Volume 43; Issue D1

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Nucleic Acids Research
Volume 43; Issue D1

Nucleic Acids Research

Volume 43; Issue D1

1

Mouse Tumor Biology (MTB): a database of mouse models for human cancer

Bult, C. J., Krupke, D. M., Begley, D. A., Richardson, J. E., Neuhauser, S. B., Sundberg, J. P., Eppig, J. T.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

2

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

Shameer, S., Logan-Klumpler, F. J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., Boshart, M., Berriman, M., Breitling, R., Bringaud, F., Butikofer, P., Cattanach, A. M., Bannerman-Chukualim, B., C

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.05 MB

english, 2015

3

RaftProt: mammalian lipid raft proteome database

Shah, A., Chen, D., Boda, A. R., Foster, L. J., Davis, M. J., Hill, M. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 412 KB

english, 2015

4

Ensembl 2015

Cunningham, F., Amode, M. R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S., Gil, L., Giron, C. G., Gordon, L., Hourlier, T., Hunt, S. E., J

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

5

KnotProt: a database of proteins with knots and slipknots

Jamroz, M., Niemyska, W., Rawdon, E. J., Stasiak, A., Millett, K. C., Su kowski, P., Sulkowska, J. I.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

6

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression

Jiang, Q., Wang, J., Wu, X., Ma, R., Zhang, T., Jin, S., Han, Z., Tan, R., Peng, J., Liu, G., Li, Y., Wang, Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.84 MB

english, 2015

7

INFRAFRONTIER--providing mutant mouse resources as research tools for the international scientific community

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

8

Gene Ontology Consortium: going forward

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.46 MB

english, 2015

9

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

Kriventseva, E. V., Tegenfeldt, F., Petty, T. J., Waterhouse, R. M., Simao, F. A., Pozdnyakov, I. A., Ioannidis, P., Zdobnov, E. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

10

The Addgene repository: an international nonprofit plasmid and data resource

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

11

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

Reddy, T. B. K., Thomas, A. D., Stamatis, D., Bertsch, J., Isbandi, M., Jansson, J., Mallajosyula, J., Pagani, I., Lobos, E. A., Kyrpides, N. C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

12

CancerPPD: a database of anticancer peptides and proteins

Tyagi, A., Tuknait, A., Anand, P., Gupta, S., Sharma, M., Mathur, D., Joshi, A., Singh, S., Gautam, A., Raghava, G. P. S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.58 MB

english, 2015

13

GeneFriends: a human RNA-seq-based gene and transcript co-expression database

van Dam, S., Craig, T., de Magalhaes, J. P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

14

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

Gonzalez-Galarza, F. F., Takeshita, L. Y. C., Santos, E. J. M., Kempson, F., Maia, M. H. T., Silva, A. L. S. d., Silva, A. L. T. e., Ghattaoraya, G. S., Alfirevic, A., Jones, A. R., Middleton, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

15

The tmRNA website

Hudson, C. M., Williams, K. P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 141 KB

english, 2015

16

PNRD: a plant non-coding RNA database

Yi, X., Zhang, Z., Ling, Y., Xu, W., Su, Z.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

17

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

Minguez, P., Letunic, I., Parca, L., Garcia-Alonso, L., Dopazo, J., Huerta-Cepas, J., Bork, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.84 MB

english, 2015

18

The InterPro protein families database: the classification resource after 15 years

Mitchell, A., Chang, H.-Y., Daugherty, L., Fraser, M., Hunter, S., Lopez, R., McAnulla, C., McMenamin, C., Nuka, G., Pesseat, S., Sangrador-Vegas, A., Scheremetjew, M., Rato, C., Yong, S.-Y., Bateman,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.36 MB

english, 2015

19

PLAZA 3.0: an access point for plant comparative genomics

Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inze, D., Mueller-Roeber, B., Vandepoele, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.86 MB

english, 2015

20

The Candidate Cancer Gene Database: a database of cancer driver genes from forward genetic screens in mice

Abbott, K. L., Nyre, E. T., Abrahante, J., Ho, Y.-Y., Isaksson Vogel, R., Starr, T. K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 963 KB

english, 2015

21

Helminth.net: expansions to Nematode.net and an introduction to Trematode.net

Martin, J., Rosa, B. A., Ozersky, P., Hallsworth-Pepin, K., Zhang, X., Bhonagiri-Palsikar, V., Tyagi, R., Wang, Q., Choi, Y.-J., Gao, X., McNulty, S. N., Brindley, P. J., Mitreva, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.19 MB

english, 2015

22

STRING v10: protein-protein interaction networks, integrated over the tree of life

Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerta-Cepas, J., Simonovic, M., Roth, A., Santos, A., Tsafou, K. P., Kuhn, M., Bork, P., Jensen, L. J., von Mering, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.26 MB

english, 2015

23

HIV-1, human interaction database: current status and new features

Ako-Adjei, D., Fu, W., Wallin, C., Katz, K. S., Song, G., Darji, D., Brister, J. R., Ptak, R. G., Pruitt, K. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 799 KB

english, 2015

24

ViRBase: a resource for virus-host ncRNA-associated interactions

Li, Y., Wang, C., Miao, Z., Bi, X., Wu, D., Jin, N., Wang, L., Wu, H., Qian, K., Li, C., Zhang, T., Zhang, C., Yi, Y., Lai, H., Hu, Y., Cheng, L., Leung, K.-S., Li, X., Zhang, F., Li, K., Li, X., Wang

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

25

MethHC: a database of DNA methylation and gene expression in human cancer

Huang, W.-Y., Hsu, S.-D., Huang, H.-Y., Sun, Y.-M., Chou, C.-H., Weng, S.-L., Huang, H.-D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

26

DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation

Blin, K., Dieterich, C., Wurmus, R., Rajewsky, N., Landthaler, M., Akalin, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.90 MB

english, 2015

27

Expanded microbial genome coverage and improved protein family annotation in the COG database

Galperin, M. Y., Makarova, K. S., Wolf, Y. I., Koonin, E. V.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.66 MB

english, 2015

28

DoGSD: the dog and wolf genome SNP database

Bai, B., Zhao, W.-M., Tang, B.-X., Wang, Y.-Q., Wang, L., Zhang, Z., Yang, H.-C., Liu, Y.-H., Zhu, J.-W., Irwin, D. M., Wang, G.-D., Zhang, Y.-P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.22 MB

english, 2015

29

SMART: recent updates, new developments and status in 2015

Letunic, I., Doerks, T., Bork, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

30

BioModels: ten-year anniversary

Chelliah, V., Juty, N., Ajmera, I., Ali, R., Dumousseau, M., Glont, M., Hucka, M., Jalowicki, G., Keating, S., Knight-Schrijver, V., Lloret-Villas, A., Natarajan, K. N., Pettit, J.-B., Rodriguez, N.,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

31

Super Natural II--a database of natural products

Banerjee, P., Erehman, J., Gohlke, B.-O., Wilhelm, T., Preissner, R., Dunkel, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

32

DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data

Suzuki, A., Wakaguri, H., Yamashita, R., Kawano, S., Tsuchihara, K., Sugano, S., Suzuki, Y., Nakai, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.46 MB

english, 2015

33

Expediting topology data gathering for the TOPDB database

Dobson, L., Lango, T., Remenyi, I., Tusnady, G. E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 957 KB

english, 2015

34

Europe PMC: a full-text literature database for the life sciences and platform for innovation

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

35

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding

Fernandez-Pozo, N., Menda, N., Edwards, J. D., Saha, S., Tecle, I. Y., Strickler, S. R., Bombarely, A., Fisher-York, T., Pujar, A., Foerster, H., Yan, A., Mueller, L. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 100 KB

english, 2015

36

EHFPI: a database and analysis resource of essential host factors for pathogenic infection

Liu, Y., Xie, D., Han, L., Bai, H., Li, F., Wang, S., Bo, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.61 MB

english, 2015

37

CFam: a chemical families database based on iterative selection of functional seeds and seed-directed compound clustering

Zhang, C., Tao, L., Qin, C., Zhang, P., Chen, S., Zeng, X., Xu, F., Chen, Z., Yang, S. Y., Chen, Y. Z.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.71 MB

english, 2015

38

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Fortelny, N., Yang, S., Pavlidis, P., Lange, P. F., Overall, C. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

39

Type material in the NCBI Taxonomy Database

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.12 MB

english, 2015

40

EzCatDB: the enzyme reaction database, 2015 update

Nagano, N., Nakayama, N., Ikeda, K., Fukuie, M., Yokota, K., Doi, T., Kato, T., Tomii, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

41

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions

Vlachos, I. S., Paraskevopoulou, M. D., Karagkouni, D., Georgakilas, G., Vergoulis, T., Kanellos, I., Anastasopoulos, I.-L., Maniou, S., Karathanou, K., Kalfakakou, D., Fevgas, A., Dalamagas, T., Hatz

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 957 KB

english, 2015

42

PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands

Yoon, S. H., Park, Y.-K., Kim, J. F.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

43

REBASE--a database for DNA restriction and modification: enzymes, genes and genomes

Roberts, R. J., Vincze, T., Posfai, J., Macelis, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 165 KB

english, 2015

44

tRFdb: a database for transfer RNA fragments

Kumar, P., Mudunuri, S. B., Anaya, J., Dutta, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 232 KB

english, 2015

45

DBTMEE: a database of transcriptome in mouse early embryos

Park, S.-J., Shirahige, K., Ohsugi, M., Nakai, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.39 MB

english, 2015

46

A series of PDB-related databanks for everyday needs

Touw, W. G., Baakman, C., Black, J., te Beek, T. A. H., Krieger, E., Joosten, R. P., Vriend, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

47

Beyond protein expression, MOPED goes multi-omics

Montague, E., Janko, I., Stanberry, L., Lee, E., Choiniere, J., Anderson, N., Stewart, E., Broomall, W., Higdon, R., Kolker, N., Kolker, E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

48

The UCSC Cancer Genomics Browser: update 2015

Goldman, M., Craft, B., Swatloski, T., Cline, M., Morozova, O., Diekhans, M., Haussler, D., Zhu, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

49

The BioGRID interaction database: 2015 update

Chatr-aryamontri, A., Breitkreutz, B.-J., Oughtred, R., Boucher, L., Heinicke, S., Chen, D., Stark, C., Breitkreutz, A., Kolas, N., O'Donnell, L., Reguly, T., Nixon, J., Ramage, L., Winter, A., Sellam

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

50

An update on LNCipedia: a database for annotated human lncRNA sequences

Volders, P.-J., Verheggen, K., Menschaert, G., Vandepoele, K., Martens, L., Vandesompele, J., Mestdagh, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 387 KB

english, 2015

51

MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle

Huang, Z., Ma, L., Wang, Y., Pan, Z., Ren, J., Liu, Z., Xue, Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.40 MB

english, 2015

52

The IPD and IMGT/HLA database: allele variant databases

Robinson, J., Halliwell, J. A., Hayhurst, J. D., Flicek, P., Parham, P., Marsh, S. G. E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

53

OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders

Amberger, J. S., Bocchini, C. A., Schiettecatte, F., Scott, A. F., Hamosh, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 6.20 MB

english, 2015

54

PomBase 2015: updates to the fission yeast database

McDowall, M. D., Harris, M. A., Lock, A., Rutherford, K., Staines, D. M., Bahler, J., Kersey, P. J., Oliver, S. G., Wood, V.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

55

GBshape: a genome browser database for DNA shape annotations

Chiu, T.-P., Yang, L., Zhou, T., Main, B. J., Parker, S. C. J., Nuzhdin, S. V., Tullius, T. D., Rohs, R.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.14 MB

english, 2015

56

The GOA database: Gene Ontology annotation updates for 2015

Huntley, R. P., Sawford, T., Mutowo-Meullenet, P., Shypitsyna, A., Bonilla, C., Martin, M. J., O'Donovan, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

57

APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals

You, L., Wu, J., Feng, Y., Fu, Y., Guo, Y., Long, L., Zhang, H., Luan, Y., Tian, P., Chen, L., Huang, G., Huang, S., Li, Y., Li, J., Chen, C., Zhang, Y., Chen, S., Xu, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.51 MB

english, 2015

58

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse

Gong, J., Liu, W., Zhang, J., Miao, X., Guo, A.-Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

59

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

Karpinka, J. B., Fortriede, J. D., Burns, K. A., James-Zorn, C., Ponferrada, V. G., Lee, J., Karimi, K., Zorn, A. M., Vize, P. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.67 MB

english, 2015

60

TFClass: a classification of human transcription factors and their rodent orthologs

Wingender, E., Schoeps, T., Haubrock, M., Donitz, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

61

PlasmoGEM, a database supporting a community resource for large-scale experimental genetics in malaria parasites

Schwach, F., Bushell, E., Gomes, A. R., Anar, B., Girling, G., Herd, C., Rayner, J. C., Billker, O.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

62

arrayMap 2014: an updated cancer genome resource

Cai, H., Gupta, S., Rath, P., Ai, N., Baudis, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 481 KB

english, 2015

63

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

dos Santos, G., Schroeder, A. J., Goodman, J. L., Strelets, V. B., Crosby, M. A., Thurmond, J., Emmert, D. B., Gelbart, W. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

64

Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing

Yang, X., Li, M., Liu, Q., Zhang, Y., Qian, J., Wan, X., Wang, A., Zhang, H., Zhu, C., Lu, X., Mao, Y., Sang, X., Zhao, H., Zhao, Y., Zhang, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

65

PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

Ito, J.-i., Ikeda, K., Yamada, K., Mizuguchi, K., Tomii, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.98 MB

english, 2015

66

The human DEPhOsphorylation database DEPOD: a 2015 update

Duan, G., Li, X., Kohn, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

67

sc-PDB: a 3D-database of ligandable binding sites--10 years on

Desaphy, J., Bret, G., Rognan, D., Kellenberger, E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.65 MB

english, 2015

68

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

Hume, M. A., Barrera, L. A., Gisselbrecht, S. S., Bulyk, M. L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

69

Platinum: a database of experimentally measured effects of mutations on structurally defined protein-ligand complexes

Pires, D. E. V., Blundell, T. L., Ascher, D. B.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1005 KB

english, 2015

70

Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures

Ahmed, A., Smith, R. D., Clark, J. J., Dunbar, J. B., Carlson, H. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.85 MB

english, 2015

71

RNAcentral: an international database of ncRNA sequences

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

72

Rfam 12.0: updates to the RNA families database

Nawrocki, E. P., Burge, S. W., Bateman, A., Daub, J., Eberhardt, R. Y., Eddy, S. R., Floden, E. W., Gardner, P. P., Jones, T. A., Tate, J., Finn, R. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

73

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data

Guirimand, T., Delmotte, S., Navratil, V.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

74

PyIgClassify: a database of antibody CDR structural classifications

Adolf-Bryfogle, J., Xu, Q., North, B., Lehmann, A., Dunbrack, R. L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

75

CMPD: cancer mutant proteome database

Huang, P.-J., Lee, C.-C., Tan, B. C.-M., Yeh, Y.-M., Julie Chu, L., Chen, T.-W., Chang, K.-P., Lee, C.-Y., Gan, R.-C., Liu, H., Tang, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.84 MB

english, 2015

76

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation

Chen, Y.-J., Lu, C.-T., Su, M.-G., Huang, K.-Y., Ching, W.-C., Yang, H.-H., Liao, Y.-C., Chen, Y.-J., Lee, T.-Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

77

The SUPERFAMILY 1.75 database in 2014: a doubling of data

Oates, M. E., Stahlhacke, J., Vavoulis, D. V., Smithers, B., Rackham, O. J. L., Sardar, A. J., Zaucha, J., Thurlby, N., Fang, H., Gough, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.92 MB

english, 2015

78

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

Quek, X. C., Thomson, D. W., Maag, J. L. V., Bartonicek, N., Signal, B., Clark, M. B., Gloss, B. S., Dinger, M. E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 320 KB

english, 2015

79

UniProt: a hub for protein information

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.26 MB

english, 2015

80

NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods

Jensen, K., Panagiotou, G., Kouskoumvekaki, I.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

81

VaDE: a manually curated database of reproducible associations between various traits and human genomic polymorphisms

Nagai, Y., Takahashi, Y., Imanishi, T.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

82

AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors

Zhang, H.-M., Liu, T., Liu, C.-J., Song, S., Zhang, X., Liu, W., Jia, H., Xue, Y., Guo, A.-Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.91 MB

english, 2015

83

The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource

Craig, T., Smelick, C., Tacutu, R., Wuttke, D., Wood, S. H., Stanley, H., Janssens, G., Savitskaya, E., Moskalev, A., Arking, R., de Magalhaes, J. P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

84

Open TG-GATEs: a large-scale toxicogenomics database

Igarashi, Y., Nakatsu, N., Yamashita, T., Ono, A., Ohno, Y., Urushidani, T., Yamada, H.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

85

The immune epitope database (IEDB) 3.0

Vita, R., Overton, J. A., Greenbaum, J. A., Ponomarenko, J., Clark, J. D., Cantrell, J. R., Wheeler, D. K., Gabbard, J. L., Hix, D., Sette, A., Peters, B.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.77 MB

english, 2015

86

The UCSC Genome Browser database: 2015 update

Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

87

Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes

Hudson, C. M., Lau, B. Y., Williams, K. P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 334 KB

english, 2015

88

diArk - the database for eukaryotic genome and transcriptome assemblies in 2014

Kollmar, M., Kollmar, L., Hammesfahr, B., Simm, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.47 MB

english, 2015

89

Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs

Wang, D., Yu, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.53 MB

english, 2015

90

The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools

Dreos, R., Ambrosini, G., Perier, R. C., Bucher, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 977 KB

english, 2015

91

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins

Matlock, M. K., Holehouse, A. S., Naegle, K. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.35 MB

english, 2015

92

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements

Altenhoff, A. M., kunca, N., Glover, N., Train, C.-M., Sueki, A., Pili ota, I., Gori, K., Tomiczek, B., Muller, S., Redestig, H., Gonnet, G. H., Dessimoz, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.76 MB

english, 2015

93

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

Zaag, R., Tamby, J. P., Guichard, C., Tariq, Z., Rigaill, G., Delannoy, E., Renou, J.-P., Balzergue, S., Mary-Huard, T., Aubourg, S., Martin-Magniette, M.-L., Brunaud, V.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.53 MB

english, 2015

94

euL1db: the European database of L1HS retrotransposon insertions in humans

Mir, A. A., Philippe, C., Cristofari, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 185 KB

english, 2015

95

MeT-DB: a database of transcriptome methylation in mammalian cells

Liu, H., Flores, M. A., Meng, J., Zhang, L., Zhao, X., Rao, M. K., Chen, Y., Huang, Y.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 737 KB

english, 2015

96

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

Uchiyama, I., Mihara, M., Nishide, H., Chiba, H.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.03 MB

english, 2015

97

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

Kibbe, W. A., Arze, C., Felix, V., Mitraka, E., Bolton, E., Fu, G., Mungall, C. J., Binder, J. X., Malone, J., Vasant, D., Parkinson, H., Schriml, L. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 835 KB

english, 2015

98

BRENDA in 2015: exciting developments in its 25th year of existence

Chang, A., Schomburg, I., Placzek, S., Jeske, L., Ulbrich, M., Xiao, M., Sensen, C. W., Schomburg, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

99

iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum

Donitz, J., Schmitt-Engel, C., Grossmann, D., Gerischer, L., Tech, M., Schoppmeier, M., Klingler, M., Bucher, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

100

The coffee genome hub: a resource for coffee genomes

Dereeper, A., Bocs, S., Rouard, M., Guignon, V., Ravel, S., Tranchant-Dubreuil, C., Poncet, V., Garsmeur, O., Lashermes, P., Droc, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.23 MB

english, 2015

101

CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities

Sanchez-Castillo, M., Ruau, D., Wilkinson, A. C., Ng, F. S. L., Hannah, R., Diamanti, E., Lombard, P., Wilson, N. K., Gottgens, B.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 171 KB

english, 2015

102

Content discovery and retrieval services at the European Nucleotide Archive

Silvester, N., Alako, B., Amid, C., Cerdeno-Tarraga, A., Cleland, I., Gibson, R., Goodgame, N., ten Hoopen, P., Kay, S., Leinonen, R., Li, W., Liu, X., Lopez, R., Pakseresht, N., Pallreddy, S., Plaist

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

103

miRDB: an online resource for microRNA target prediction and functional annotations

Wong, N., Wang, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.52 MB

english, 2015

104

The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome

Jenjaroenpun, P., Chew, C. S., Yong, T. P., Choowongkomon, K., Thammasorn, W., Kuznetsov, V. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

105

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Rose, P. W., Prli , A., Bi, C., Bluhm, W. F., Christie, C. H., Dutta, S., Green, R. K., Goodsell, D. S., Westbrook, J. D., Woo, J., Young, J., Zardecki, C., Berman, H. M., Bourne, P. E., Burley, S. K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.76 MB

english, 2015

106

Genomicus update 2015: KaryoView and MatrixView provide a genome-wide perspective to multispecies comparative genomics

Louis, A., Nguyen, N. T. T., Muffato, M., Roest Crollius, H.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 8.13 MB

english, 2015

107

MoonProt: a database for proteins that are known to moonlight

Mani, M., Chen, C., Amblee, V., Liu, H., Mathur, T., Zwicke, G., Zabad, S., Patel, B., Thakkar, J., Jeffery, C. J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

108

Cancer3D: understanding cancer mutations through protein structures

Porta-Pardo, E., Hrabe, T., Godzik, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

109

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

Santos, A., Wernersson, R., Jensen, L. J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 910 KB

english, 2015

110

The complex portal - an encyclopaedia of macromolecular complexes

Meldal, B. H. M., Forner-Martinez, O., Costanzo, M. C., Dana, J., Demeter, J., Dumousseau, M., Dwight, S. S., Gaulton, A., Licata, L., Melidoni, A. N., Ricard-Blum, S., Roechert, B., Skyzypek, M. S.,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

111

CDD: NCBI's conserved domain database

Marchler-Bauer, A., Derbyshire, M. K., Gonzales, N. R., Lu, S., Chitsaz, F., Geer, L. Y., Geer, R. C., He, J., Gwadz, M., Hurwitz, D. I., Lanczycki, C. J., Lu, F., Marchler, G. H., Song, J. S., Thanki

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

112

Gene: a gene-centered information resource at NCBI

Brown, G. R., Hem, V., Katz, K. S., Ovetsky, M., Wallin, C., Ermolaeva, O., Tolstoy, I., Tatusova, T., Pruitt, K. D., Maglott, D. R., Murphy, T. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

113

CATH: comprehensive structural and functional annotations for genome sequences

Sillitoe, I., Lewis, T. E., Cuff, A., Das, S., Ashford, P., Dawson, N. L., Furnham, N., Laskowski, R. A., Lee, D., Lees, J. G., Lehtinen, S., Studer, R. A., Thornton, J., Orengo, C. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

114

Genome3D: exploiting structure to help users understand their sequences

Lewis, T. E., Sillitoe, I., Andreeva, A., Blundell, T. L., Buchan, D. W. A., Chothia, C., Cozzetto, D., Dana, J. M., Filippis, I., Gough, J., Jones, D. T., Kelley, L. A., Kleywegt, G. J., Minneci, F.,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.39 MB

english, 2015

115

ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts

Frenkel-Morgenstern, M., Gorohovski, A., Vucenovic, D., Maestre, L., Valencia, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.91 MB

english, 2015

116

The Biobanking Analysis Resource Catalogue (BARCdb): a new research tool for the analysis of biobank samples

Galli, J., Oelrich, J., Taussig, M. J., Andreasson, U., Ortega-Paino, E., Landegren, U.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.99 MB

english, 2015

117

GenoBase: comprehensive resource database of Escherichia coli K-12

Otsuka, Y., Muto, A., Takeuchi, R., Okada, C., Ishikawa, M., Nakamura, K., Yamamoto, N., Dose, H., Nakahigashi, K., Tanishima, S., Suharnan, S., Nomura, W., Nakayashiki, T., Aref, W. G., Bochner, B. R

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.39 MB

english, 2015

118

GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes

Eicher, J. D., Landowski, C., Stackhouse, B., Sloan, A., Chen, W., Jensen, N., Lien, J.-P., Leslie, R., Johnson, A. D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 786 KB

english, 2015

119

ADReCS: an ontology database for aiding standardization and hierarchical classification of adverse drug reaction terms

Cai, M.-C., Xu, Q., Pan, Y.-J., Pan, W., Ji, N., Li, Y.-B., Jin, H.-J., Liu, K., Ji, Z.-L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

120

Updates in Rhea--a manually curated resource of biochemical reactions

Morgat, A., Axelsen, K. B., Lombardot, T., Alcantara, R., Aimo, L., Zerara, M., Niknejad, A., Belda, E., Hyka-Nouspikel, N., Coudert, E., Redaschi, N., Bougueleret, L., Steinbeck, C., Xenarios, I., Br

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

121

WDSPdb: a database for WD40-repeat proteins

Wang, Y., Hu, X.-J., Zou, X.-D., Wu, X.-H., Ye, Z.-Q., Wu, Y.-D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.77 MB

english, 2015

122

The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection

Galperin, M. Y., Rigden, D. J., Fernandez-Suarez, X. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 115 KB

english, 2015

123

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

Ma, L., Li, A., Zou, D., Xu, X., Xia, L., Yu, J., Bajic, V. B., Zhang, Z.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

124

SNP-Seek database of SNPs derived from 3000 rice genomes

Alexandrov, N., Tai, S., Wang, W., Mansueto, L., Palis, K., Fuentes, R. R., Ulat, V. J., Chebotarov, D., Zhang, G., Li, Z., Mauleon, R., Hamilton, R. S., McNally, K. L.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

125

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos

Cicin-Sain, D., Pulido, A. H., Crombach, A., Wotton, K. R., Jimenez-Guri, E., Taly, J.-F., Roma, G., Jaeger, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.30 MB

english, 2015

126

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

Sonnhammer, E. L. L., Ostlund, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

127

DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites

J kalski, M., Wakaguri, H., Kischka, T. G., Nishikawa, Y., Kawazu, S.-i., Matsubayashi, M., Kawahara, F., Tsuji, N., Cao, S., Sunaga, F., Xuan, X., Okubo, K., Igarashi, I., Tuda, J., Mongan, A. E., Es

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

128

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease

Shimoyama, M., De Pons, J., Hayman, G. T., Laulederkind, S. J. F., Liu, W., Nigam, R., Petri, V., Smith, J. R., Tutaj, M., Wang, S.-J., Worthey, E., Dwinell, M., Jacob, H.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

129

AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species

Lee, T., Yang, S., Kim, E., Ko, Y., Hwang, S., Shin, J., Shim, J. E., Shim, H., Kim, H., Kim, C., Lee, I.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.50 MB

english, 2015

130

PubAngioGen: a database and knowledge for angiogenesis and related diseases

Li, P., Liu, Y., Wang, H., He, Y., Wang, X., He, Y., Lv, F., Chen, H., Pang, X., Liu, M., Shi, T., Yi, Z.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

131

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

Hornbeck, P. V., Zhang, B., Murray, B., Kornhauser, J. M., Latham, V., Skrzypek, E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.29 MB

english, 2015

132

P2CS: updates of the prokaryotic two-component systems database

Ortet, P., Whitworth, D. E., Santaella, C., Achouak, W., Barakat, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

133

MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities

Launay, G., Salza, R., Multedo, D., Thierry-Mieg, N., Ricard-Blum, S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.82 MB

english, 2015

134

CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics

Zhang, Z., Shen, T., Rui, B., Zhou, W., Zhou, X., Shang, C., Xin, C., Liu, X., Li, G., Jiang, J., Li, C., Li, R., Han, M., You, S., Yu, G., Yi, Y., Wen, H., Liu, Z., Xie, X.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

135

Organ system heterogeneity DB: a database for the visualization of phenotypes at the organ system level

Mannil, D., Vogt, I., Prinz, J., Campillos, M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

136

IMGT(R), the international ImMunoGeneTics information system(R) 25 years on

Lefranc, M.-P., Giudicelli, V., Duroux, P., Jabado-Michaloud, J., Folch, G., Aouinti, S., Carillon, E., Duvergey, H., Houles, A., Paysan-Lafosse, T., Hadi-Saljoqi, S., Sasorith, S., Lefranc, G., Kossi

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

137

Genenames.org: the HGNC resources in 2015

Gray, K. A., Yates, B., Seal, R. L., Wright, M. W., Bruford, E. A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.30 MB

english, 2015

138

HAMAP in 2015: updates to the protein family classification and annotation system

Pedruzzi, I., Rivoire, C., Auchincloss, A. H., Coudert, E., Keller, G., de Castro, E., Baratin, D., Cuche, B. A., Bougueleret, L., Poux, S., Redaschi, N., Xenarios, I., Bridge, A.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

139

ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis

Veres, D. V., Gyurko, D. M., Thaler, B., Szalay, K. Z., Fazekas, D., Korcsmaros, T., Csermely, P.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.95 MB

english, 2015

140

The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes

Poelchau, M., Childers, C., Moore, G., Tsavatapalli, V., Evans, J., Lee, C.-Y., Lin, H., Lin, J.-W., Hackett, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

141

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

Stoddard, S. F., Smith, B. J., Hein, R., Roller, B. R. K., Schmidt, T. M.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

142

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

Forbes, S. A., Beare, D., Gunasekaran, P., Leung, K., Bindal, N., Boutselakis, H., Ding, M., Bamford, S., Cole, C., Ward, S., Kok, C. Y., Jia, M., De, T., Teague, J. W., Stratton, M. R., McDermott, U.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

143

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

Giraldo-Calderon, G. I., Emrich, S. J., MacCallum, R. M., Maslen, G., Dialynas, E., Topalis, P., Ho, N., Gesing, S., Madey, G., Collins, F. H., Lawson, D.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.44 MB

english, 2015

144

The Pathogen-Host Interactions database (PHI-base): additions and future developments

Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H., Hammond-Kosack, K. E.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

145

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

Peng, X., Thierry-Mieg, J., Thierry-Mieg, D., Nishida, A., Pipes, L., Bozinoski, M., Thomas, M. J., Kelly, S., Weiss, J. M., Raveendran, M., Muzny, D., Gibbs, R. A., Rogers, J., Schroth, G. P., Katze,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 380 KB

english, 2015

146

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities

Martinez-Garcia, E., Aparicio, T., Goni-Moreno, A., Fraile, S., de Lorenzo, V.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

147

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

Sehnal, D., Svobodova Va ekova, R., Pravda, L., Ionescu, C.-M., Geidl, S., Horsky, V., Jaiswal, D., Wimmerova, M., Ko a, J.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

148

VirusMentha: a new resource for virus-host protein interactions

Calderone, A., Licata, L., Cesareni, G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

149

BCCTBbp: the Breast Cancer Campaign Tissue Bank bioinformatics portal

Cutts, R. J., Guerra-Assuncao, J. A., Gadaleta, E., Dayem Ullah, A. Z., Chelala, C.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

150

ArrayExpress update--simplifying data submissions

Kolesnikov, N., Hastings, E., Keays, M., Melnichuk, O., Tang, Y. A., Williams, E., Dylag, M., Kurbatova, N., Brandizi, M., Burdett, T., Megy, K., Pilicheva, E., Rustici, G., Tikhonov, A., Parkinson, H

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 593 KB

english, 2015

151

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

Okamura, Y., Aoki, Y., Obayashi, T., Tadaka, S., Ito, S., Narise, T., Kinoshita, K.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 631 KB

english, 2015

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