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Volume 43; Issue 1
Main
Nucleic Acids Research
Volume 43; Issue 1
Nucleic Acids Research
Volume 43; Issue 1
1
Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression
Luo, M. L.
,
Mullis, A. S.
,
Leenay, R. T.
,
Beisel, C. L.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 434 KB
Your tags:
english, 2015
2
Efficient programmable gene silencing by Cascade
Rath, D.
,
Amlinger, L.
,
Hoekzema, M.
,
Devulapally, P. R.
,
Lundgren, M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.17 MB
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english, 2015
3
Rho and RNase play a central role in FMN riboswitch regulation in Corynebacterium glutamicum
Takemoto, N.
,
Tanaka, Y.
,
Inui, M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 734 KB
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english, 2015
4
CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli
Beloglazova, N.
,
Kuznedelov, K.
,
Flick, R.
,
Datsenko, K. A.
,
Brown, G.
,
Popovic, A.
,
Lemak, S.
,
Semenova, E.
,
Severinov, K.
,
Yakunin, A. F.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.89 MB
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english, 2015
5
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments
Heyer, E. E.
,
Ozadam, H.
,
Ricci, E. P.
,
Cenik, C.
,
Moore, M. J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.87 MB
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english, 2015
6
Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5
Huang, Y.
,
Yan, J.
,
Li, Q.
,
Li, J.
,
Gong, S.
,
Zhou, H.
,
Gan, J.
,
Jiang, H.
,
Jia, G.-F.
,
Luo, C.
,
Yang, C.-G.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.44 MB
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english, 2015
7
A new heavy lanthanide-dependent DNAzyme displaying strong metal cooperativity and unrescuable phosphorothioate effect
Huang, P.-J. J.
,
Vazin, M.
,
Matuszek, Z.
,
Liu, J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.44 MB
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english, 2015
8
Structural basis for the interaction of protein S1 with the Escherichia coli ribosome
Byrgazov, K.
,
Grishkovskaya, I.
,
Arenz, S.
,
Coudevylle, N.
,
Temmel, H.
,
Wilson, D. N.
,
Djinovic-Carugo, K.
,
Moll, I.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.78 MB
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english, 2015
9
A magnesium-induced RNA conformational switch at the internal ribosome entry site of hepatitis C virus genome visualized by atomic force microscopy
Garcia-Sacristan, A.
,
Moreno, M.
,
Ariza-Mateos, A.
,
Lopez-Camacho, E.
,
Jaudenes, R. M.
,
Vazquez, L.
,
Gomez, J.
,
Martin-Gago, J. A.
,
Briones, C.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.50 MB
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english, 2015
10
The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21
Sloan, K. E.
,
Leisegang, M. S.
,
Doebele, C.
,
Ramirez, A. S.
,
Simm, S.
,
Safferthal, C.
,
Kretschmer, J.
,
Schorge, T.
,
Markoutsa, S.
,
Haag, S.
,
Karas, M.
,
Ebersberger, I.
,
Schleiff, E.
,
Watkins, N. J.
,
B
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.58 MB
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english, 2015
11
Small antisense oligonucleotides against G-quadruplexes: specific mRNA translational switches
Rouleau, S. G.
,
Beaudoin, J.-D.
,
Bisaillon, M.
,
Perreault, J.-P.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.45 MB
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english, 2015
12
Conformation transitions of eukaryotic polyribosomes during multi-round translation
Afonina, Z. A.
,
Myasnikov, A. G.
,
Shirokov, V. A.
,
Klaholz, B. P.
,
Spirin, A. S.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.14 MB
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english, 2015
13
An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference
Peng, W.
,
Feng, M.
,
Feng, X.
,
Liang, Y. X.
,
She, Q.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.98 MB
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english, 2015
14
High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4
Yamaichi, Y.
,
Chao, M. C.
,
Sasabe, J.
,
Clark, L.
,
Davis, B. M.
,
Yamamoto, N.
,
Mori, H.
,
Kurokawa, K.
,
Waldor, M. K.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.48 MB
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english, 2015
15
Mycobacterial RNA polymerase forms unstable open promoter complexes that are stabilized by CarD
Davis, E.
,
Chen, J.
,
Leon, K.
,
Darst, S. A.
,
Campbell, E. A.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.04 MB
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english, 2015
16
Nucleic Acids Research: VOLUME 43 ISSUE 1 2015
Journal:
Nucleic Acids Research
Year:
2015
File:
PDF, 4.09 MB
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2015
17
Topological constraints strongly affect chromatin reconstitution in silico
Brackley, C. A.
,
Allan, J.
,
Keszenman-Pereyra, D.
,
Marenduzzo, D.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.54 MB
Your tags:
english, 2015
18
Multiple roles of the coding sequence 5' end in gene expression regulation
Tuller, T.
,
Zur, H.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.54 MB
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english, 2015
19
The high mobility group A2 protein epigenetically silences the Cdh1 gene during epithelial-to-mesenchymal transition
Tan, E.-J.
,
Kahata, K.
,
Idas, O.
,
Thuault, S.
,
Heldin, C.-H.
,
Moustakas, A.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.48 MB
Your tags:
english, 2015
20
Subgenomic promoter recognition by the norovirus RNA-dependent RNA polymerases
Lin, X.
,
Thorne, L.
,
Jin, Z.
,
Hammad, L. A.
,
Li, S.
,
Deval, J.
,
Goodfellow, I. G.
,
Kao, C. C.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.66 MB
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english, 2015
21
A common set of distinct features that characterize noncoding RNAs across multiple species
Hu, L.
,
Di, C.
,
Kai, M.
,
Yang, Y.-C. T.
,
Li, Y.
,
Qiu, Y.
,
Hu, X.
,
Yip, K. Y.
,
Zhang, M. Q.
,
Lu, Z. J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.13 MB
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english, 2015
22
LKB1 preserves genome integrity by stimulating BRCA1 expression
Gupta, R.
,
Liu, A. Y.
,
Glazer, P. M.
,
Wajapeyee, N.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1013 KB
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english, 2015
23
Novel RNA chaperone domain of RNA-binding protein La is regulated by AKT phosphorylation
Kuehnert, J.
,
Sommer, G.
,
Zierk, A. W.
,
Fedarovich, A.
,
Brock, A.
,
Fedarovich, D.
,
Heise, T.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.39 MB
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english, 2015
24
Extendable blocking probe in reverse transcription for analysis of RNA variants with superior selectivity
Ho, T. H.
,
Dang, K. X.
,
Lintula, S.
,
Hotakainen, K.
,
Feng, L.
,
Olkkonen, V. M.
,
Verschuren, E. W.
,
Tenkanen, T.
,
Haglund, C.
,
Kolho, K.-L.
,
Stenman, U.-H.
,
Stenman, J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 781 KB
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english, 2015
25
A novel RNA molecular signature for activation of 2'-5' oligoadenylate synthetase-1
Vachon, V. K.
,
Calderon, B. M.
,
Conn, G. L.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.56 MB
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english, 2015
26
Specific recognition of guanines in non-duplex regions of nucleic acids with potassium tungstate and hydrogen peroxide
Mao, W.
,
Xu, X.
,
He, H.
,
Huang, R.
,
Chen, X.
,
Xiao, H.
,
Yu, Z.
,
Liu, Y.
,
Zhou, X.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.46 MB
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english, 2015
27
Identifying causal regulatory SNPs in ChIP-seq enhancers
Huang, D.
,
Ovcharenko, I.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.94 MB
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english, 2015
28
ARTD1-induced poly-ADP-ribose formation enhances PPAR ligand binding and co-factor exchange
Lehmann, M.
,
Pirinen, E.
,
Mirsaidi, A.
,
Kunze, F. A.
,
Richards, P. J.
,
Auwerx, J.
,
Hottiger, M. O.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.95 MB
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english, 2015
29
Multilayer regulatory mechanisms control cleavage factor I proteins in filamentous fungi
Rodriguez-Romero, J.
,
Franceschetti, M.
,
Bueno, E.
,
Sesma, A.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.17 MB
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english, 2015
30
Adhesin competence repressor (AdcR) from Streptococcus pyogenes controls adaptive responses to zinc limitation and contributes to virulence
Sanson, M.
,
Makthal, N.
,
Flores, A. R.
,
Olsen, R. J.
,
Musser, J. M.
,
Kumaraswami, M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.96 MB
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31
Nucleic Acids Research: Editorial Board
Journal:
Nucleic Acids Research
Year:
2015
File:
PDF, 1.04 MB
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2015
32
Depletion of REF/Aly alters gene expression and reduces RNA polymerase II occupancy
Stubbs, S. H.
,
Conrad, N. K.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.00 MB
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english, 2015
33
Identification of a pKa-regulating motif stabilizing imidazole-modified double-stranded DNA
Buyst, D.
,
Gheerardijn, V.
,
Feher, K.
,
Van Gasse, B.
,
Van Den Begin, J.
,
Martins, J. C.
,
Madder, A.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.16 MB
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english, 2015
34
DEEP: a general computational framework for predicting enhancers
Kleftogiannis, D.
,
Kalnis, P.
,
Bajic, V. B.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.38 MB
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english, 2015
35
Bi-specific splice-switching PMO oligonucleotides conjugated via a single peptide active in a mouse model of Duchenne muscular dystrophy
Shabanpoor, F.
,
McClorey, G.
,
Saleh, A. F.
,
Jarver, P.
,
Wood, M. J. A.
,
Gait, M. J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.59 MB
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english, 2015
36
Mg2+-dependent conformational changes and product release during DNA-catalyzed RNA ligation monitored by Bimane fluorescence
Turriani, E.
,
Hobartner, C.
,
Jovin, T. M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.11 MB
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english, 2015
37
The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli
Srinivasan, R.
,
Scolari, V. F.
,
Lagomarsino, M. C.
,
Seshasayee, A. S. N.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.86 MB
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english, 2015
38
Operator recognition by the ROK transcription factor family members, NagC and Mlc
Brechemier-Baey, D.
,
Dominguez-Ramirez, L.
,
Oberto, J.
,
Plumbridge, J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.16 MB
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english, 2015
39
Regulation of anti-sense transcription by Mot1p and NC2 via removal of TATA-binding protein (TBP) from the 3'-end of genes
Koster, M. J. E.
,
Timmers, H. T. M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.90 MB
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english, 2015
40
Comprehensive discovery of DNA motifs in 349 human cells and tissues reveals new features of motifs
Zheng, Y.
,
Li, X.
,
Hu, H.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.58 MB
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english, 2015
41
Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition
Kuznetsov, N. A.
,
Bergonzo, C.
,
Campbell, A. J.
,
Li, H.
,
Mechetin, G. V.
,
de los Santos, C.
,
Grollman, A. P.
,
Fedorova, O. S.
,
Zharkov, D. O.
,
Simmerling, C.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.41 MB
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english, 2015
42
Assessing the gene regulatory properties of Argonaute-bound small RNAs of diverse genomic origin
Thomson, D. W.
,
Pillman, K. A.
,
Anderson, M. L.
,
Lawrence, D. M.
,
Toubia, J.
,
Goodall, G. J.
,
Bracken, C. P.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.87 MB
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english, 2015
43
NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis
Gao, W.
,
Liu, W.
,
Zhao, M.
,
Li, W.-X.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.65 MB
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english, 2015
44
Roles of PCNA ubiquitination and TLS polymerases and in the bypass of methyl methanesulfonate-induced DNA damage
Wit, N.
,
Buoninfante, O. A.
,
van den Berk, P. C. M.
,
Jansen, J. G.
,
Hogenbirk, M. A.
,
de Wind, N.
,
Jacobs, H.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.06 MB
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english, 2015
45
Microarrays for identifying binding sites and probing structure of RNAs
Kierzek, R.
,
Turner, D. H.
,
Kierzek, E.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.16 MB
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english, 2015
46
Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes
Tu, S.
,
Wu, M. Z.
,
Wang, J.
,
Cutter, A. D.
,
Weng, Z.
,
Claycomb, J. M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.38 MB
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english, 2015
47
The histone demethylase enzyme KDM3A is a key estrogen receptor regulator in breast cancer
Wade, M. A.
,
Jones, D.
,
Wilson, L.
,
Stockley, J.
,
Coffey, K.
,
Robson, C. N.
,
Gaughan, L.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 4.00 MB
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english, 2015
48
Elimination of cap structures generated by mRNA decay involves the new scavenger mRNA decapping enzyme Aph1/FHIT together with DcpS
Taverniti, V.
,
Seraphin, B.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.00 MB
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english, 2015
49
Synergic interplay of the La motif, RRM1 and the interdomain linker of LARP6 in the recognition of collagen mRNA expands the RNA binding repertoire of the La module
Martino, L.
,
Pennell, S.
,
Kelly, G.
,
Busi, B.
,
Brown, P.
,
Atkinson, R. A.
,
Salisbury, N. J. H.
,
Ooi, Z.-H.
,
See, K.-W.
,
Smerdon, S. J.
,
Alfano, C.
,
Bui, T. T. T.
,
Conte, M. R.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 3.34 MB
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english, 2015
50
Rescue of splicing-mediated intron loss maximizes expression in lentiviral vectors containing the human ubiquitin C promoter
Cooper, A. R.
,
Lill, G. R.
,
Gschweng, E. H.
,
Kohn, D. B.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 946 KB
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english, 2015
51
Bacterial initiators form dynamic filaments on single-stranded DNA monomer by monomer
Cheng, H.-M.
,
Groger, P.
,
Hartmann, A.
,
Schlierf, M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.99 MB
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english, 2015
52
Flexibility and structural conservation in a c-KIT G-quadruplex
Wei, D.
,
Husby, J.
,
Neidle, S.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 6.26 MB
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english, 2015
53
CSB interacts with SNM1A and promotes DNA interstrand crosslink processing
Iyama, T.
,
Lee, S. Y.
,
Berquist, B. R.
,
Gileadi, O.
,
Bohr, V. A.
,
Seidman, M. M.
,
McHugh, P. J.
,
Wilson, D. M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 5.64 MB
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english, 2015
54
HIV-1 nucleocapsid and ESCRT-component Tsg101 interplay prevents HIV from turning into a DNA-containing virus
Chamontin, C.
,
Rassam, P.
,
Ferrer, M.
,
Racine, P.-J.
,
Neyret, A.
,
Laine, S.
,
Milhiet, P.-E.
,
Mougel, M.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 2.47 MB
Your tags:
english, 2015
55
Leveraging cross-link modification events in CLIP-seq for motif discovery
Bahrami-Samani, E.
,
Penalva, L. O. F.
,
Smith, A. D.
,
Uren, P. J.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 628 KB
Your tags:
english, 2015
56
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
Sterling, C. H.
,
Veksler-Lublinsky, I.
,
Ambros, V.
Journal:
Nucleic Acids Research
Year:
2015
Language:
english
File:
PDF, 1.02 MB
Your tags:
english, 2015
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