, P.
,
Konvalinova, H.
,
Vorlickova, M.
,
Vyskot, B.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.14 MB
Your tags:
english, 2014
2
High-copy bacterial plasmids diffuse in the nucleoid-free space, replicate stochastically and are randomly partitioned at cell division
Reyes-Lamothe, R.
,
Tran, T.
,
Meas, D.
,
Lee, L.
,
Li, A. M.
,
Sherratt, D. J.
,
Tolmasky, M. E.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 4.37 MB
Your tags:
english, 2014
3
Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms
Zhou, H.-L.
,
Luo, G.
,
Wise, J. A.
,
Lou, H.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 10.12 MB
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english, 2014
4
Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote
Strakova, E.
,
Zikova, A.
,
Vohradsky, J.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 384 KB
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english, 2014
5
The P body protein LSm1 contributes to stimulation of hepatitis C virus translation, but not replication, by microRNA-122
Roberts, A. P. E.
,
Doidge, R.
,
Tarr, A. W.
,
Jopling, C. L.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 1.73 MB
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english, 2014
6
An optimized streptavidin-binding RNA aptamer for purification of ribonucleoprotein complexes identifies novel ARE-binding proteins
Leppek, K.
,
Stoecklin, G.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 2.89 MB
Your tags:
english, 2014
7
Detection of G-quadruplex DNA in mammalian cells
Henderson, A.
,
Wu, Y.
,
Huang, Y. C.
,
Chavez, E. A.
,
Platt, J.
,
Johnson, F. B.
,
Brosh, R. M.
,
Sen, D.
,
Lansdorp, P. M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 10.81 MB
Your tags:
english, 2014
8
Deep sequencing analyses expands the Pseudomonas aeruginosa AmpR regulon to include small RNA-mediated regulation of iron acquisition, heat shock and oxidative stress response
Balasubramanian, D.
,
Kumari, H.
,
Jaric, M.
,
Fernandez, M.
,
Turner, K. H.
,
Dove, S. L.
,
Narasimhan, G.
,
Lory, S.
,
Mathee, K.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 5.45 MB
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english, 2014
9
Fast fitting to low resolution density maps: elucidating large-scale motions of the ribosome
Flores, S. C.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 11.68 MB
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english, 2014
10
Quantitative influence of macromolecular crowding on gene regulation kinetics
Tabaka, M.
,
Kalwarczyk, T.
,
Holyst, R.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 2.18 MB
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english, 2014
11
Discovery of functional genomic motifs in viruses with ViReMa-a Virus Recombination Mapper-for analysis of next-generation sequencing data
Routh, A.
,
Johnson, J. E.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 549 KB
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english, 2014
12
The primary microRNA-208b interacts with Polycomb-group protein, Ezh2, to regulate gene expression in the heart
Mathiyalagan, P.
,
Okabe, J.
,
Chang, L.
,
Su, Y.
,
Du, X.-J.
,
El-Osta, A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 10.18 MB
Your tags:
english, 2014
13
Next-generation sequencing reveals how RNA catalysts evolve from random space
Ameta, S.
,
Winz, M.-L.
,
Previti, C.
,
Jaschke, A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 4.49 MB
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english, 2014
14
TACC3 mediates the association of MBD2 with histone acetyltransferases and relieves transcriptional repression of methylated promoters
Angrisano, T.
,
Lembo, F.
,
Pero, R.
,
Natale, F.
,
Fusco, A.
,
Avvedimento, V. E.
,
Bruni, C. B.
,
Chiariotti, L.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 133 KB
Your tags:
english, 2014
15
Evaluation of TRAP-sequencing technology with a versatile conditional mouse model
Hupe, M.
,
Li, M. X.
,
Gertow Gillner, K.
,
Adams, R. H.
,
Stenman, J. M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 17.59 MB
Your tags:
english, 2014
16
The double PHD finger domain of MOZ/MYST3 induces -helical structure of the histone H3 tail to facilitate acetylation and methylation sampling and modification
Dreveny, I.
,
Deeves, S. E.
,
Fulton, J.
,
Yue, B.
,
Messmer, M.
,
Bhattacharya, A.
,
Collins, H. M.
,
Heery, D. M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 9.70 MB
Your tags:
english, 2014
17
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
Raczynska, K. D.
,
Stepien, A.
,
Kierzkowski, D.
,
Kalak, M.
,
Bajczyk, M.
,
McNicol, J.
,
Simpson, C. G.
,
Szweykowska-Kulinska, Z.
,
Brown, J. W. S.
,
Jarmolowski, A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 4.06 MB
Your tags:
english, 2014
18
Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest
Cui, F.
,
Zhurkin, V. B.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 5.46 MB
Your tags:
english, 2014
19
Resveratrol and EGCG bind directly and distinctively to miR-33a and miR-122 and modulate divergently their levels in hepatic cells
Baselga-Escudero, L.
,
Blade, C.
,
Ribas-Latre, A.
,
Casanova, E.
,
Suarez, M.
,
Torres, J. L.
,
Salvado, M. J.
,
Arola, L.
,
Arola-Arnal, A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 3.06 MB
Your tags:
english, 2014
20
A feed forward circuit comprising Spt6, Ctk1 and PAF regulates Pol II CTD phosphorylation and transcription elongation
Dronamraju, R.
,
Strahl, B. D.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 4.16 MB
Your tags:
english, 2014
21
Characterization of the interaction between HMGB1 and H3--a possible means of positioning HMGB1 in chromatin
Watson, M.
,
Stott, K.
,
Fischl, H.
,
Cato, L.
,
Thomas, J. O.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 2.91 MB
Your tags:
english, 2014
22
CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation
Plasschaert, R. N.
,
Vigneau, S.
,
Tempera, I.
,
Gupta, R.
,
Maksimoska, J.
,
Everett, L.
,
Davuluri, R.
,
Mamorstein, R.
,
Lieberman, P. M.
,
Schultz, D.
,
Hannenhalli, S.
,
Bartolomei, M. S.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 9.82 MB
Your tags:
english, 2014
23
Mechanistic insights into the role of Hop2-Mnd1 in meiotic homologous DNA pairing
Zhao, W.
,
Saro, D.
,
Hammel, M.
,
Kwon, Y.
,
Xu, Y.
,
Rambo, R. P.
,
Williams, G. J.
,
Chi, P.
,
Lu, L.
,
Pezza, R. J.
,
Camerini-Otero, R. D.
,
Tainer, J. A.
,
Wang, H.-W.
,
Sung, P.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 6.52 MB
Your tags:
english, 2014
24
High-resolution characterization of CPD hotspot formation in human fibroblasts
Zavala, A. G.
,
Morris, R. T.
,
Wyrick, J. J.
,
Smerdon, M. J.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 3.89 MB
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english, 2014
25
Conformational and thermodynamic hallmarks of DNA operator site specificity in the copper sensitive operon repressor from Streptomyces lividans
Tan, B. G.
,
Vijgenboom, E.
,
Worrall, J. A. R.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 7.45 MB
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english, 2014
26
Subscriptions
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 50 KB
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english, 2014
27
The ADAR RNA editing enzyme controls neuronal excitability in Drosophila melanogaster
Li, X.
,
Overton, I. M.
,
Baines, R. A.
,
Keegan, L. P.
,
O'Connell, M. A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 849 KB
Your tags:
english, 2014
28
Replication factors transiently associate with mtDNA at the mitochondrial inner membrane to facilitate replication
Rajala, N.
,
Gerhold, J. M.
,
Martinsson, P.
,
Klymov, A.
,
Spelbrink, J. N.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 17.91 MB
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english, 2014
29
Nucleic Acids Research: VOLUME 42 ISSUE 2 2014
Journal:
Nucleic Acids Research
Year:
2014
File:
PDF, 462 KB
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2014
30
The human oncoprotein MDM2 induces replication stress eliciting early intra-S-phase checkpoint response and inhibition of DNA replication origin firing
Frum, R. A.
,
Singh, S.
,
Vaughan, C.
,
Mukhopadhyay, N. D.
,
Grossman, S. R.
,
Windle, B.
,
Deb, S.
,
Deb, S. P.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.91 MB
Your tags:
english, 2014
31
Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease
Ramia, N. F.
,
Tang, L.
,
Cocozaki, A. I.
,
Li, H.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 9.86 MB
Your tags:
english, 2014
32
Long insert whole genome sequencing for copy number variant and translocation detection
Liang, W. S.
,
Aldrich, J.
,
Tembe, W.
,
Kurdoglu, A.
,
Cherni, I.
,
Phillips, L.
,
Reiman, R.
,
Baker, A.
,
Weiss, G. J.
,
Carpten, J. D.
,
Craig, D. W.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 5.41 MB
Your tags:
english, 2014
33
Staphylococcus aureus protein SAUGI acts as a uracil-DNA glycosylase inhibitor
Wang, H.-C.
,
Hsu, K.-C.
,
Yang, J.-M.
,
Wu, M.-L.
,
Ko, T.-P.
,
Lin, S.-R.
,
Wang, A. H.- J.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.62 MB
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english, 2014
34
Phosphorylation of a C-terminal auto-inhibitory domain increases SMARCAL1 activity
Carroll, C.
,
Bansbach, C. E.
,
Zhao, R.
,
Jung, S. Y.
,
Qin, J.
,
Cortez, D.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 3.06 MB
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english, 2014
35
Nuclear ubiquitination by FBXL5 modulates Snail1 DNA binding and stability
Vinas-Castells, R.
,
Frias, A.
,
Robles-Lanuza, E.
,
Zhang, K.
,
Longmore, G. D.
,
Garcia de Herreros, A.
,
Diaz, V. M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 14.05 MB
Your tags:
english, 2014
36
New scoring system to identify RNA G-quadruplex folding
Beaudoin, J.-D.
,
Jodoin, R.
,
Perreault, J.-P.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.61 MB
Your tags:
english, 2014
37
Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition
Das, U.
,
Wang, L. K.
,
Smith, P.
,
Jacewicz, A.
,
Shuman, S.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.65 MB
Your tags:
english, 2014
38
Tyrosine phosphorylation of HuR by JAK3 triggers dissociation and degradation of HuR target mRNAs
Yoon, J.-H.
,
Abdelmohsen, K.
,
Srikantan, S.
,
Guo, R.
,
Yang, X.
,
Martindale, J. L.
,
Gorospe, M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 13.42 MB
Your tags:
english, 2014
39
Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630
Chen, Y.
,
Ding, Y.
,
Yang, L.
,
Yu, J.
,
Liu, G.
,
Wang, X.
,
Zhang, S.
,
Yu, D.
,
Song, L.
,
Zhang, H.
,
Zhang, C.
,
Huo, L.
,
Huo, C.
,
Wang, Y.
,
Du, Y.
,
Zhang, H.
,
Zhang, P.
,
Na, H.
,
Xu, S.
,
Zhu, Y.
,
Xie, Z.
,
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 12.16 MB
Your tags:
english, 2014
40
Non-biased and efficient global amplification of a single-cell cDNA library
Huang, H.
,
Goto, M.
,
Tsunoda, H.
,
Sun, L.
,
Taniguchi, K.
,
Matsunaga, H.
,
Kambara, H.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 2.00 MB
Your tags:
english, 2014
41
Functional analyses of the C-terminal half of the Saccharomyces cerevisiae Rad52 protein
Kagawa, W.
,
Arai, N.
,
Ichikawa, Y.
,
Saito, K.
,
Sugiyama, S.
,
Saotome, M.
,
Shibata, T.
,
Kurumizaka, H.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 6.69 MB
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english, 2014
42
Multiple myeloma-associated hDIS3 mutations cause perturbations in cellular RNA metabolism and suggest hDIS3 PIN domain as a potential drug target
Tomecki, R.
,
Drazkowska, K.
,
Kucinski, I.
,
Stodus, K.
,
Szczesny, R. J.
,
Gruchota, J.
,
Owczarek, E. P.
,
Kalisiak, K.
,
Dziembowski, A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 18.53 MB
Your tags:
english, 2014
43
No recombination of mtDNA after heteroplasmy for 50 generations in the mouse maternal germline
Hagstrom, E.
,
Freyer, C.
,
Battersby, B. J.
,
Stewart, J. B.
,
Larsson, N.-G.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 1.15 MB
Your tags:
english, 2014
44
Mechanisms of transcriptional repression of cell-cycle G2/M promoters by p63
Testoni, B.
,
Mantovani, R.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 245 KB
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english, 2014
45
Structural determinants of human APOBEC3A enzymatic and nucleic acid binding properties
Mitra, M.
,
Hercik, K.
,
Byeon, I.-J. L.
,
Ahn, J.
,
Hill, S.
,
Hinchee-Rodriguez, K.
,
Singer, D.
,
Byeon, C.-H.
,
Charlton, L. M.
,
Nam, G.
,
Heidecker, G.
,
Gronenborn, A. M.
,
Levin, J. G.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.90 MB
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english, 2014
46
Higher order structural effects stabilizing the reverse Watson-Crick Guanine-Cytosine base pair in functional RNAs
Chawla, M.
,
Abdel-Azeim, S.
,
Oliva, R.
,
Cavallo, L.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 12.07 MB
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english, 2014
47
Nucleic Acids Research - Editorial Board
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 58 KB
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english, 2014
48
Engineered reversal of drug resistance in cancer cells--metastases suppressor factors as change agents
Yadav, V. K.
,
Kumar, A.
,
Mann, A.
,
Aggarwal, S.
,
Kumar, M.
,
Roy, S. D.
,
Pore, S. K.
,
Banerjee, R.
,
Mahesh Kumar, J.
,
Thakur, R. K.
,
Chowdhury, S.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 10.13 MB
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english, 2014
49
Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan
Martinez, A. K.
,
Gordon, E.
,
Sengupta, A.
,
Shirole, N.
,
Klepacki, D.
,
Martinez-Garriga, B.
,
Brown, L. M.
,
Benedik, M. J.
,
Yanofsky, C.
,
Mankin, A. S.
,
Vazquez-Laslop, N.
,
Sachs, M. S.
,
Cruz-Vera, L. R
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 6.59 MB
Your tags:
english, 2014
50
Associations between intronic non-B DNA structures and exon skipping
Tsai, Z. T.-Y.
,
Chu, W.-Y.
,
Cheng, J.-H.
,
Tsai, H.-K.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 1.22 MB
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english, 2014
51
Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases
Niewoehner, O.
,
Jinek, M.
,
Doudna, J. A.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 8.57 MB
Your tags:
english, 2014
52
Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor
Shu, D.
,
Khisamutdinov, E. F.
,
Zhang, L.
,
Guo, P.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 4.76 MB
Your tags:
english, 2014
53
Intrinsically disordered regions of nucleophosmin/B23 regulate its RNA binding activity through their inter- and intra-molecular association
Hisaoka, M.
,
Nagata, K.
,
Okuwaki, M.
Journal:
Nucleic Acids Research
Year:
2014
Language:
english
File:
PDF, 21.21 MB
Your tags:
english, 2014
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