Volume 43; Issue 8

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Nucleic Acids Research
Volume 43; Issue 8

Nucleic Acids Research

Volume 43; Issue 8

1

Highly efficient CRISPR/Cas9-mediated TAR cloning of genes and chromosomal loci from complex genomes in yeast

Lee, N. C. O., Larionov, V., Kouprina, N.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

2

Inferential modeling of 3D chromatin structure

Wang, S., Xu, J., Zeng, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.57 MB

english, 2015

3

The interaction of mycobacterial protein Rv2966c with host chromatin is mediated through non-CpG methylation and histone H3/H4 binding

Sharma, G., Upadhyay, S., Srilalitha, M., Nandicoori, V. K., Khosla, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 12.99 MB

english, 2015

4

Modeling the relationship of epigenetic modifications to transcription factor binding

Liu, L., Jin, G., Zhou, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.40 MB

english, 2015

5

Gene-specific cell labeling using MiMIC transposons

Gnerer, J. P., Venken, K. J. T., Dierick, H. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 7.19 MB

english, 2015

6

The structural impact of DNA mismatches

Rossetti, G., Dans, P. D., Gomez-Pinto, I., Ivani, I., Gonzalez, C., Orozco, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 5.95 MB

english, 2015

7

Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria meningitidis

Seib, K. L., Jen, F. E.- C., Tan, A., Scott, A. L., Kumar, R., Power, P. M., Chen, L.-T., Wu, H.-J., Wang, A. H.- J., Hill, D. M. C., Luyten, Y. A., Morgan, R. D., Roberts, R. J., Maiden, M. C. J., Bo

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.21 MB

english, 2015

8

Heme activation by DNA: isoguanine pentaplexes, but not quadruplexes, bind heme and enhance its oxidative activity

Shumayrikh, N., Huang, Y. C., Sen, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.30 MB

english, 2015

9

The hexameric structure of the human mitochondrial replicative helicase Twinkle

Fernandez-Millan, P., Lazaro, M., Cans z-Arda, irin, Gerhold, J. M., Rajala, N., Schmitz, C.-A., Silva-Espina, C., Gil, D., Bernado, P., Valle, M., Spelbrink, J. N., Sola, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.79 MB

english, 2015

10

CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses

Haberle, V., Forrest, A. R. R., Hayashizaki, Y., Carninci, P., Lenhard, B.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 722 KB

english, 2015

11

RNA polymerase II pausing can be retained or acquired during activation of genes involved in the epithelial to mesenchymal transition

Samarakkody, A., Abbas, A., Scheidegger, A., Warns, J., Nnoli, O., Jokinen, B., Zarns, K., Kubat, B., Dhasarathy, A., Nechaev, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 7.64 MB

english, 2015

12

A functional screen identifies miRNAs that inhibit DNA repair and sensitize prostate cancer cells to ionizing radiation

Hatano, K., Kumar, B., Zhang, Y., Coulter, J. B., Hedayati, M., Mears, B., Ni, X., Kudrolli, T. A., Chowdhury, W. H., Rodriguez, R., DeWeese, T. L., Lupold, S. E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

13

RNA editing by T7 RNA polymerase bypasses InDel mutations causing unexpected phenotypic changes

Wons, E., Furmanek-Blaszk, B., Sektas, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.64 MB

english, 2015

14

A universal strategy for regulating mRNA translation in prokaryotic and eukaryotic cells

Cao, J., Arha, M., Sudrik, C., Mukherjee, A., Wu, X., Kane, R. S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.34 MB

english, 2015

15

Selective inhibition of miR-21 by phage display screened peptide

Bose, D., Nahar, S., Rai, M. K., Ray, A., Chakraborty, K., Maiti, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.68 MB

english, 2015

16

Following the footprints of polymorphic inversions on SNP data: from detection to association tests

Caceres, A., Gonzalez, J. R.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.52 MB

english, 2015

17

The nucleoporin Mlp2 is involved in chromosomal distribution during mitosis in trypanosomatids

Morelle, C., Sterkers, Y., Crobu, L., MBang-Benet, D.-E., Kuk, N., Portales, P., Bastien, P., Pages, M., Lachaud, L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 16.35 MB

english, 2015

18

Gadd45a promotes DNA demethylation through TDG

Li, Z., Gu, T.-P., Weber, A. R., Shen, J.-Z., Li, B.-Z., Xie, Z.-G., Yin, R., Guo, F., Liu, X., Tang, F., Wang, H., Schar, P., Xu, G.-L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.58 MB

english, 2015

19

Distribution of DNA-condensing protein complexes in the adenovirus core

Perez-Berna, A. J., Marion, S., Chichon, F. J., Fernandez, J. J., Winkler, D. C., Carrascosa, J. L., Steven, A. C., iber, A., San Martin, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.62 MB

english, 2015

20

Nucleosomes undergo slow spontaneous gaping

Ngo, T. T. M., Ha, T.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

21

Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana

Le, T. N., Miyazaki, Y., Takuno, S., Saze, H.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

22

Reconstructing genome-scale metabolic models with merlin

Dias, O., Rocha, M., Ferreira, E. C., Rocha, I.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.61 MB

english, 2015

23

Significance of ligand interactions involving Hop2-Mnd1 and the RAD51 and DMC1 recombinases in homologous DNA repair and XX ovarian dysgenesis

Zhao, W., Sung, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.14 MB

english, 2015

24

Effects of Hfq on the conformation and compaction of DNA

Jiang, K., Zhang, C., Guttula, D., Liu, F., van Kan, J. A., Lavelle, C., Kubiak, K., Malabirade, A., Lapp, A., Arluison, V., van der Maarel, J. R. C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

25

Disruption of PARP1 function inhibits base excision repair of a sub-set of DNA lesions

Reynolds, P., Cooper, S., Lomax, M., O'Neill, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

26

Ad 2.0: a novel recombineering platform for high-throughput generation of tailored adenoviruses

Muck-Hausl, M., Solanki, M., Zhang, W., Ruzsics, Z., Ehrhardt, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

27

A rapid and sensitive high-throughput screening method to identify compounds targeting protein-nucleic acids interactions

Alonso, N., Guillen, R., Chambers, J. W., Leng, F.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.00 MB

english, 2015

28

Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism

Blatti, C., Kazemian, M., Wolfe, S., Brodsky, M., Sinha, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

29

Splicing factor SRSF1 negatively regulates alternative splicing of MDM2 under damage

Comiskey, D. F., Jacob, A. G., Singh, R. K., Tapia-Santos, A. S., Chandler, D. S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.49 MB

english, 2015

30

Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana

Merret, R., Nagarajan, V. K., Carpentier, M.-C., Park, S., Favory, J.-J., Descombin, J., Picart, C., Charng, Y.-y., Green, P. J., Deragon, J.-M., Bousquet-Antonelli, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 7.15 MB

english, 2015

31

The feedback control of UPF3 is crucial for RNA surveillance in plants

Degtiar, E., Fridman, A., Gottlieb, D., Vexler, K., Berezin, I., Farhi, R., Golani, L., Shaul, O.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 7.01 MB

english, 2015

32

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit

Ream, T. S., Haag, J. R., Pontvianne, F., Nicora, C. D., Norbeck, A. D., Pa a-Toli , L., Pikaard, C. S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 8.07 MB

english, 2015

33

The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures

Zhou, J., Fleming, A. M., Averill, A. M., Burrows, C. J., Wallace, S. S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.87 MB

english, 2015

34

SubmiRine: assessing variants in microRNA targets using clinical genomic data sets

Maxwell, E. K., Campbell, J. D., Spira, A., Baxevanis, A. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.54 MB

english, 2015

35

Regulation of yeast DNA polymerase -mediated strand displacement synthesis by 5'-flaps

Koc, K. N., Stodola, J. L., Burgers, P. M., Galletto, R.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.95 MB

english, 2015

36

Heterogeneous dynamics in DNA site discrimination by the structurally homologous DNA-binding domains of ETS-family transcription factors

He, G., Tolic, A., Bashkin, J. K., Poon, G. M. K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

37

Differences in genome-wide repeat sequence instability conferred by proofreading and mismatch repair defects

Lujan, S. A., Clark, A. B., Kunkel, T. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 874 KB

english, 2015

38

Nuclear pore components affect distinct stages of intron-containing gene expression

Bonnet, A., Bretes, H., Palancade, B.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.77 MB

english, 2015

39

Uncoupling histone turnover from transcription-associated histone H3 modifications

Ferrari, P., Strubin, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 745 KB

english, 2015

40

A common tRNA modification at an unusual location: the discovery of wyosine biosynthesis in mitochondria

Sample, P. J., Ko eny, L., Paris, Z., Gaston, K. W., Rubio, M. A. T., Fleming, I. M. C., Hinger, S., Horakova, E., Limbach, P. A., Luke , J., Alfonzo, J. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.30 MB

english, 2015

41

An update on LNCipedia: a database for annotated human lncRNA sequences

Volders, P. J., Verheggen, K., Menschaert, G., Vandepoele, K., Martens, L., Vandesompele, J., Mestdagh, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 580 KB

english, 2015

42

Molecular crowding enhances facilitated diffusion of two human DNA glycosylases

Cravens, S. L., Schonhoft, J. D., Rowland, M. M., Rodriguez, A. A., Anderson, B. G., Stivers, J. T.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.16 MB

english, 2015

43

Nucleic Acids Research: Editorial Board

Journal:

Nucleic Acids Research

Year:

2015

File:

PDF, 1.61 MB

2015

44

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression

Horton, J. R., Zhang, X., Blumenthal, R. M., Cheng, X.

Journal:

Nucleic Acids Research

Year:

2015

File:

PDF, 8.19 MB

2015

45

Are mutagenic non D-loop direct repeat motifs in mitochondrial DNA under a negative selection pressure?

Lakshmanan, L. N., Gruber, J., Halliwell, B., Gunawan, R.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

46

Structures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression

Horton, J. R., Zhang, X., Blumenthal, R. M., Cheng, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 8.19 MB

english, 2015

47

Subscriptions

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 62 KB

english, 2015

48

Active displacement of RecA filaments by UvrD translocase activity

Petrova, V., Chen, S. H., Molzberger, E. T., Tomko, E., Chitteni-Pattu, S., Jia, H., Ordabayev, Y., Lohman, T. M., Cox, M. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 12.66 MB

english, 2015

49

RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3'-end extended forms of snRNAs

Hrossova, D., Sikorsky, T., Potesil, D., Bartosovic, M., Pasulka, J., Zdrahal, Z., Stefl, R., Vanacova, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.57 MB

english, 2015

50

Nucleic Acids Research: VOLUME 43 ISSUE 8 2015

Journal:

Nucleic Acids Research

Year:

2015

File:

PDF, 3.63 MB

2015