Volume 45; Issue 11

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Nucleic Acids Research
Volume 45; Issue 11

Nucleic Acids Research

Volume 45; Issue 11

1

Statistical analysis of genetic interactions in Tn-Seq data

DeJesus, Michael A., Nambi, Subhalaxmi, Smith, Clare M., Baker, Richard E., Sassetti, Christopher M., Ioerger, Thomas R.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.98 MB

english, 2017

2

Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq

Afik, Shaked, Bartok, Osnat, Artyomov, Maxim N., Shishkin, Alexander A., Kadri, Sabah, Hanan, Mor, Zhu, Xiaopeng, Garber, Manuel, Kadener, Sebastian

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.48 MB

english, 2017

3

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins

Sharan, Malvika, Förstner, Konrad U., Eulalio, Ana, Vogel, Jörg

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.15 MB

english, 2017

4

A platform for functional assessment of large variant libraries in mammalian cells

Matreyek, Kenneth A., Stephany, Jason J., Fowler, Douglas M.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.56 MB

english, 2017

5

Modeling bias and variation in the stochastic processes of small RNA sequencing

Argyropoulos, Christos, Etheridge, Alton, Sakhanenko, Nikita, Galas, David

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 5.58 MB

english, 2017

6

Molecular basis for the methylation specificity of ATXR5 for histone H3

Bergamin, Elisa, Sarvan, Sabina, Malette, Josée, Eram, Mohammad S., Yeung, Sylvain, Mongeon, Vanessa, Joshi, Monika, Brunzelle, Joseph S., Michaels, Scott D., Blais, Alexandre, Vedadi, Masoud, Couture

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.92 MB

english, 2017

7

An RRM–ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion

Collins, Katherine M., Kainov, Yaroslav A., Christodolou, Evangelos, Ray, Debashish, Morris, Quaid, Hughes, Timothy, Taylor, Ian A., Makeyev, Eugene V., Ramos, Andres

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 5.15 MB

english, 2017

8

Identification and dynamic changes of RNAs isolated from RALY-containing ribonucleoprotein complexes

Rossi, Annalisa, Moro, Albertomaria, Tebaldi, Toma, Cornella, Nicola, Gasperini, Lisa, Lunelli, Lorenzo, Quattrone, Alessandro, Viero, Gabriella, Macchi, Paolo

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 6.91 MB

english, 2017

9

Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins

Sztuba-Solinska, Joanna, Rausch, Jason W., Smith, Rodman, Miller, Jennifer T., Whitby, Denise, Le Grice, Stuart F.J.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.42 MB

english, 2017

10

SeqA structures behind Escherichia coli replication forks affect replication elongation and restart mechanisms

Pedersen, Ida Benedikte, Helgesen, Emily, Flåtten, Ingvild, Fossum-Raunehaug, Solveig, Skarstad, Kirsten

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.59 MB

english, 2017

11

A new promoter element associated with daily time keeping in Drosophila

Sharp, Brandi, Paquet, Eric, Naef, Felix, Bafna, Akanksha, Wijnen, Herman

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.06 MB

english, 2017

12

Integrative analysis identifies targetable CREB1/FoxA1 transcriptional co-regulation as a predictor of prostate cancer recurrence

Sunkel, Benjamin, Wu, Dayong, Chen, Zhong, Wang, Chiou-Miin, Liu, Xiangtao, Ye, Zhenqing, Horning, Aaron M., Liu, Joseph, Mahalingam, Devalingam, Lopez-Nicora, Horacio, Lin, Chun-Lin, Goodfellow, Paul

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 40 KB

english, 2017

13

Capturing a mammalian DNA polymerase extending from an oxidized nucleotide

Whitaker, Amy M., Smith, Mallory R., Schaich, Matthew A., Freudenthal, Bret D.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.03 MB

english, 2017

14

Transposition of Mutator–like transposable elements (MULEs) resembles hAT and Transib elements and V(D)J recombination

Liu, Kun, Wessler, Susan R.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.62 MB

english, 2017

15

A new model for ancient DNA decay based on paleogenomic meta-analysis

Kistler, Logan, Ware, Roselyn, Smith, Oliver, Collins, Matthew, Allaby, Robin G.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.26 MB

english, 2017

16

Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis

Wang, Jian, Mao, Kangkun, Zhao, Yunjie, Zeng, Chen, Xiang, Jianjin, Zhang, Yi, Xiao, Yi

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.16 MB

english, 2017

17

Interstrand cross-links arising from strand breaks at true abasic sites in duplex DNA

Yang, Zhiyu, Price, Nathan E., Johnson, Kevin M., Wang, Yinsheng, Gates, Kent S.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

18

Krüppel-like factors compete for promoters and enhancers to fine-tune transcription

Ilsley, Melissa D., Gillinder, Kevin R., Magor, Graham W., Huang, Stephen, Bailey, Timothy L., Crossley, Merlin, Perkins, Andrew C.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.15 MB

english, 2017

19

Mass spectrometry for serine ADP-ribosylation? Think o-glycosylation!

Bonfiglio, Juan J., Colby, Thomas, Matic, Ivan

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 517 KB

english, 2017

20

Mechanism of bacterial gene rearrangement: SprA-catalyzed precise DNA recombination and its directionality control by SprB ensure the gene rearrangement and stable expression of spsM during sporulation in Bacillus subtilis

Abe, Kimihiro, Takamatsu, Takuo, Sato, Tsutomu

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.20 MB

english, 2017

21

Flexible CRISPR library construction using parallel oligonucleotide retrieval

Read, Abigail, Gao, Shaojian, Batchelor, Eric, Luo, Ji

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.98 MB

english, 2017

22

NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types

Lee, Sejoon, Lee, Soohyun, Ouellette, Scott, Park, Woong-Yang, Lee, Eunjung A., Park, Peter J.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 740 KB

english, 2017

23

Orientation-dependent FRET system reveals differences in structures and flexibilities of nicked and gapped DNA duplexes

Kashida, Hiromu, Kurihara, Ayako, Kawai, Hayato, Asanuma, Hiroyuki

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.89 MB

english, 2017