Volume 44; Issue 5

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Nucleic Acids Research
Volume 44; Issue 5

Nucleic Acids Research

Volume 44; Issue 5

1

RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins

Arora, Mansi, Packard, Colin Z., Banerjee, Tapahsama, Parvin, Jeffrey D.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

2

Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA

Carson, Spencer, Wilson, James, Aksimentiev, Aleksei, Weigele, Peter R., Wanunu, Meni

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

3

Kinetic mechanism and fidelity of nick sealing by Escherichia coli NAD + -dependent DNA ligase (LigA)

Chauleau, Mathieu, Shuman, Stewart

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 5.39 MB

english, 2016

4

Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P

Brillante, Nadia, Gößringer, Markus, Lindenhofer, Dominik, Toth, Ursula, Rossmanith, Walter, Hartmann, Roland K.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

5

Multiplex pairwise assembly of array-derived DNA oligonucleotides

Klein, Jason C., Lajoie, Marc J., Schwartz, Jerrod J., Strauch, Eva-Maria, Nelson, Jorgen, Baker, David, Shendure, Jay

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.83 MB

english, 2016

6

Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae

Atias, Nir, Kupiec, Martin, Sharan, Roded

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 862 KB

english, 2016

7

LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR

Kim, Jiyoung, Abdelmohsen, Kotb, Yang, Xiaoling, De, Supriyo, Grammatikakis, Ioannis, Noh, Ji Heon, Gorospe, Myriam

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 5.10 MB

english, 2016

8

Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions

Capurso, Daniel, Bengtsson, Henrik, Segal, Mark R.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.08 MB

english, 2016

9

csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

Lun, Aaron T.L., Smyth, Gordon K.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.25 MB

english, 2016

10

Modeling co-occupancy of transcription factors using chromatin features

Liu, Liang, Zhao, Weiling, Zhou, Xiaobo

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.55 MB

english, 2016

11

Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes

Gudanis, Dorota, Popenda, Lukasz, Szpotkowski, Kamil, Kierzek, Ryszard, Gdaniec, Zofia

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.45 MB

english, 2016

12

Small activating RNA binds to the genomic target site in a seed-region-dependent manner

Meng, Xing, Jiang, Qian, Chang, Nannan, Wang, Xiaoxia, Liu, Chujun, Xiong, Jingwei, Cao, Huiqing, Liang, Zicai

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.23 MB

english, 2016

13

3CAPS – a structural AP–site analogue as a tool to investigate DNA base excision repair

Schuermann, David, Scheidegger, Simon P., Weber, Alain R., Bjørås, Magnar, Leumann, Christian J., Schär, Primo

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 6.98 MB

english, 2016

14

Next-generation bis-locked nucleic acids with stacking linker and 2′-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes

Geny, Sylvain, Moreno, Pedro M. D., Krzywkowski, Tomasz, Gissberg, Olof, Andersen, Nicolai K., Isse, Abdirisaq J., El-Madani, Amro M., Lou, Chenguang, Pabon, Y. Vladimir, Anderson, Brooke A., Zaghloul

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.43 MB

english, 2016

15

Delineation of metabolic gene clusters in plant genomes by chromatin signatures

Yu, Nan, Nützmann, Hans-Wilhelm, MacDonald, James T., Moore, Ben, Field, Ben, Berriri, Souha, Trick, Martin, Rosser, Susan J., Kumar, S. Vinod, Freemont, Paul S., Osbourn, Anne

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.13 MB

english, 2016

16

Biochemical characterization of a multi-drug resistant HIV-1 subtype AG reverse transcriptase: antagonism of AZT discrimination and excision pathways and sensitivity to RNase H inhibitors

Schneider, Anna, Corona, Angela, Spöring, Imke, Jordan, Mareike, Buchholz, Bernd, Maccioni, Elias, Di Santo, Roberto, Bodem, Jochen, Tramontano, Enzo, Wöhrl, Birgitta M.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.40 MB

english, 2016

17

G-quadruplexes and helicases

Mendoza, Oscar, Bourdoncle, Anne, Boulé, Jean-Baptiste, Brosh, Robert M., Mergny, Jean-Louis

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.06 MB

english, 2016

18

S. cerevisiae Mre11 recruits conjugated SUMO moieties to facilitate the assembly and function of the Mre11-Rad50-Xrs2 complex

Chen, Yu-Jie, Chuang, Yu-Chien, Chuang, Chi-Ning, Cheng, Yun-Hsin, Chang, Chuang-Rung, Leng, Chih-Hsiang, Wang, Ting-Fang

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 13.84 MB

english, 2016

19

A novel role for the histone acetyltransferase Hat1 in the CENP-A/CID assembly pathway in Drosophila melanogaster

Boltengagen, Mark, Huang, Anming, Boltengagen, Anastasiya, Trixl, Lukas, Lindner, Herbert, Kremser, Leopold, Offterdinger, Martin, Lusser, Alexandra

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 5.75 MB

english, 2016

20

Reversible acetylation on Lys501 regulates the activity of RNase II

Song, Limin, Wang, Guangyuan, Malhotra, Arun, Deutscher, Murray P., Liang, Wenxing

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

21

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome

Ji, Xinjun, Park, Juw Won, Bahrami-Samani, Emad, Lin, Lan, Duncan-Lewis, Christopher, Pherribo, Gordon, Xing, Yi, Liebhaber, Stephen A.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.22 MB

english, 2016

22

The quorum-sensing regulator ComA from Bacillus subtilis activates transcription using topologically distinct DNA motifs

Wolf, Diana, Rippa, Valentina, Mobarec, Juan Carlos, Sauer, Patricia, Adlung, Lorenz, Kolb, Peter, Bischofs, Ilka B.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.22 MB

english, 2016

23

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage

Josephs, Eric A., Kocak, D. Dewran, Fitzgibbon, Christopher J., McMenemy, Joshua, Gersbach, Charles A., Marszalek, Piotr E.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 33 KB

english, 2016

24

Subscriptions

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 66 KB

english, 2016

25

Nucleic Acids Research

Journal:

Nucleic Acids Research

Year:

2016

File:

PDF, 3.01 MB

2016

26

The structure and intermolecular forces of DNA condensates

Yoo, Jejoong, Aksimentiev, Aleksei

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 8.40 MB

english, 2016

27

Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model

Glas, Julia, Dümcke, Sebastian, Zacher, Benedikt, Poron, Don, Gagneur, Julien, Tresch, Achim

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.26 MB

english, 2016

28

Nucleic Acids Research: Editorial Board

Journal:

Nucleic Acids Research

Year:

2016

File:

PDF, 1.62 MB

2016

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