Volume 45; Issue 19

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Nucleic Acids Research
Volume 45; Issue 19

Nucleic Acids Research

Volume 45; Issue 19

1

Impact of enhanced metabolic stability on pharmacokinetics and pharmacodynamics of GalNAc–siRNA conjugates

Nair, Jayaprakash K., Attarwala, Husain, Sehgal, Alfica, Wang, Qianfan, Aluri, Krishna, Zhang, Xuemei, Gao, Minggeng, Liu, Ju, Indrakanti, Ramesh, Schofield, Sally, Kretschmer, Philip, Brown, Christop

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.96 MB

english, 2017

2

HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions

Wang, Xiao-Tao, Cui, Wang, Peng, Cheng

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.59 MB

english, 2017

3

RUNX2 expression in thyroid and breast cancer requires the cooperation of three non-redundant enhancers under the control of BRD4 and c-JUN

Sancisi, Valentina, Manzotti, Gloria, Gugnoni, Mila, Rossi, Teresa, Gandolfi, Greta, Gobbi, Giulia, Torricelli, Federica, Catellani, Francesca, Faria do Valle, Italo, Remondini, Daniel, Castellani, Ga

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 5.76 MB

english, 2017

4

Activator Protein-1: redox switch controlling structure and DNA-binding

Yin, Zhou, Machius, Mischa, Nestler, Eric J., Rudenko, Gabby

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.79 MB

english, 2017

5

Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities

Bunina, Daria, Štefl, Martin, Huber, Florian, Khmelinskii, Anton, Meurer, Matthias, Barry, Joseph D., Kats, Ilia, Kirrmaier, Daniel, Huber, Wolfgang, Knop, Michael

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.46 MB

english, 2017

6

Insights into interplay between rexinoid signaling and myogenic regulatory factor-associated chromatin state in myogenic differentiation

Hamed, Munerah, Khilji, Saadia, Dixon, Katherine, Blais, Alexandre, Ioshikhes, Ilya, Chen, Jihong, Li, Qiao

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.84 MB

english, 2017

7

In vitro transcription–translation using bacterial genome as a template to reconstitute intracellular profile

Fujiwara, Kei, Sawamura, Tsunehito, Niwa, Tatsuya, Deyama, Tatsuki, Nomura, Shin-ichiro M., Taguchi, Hideki, Doi, Nobuhide

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

8

Naturally existing isoforms of miR-222 have distinct functions

Yu, Feng, Pillman, Katherine A., Neilsen, Corine T., Toubia, John, Lawrence, David M., Tsykin, Anna, Gantier, Michael P., Callen, David F., Goodall, Gregory J., Bracken, Cameron P.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 11.04 MB

english, 2017

9

Cmr1 enables efficient RNA and DNA interference of a III-B CRISPR–Cas system by binding to target RNA and crRNA

Li, Yingjun, Zhang, Yan, Lin, Jinzhong, Pan, Saifu, Han, Wenyuan, Peng, Nan, Liang, Yun Xiang, She, Qunxin

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.69 MB

english, 2017

10

A novel TPR–BEN domain interaction mediates PICH–BEND3 association

Pitchai, Ganesha P., Kaulich, Manuel, Bizard, Anna H., Mesa, Pablo, Yao, Qi, Sarlos, Kata, Streicher, Werner W., Nigg, Erich A., Montoya, Guillermo, Hickson, Ian D.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 9.25 MB

english, 2017

11

Initiating ribosomes and a 5′/3′-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation

Braun, Frédérique, Durand, Sylvain, Condon, Ciarán

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.90 MB

english, 2017

12

Regulation of mitotic recombination between DNA repeats in centromeres

Zafar, Faria, Okita, Akiko K, Onaka, Atsushi T, Su, Jie, Katahira, Yasuhiro, Nakayama, Jun-ichi, Takahashi, Tatsuro S, Masukata, Hisao, Nakagawa, Takuro

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

13

Programming sites of meiotic crossovers using Spo11 fusion proteins

Sarno, Roberta, Vicq, Yoan, Uematsu, Norio, Luka, Marine, Lapierre, Clement, Carroll, Dana, Bastianelli, Giacomo, Serero, Alexandre, Nicolas, Alain

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 6.00 MB

english, 2017

14

Embraced by eIF3: structural and functional insights into the roles of eIF3 across the translation cycle

Valášek, Leoš Shivaya, Zeman, Jakub, Wagner, Susan, Beznosková, Petra, Pavlíková, Zuzana, Mohammad, Mahabub Pasha, Hronová, Vladislava, Herrmannová, Anna, Hashem, Yaser, Gunišová, Stanislava

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.11 MB

english, 2017

15

Altering the speed of a DNA packaging motor from bacteriophage T4

Lin, Siying, Alam, Tanfis I., Kottadiel, Vishal I., VanGessel, Carl J., Tang, Wei-Chun, Chemla, Yann R., Rao, Venigalla B.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.75 MB

english, 2017

16

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

Heller, David, Krestel, Ralf, Ohler, Uwe, Vingron, Martin, Marsico, Annalisa

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.08 MB

english, 2017

17

Developmentally regulated higher-order chromatin interactions orchestrate B cell fate commitment

Boya, Ravi, Yadavalli, Anurupa Devi, Nikhat, Sameena, Kurukuti, Sreenivasulu, Palakodeti, Dasaradhi, Pongubala, Jagan M. R.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 8.71 MB

english, 2017

18

The RNA chaperone La promotes pre-tRNA maturation via indiscriminate binding of both native and misfolded targets

Vakiloroayaei, Ana, Shah, Neha S., Oeffinger, Marlene, Bayfield, Mark A.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.48 MB

english, 2017

19

Abasic and oxidized ribonucleotides embedded in DNA are processed by human APE1 and not by RNase H2

Malfatti, Matilde Clarissa, Balachander, Sathya, Antoniali, Giulia, Koh, Kyung Duk, Saint-Pierre, Christine, Gasparutto, Didier, Chon, Hyongi, Crouch, Robert J., Storici, Francesca, Tell, Gianluca

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 2.91 MB

english, 2017

20

Transcription–translation coupling: direct interactions of RNA polymerase with ribosomes and ribosomal subunits

Fan, Haitian, Conn, Adam B., Williams, Preston B., Diggs, Stephen, Hahm, Joseph, Gamper, Howard B., Hou, Ya-Ming, O’Leary, Seán E., Wang, Yinsheng, Blaha, Gregor M.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.72 MB

english, 2017

21

Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli

Sarkar, Paramita, Switzer, Amy, Peters, Christine, Pogliano, Joe, Wigneshweraraj, Sivaramesh

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.08 MB

english, 2017

22

Occurrence and stability of lone pair–π stacking interactions between ribose and nucleobases in functional RNAs

Chawla, Mohit, Chermak, Edrisse, Zhang, Qingyun, Bujnicki, Janusz M., Oliva, Romina, Cavallo, Luigi

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.99 MB

english, 2017

23

Short inverted repeats contribute to localized mutability in human somatic cells

Zou, Xueqing, Morganella, Sandro, Glodzik, Dominik, Davies, Helen, Li, Yilin, Stratton, Michael R., Nik-Zainal, Serena

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 506 KB

english, 2017

24

Separation and assembly of deep sequencing data into discrete sub-population genomes

Karagiannis, Konstantinos, Simonyan, Vahan, Chumakov, Konstantin, Mazumder, Raja

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.55 MB

english, 2017

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