Volume 6; Issue 1

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Plant Methods
Volume 6; Issue 1

Plant Methods

Volume 6; Issue 1

1

Protocol: a rapid and economical procedure for purification of plasmid or plant DNA with diverse applications in plant biology

Jian-Feng Li, Li Li, Jen Sheen

Journal:

Year:

2010

Language:

english

File:

PDF, 743 KB

english, 2010

2

SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea

Nanette Coetzer, Inge Gazendam, Dean Oelofse, Dave K Berger

Journal:

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

3

Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato

Martiniano M Ricardi, Rodrigo M González, Norberto D Iusem

Journal:

Year:

2010

Language:

english

File:

PDF, 2.03 MB

english, 2010

4

Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species

Naoki Hirotsu, Naomi Murakami, Takayuki Kashiwagi, Kazuhiro Ujiie, Ken Ishimaru

Journal:

Year:

2010

Language:

english

File:

PDF, 1.29 MB

english, 2010

5

Functional mapping of genotype-environment interactions for soybean growth by a semiparametric approach

Qin Li, Zhongwen Huang, Meng Xu, Chenguang Wang, Junyi Gai, Youjun Huang, Xiaoming Pang, Rongling Wu

Journal:

Year:

2010

Language:

english

File:

PDF, 963 KB

english, 2010

6

Rapid metabolic profiling ofNicotiana tabacumdefence responses againstPhytophthora nicotianaeusing direct infrared laser desorption ionization mass spectrometry and principal component analysis

Alfredo J Ibáñez, Judith Scharte, Philipp Bones, Alexander Pirkl, Stefan Meldau, Ian T Baldwin, Franz Hillenkamp, Engelbert Weis, Klaus Dreisewerd

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

7

UCE: A uracil excision (USER™)-based toolbox for transformation of cereals

Kim H Hebelstrup, Michael W Christiansen, Massimiliano Carciofi, Birgitte Tauris, Henrik Brinch-Pedersen, Preben B Holm

Journal:

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

8

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping inEucalyptus

Carolina P Sansaloni, César D Petroli, Jason Carling, Corey J Hudson, Dorothy A Steane, Alexander A Myburg, Dario Grattapaglia, René E Vaillancourt, Andrzej Kilian

Journal:

Year:

2010

Language:

english

File:

PDF, 621 KB

english, 2010

9

High-contrast three-dimensional imaging of the Arabidopsis leaf enables the analysis of cell dimensions in the epidermis and mesophyll

Nathalie Wuyts, Jean-Christophe Palauqui, Geneviève Conejero, Jean-Luc Verdeil, Christine Granier, Catherine Massonnet

Journal:

Year:

2010

Language:

english

File:

PDF, 2.88 MB

english, 2010

10

High throughput generation of promoter reporter (GFP) transgenic lines of low expressing genes in Arabidopsis and analysis of their expression patterns

Yong-Li Xiao, Julia C Redman, Erin L Monaghan, Jun Zhuang, Beverly A Underwood, William A Moskal, Wei Wang, Hank C Wu, Christopher D Town

Journal:

Year:

2010

Language:

english

File:

PDF, 1.98 MB

english, 2010

11

Targeted identification of genomic regions using TAGdb

Daniel J Marshall, Alice Hayward, Dominic Eales, Michael Imelfort, Jiri Stiller, Paul J Berkman, Terry Clark, Megan McKenzie, Kaitao Lai, Chris Duran, Jacqueline Batley, David Edwards

Journal:

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

12

High frequency, cell type-specific visualization of fluorescent-tagged genomic sites in interphase and mitotic cells of livingArabidopsisplants

Antonius JM Matzke, Koichi Watanabe, Johannes van der Winden, Ulf Naumann, Marjori Matzke

Journal:

Year:

2010

Language:

english

File:

PDF, 1.90 MB

english, 2010

13

Isolation of intact sub-dermal secretory cavities fromEucalyptus

Jason QD Goodger, Allison M Heskes, Madeline C Mitchell, Drew J King, Elizabeth H Neilson, Ian E Woodrow

Journal:

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

14

A high-throughput method for isolation of salicylic acid metabolic mutants

George Marek, Ryan Carver, Yezhang Ding, Deepak Sathyanarayan, Xudong Zhang, Zhonglin Mou

Journal:

Year:

2010

Language:

english

File:

PDF, 1.46 MB

english, 2010

15

Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

Robin A Atherton, Bennet J McComish, Lara D Shepherd, Lorraine A Berry, Nick W Albert, Peter J Lockhart

Journal:

Year:

2010

Language:

english

File:

PDF, 526 KB

english, 2010

16

TheRg1allele as a valuable tool for genetic transformation of the tomato 'Micro-Tom' model system

Lilian E Pino, Simone Lombardi-Crestana, Mariana S Azevedo, Danielle C Scotton, Lucélia Borgo, Vera Quecini, Antonio Figueira, Lázaro EP Peres

Journal:

Year:

2010

Language:

english

File:

PDF, 3.85 MB

english, 2010

17

A simple, rapid method to isolate salt glands for three-dimensional visualization, fluorescence imaging and cytological studies

Wee-Kee Tan, Tit-Meng Lim, Chiang-Shiong Loh

Journal:

Year:

2010

Language:

english

File:

PDF, 3.60 MB

english, 2010

18

DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNAin vitro

Luise H Brand, Tobias Kirchler, Sabine Hummel, Christina Chaban, Dierk Wanke

Journal:

Year:

2010

Language:

english

File:

PDF, 1.27 MB

english, 2010

19

Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and inBrachypodium distachyonand oat

Andrzej Pacak, Katrin Geisler, Bodil Jørgensen, Maria Barciszewska-Pacak, Lena Nilsson, Tom Hamborg Nielsen, Elisabeth Johansen, Mette Grønlund, Iver Jakobsen, Merete Albrechtsen

Journal:

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

20

pH-sensitivity of YFP provides an intracellular indicator of programmed cell death

Bennett Young, Raymond Wightman, Robert Blanvillain, Sydney B Purcel, Patrick Gallois

Journal:

Year:

2010

Language:

english

File:

PDF, 723 KB

english, 2010

21

Protocol: using virus-induced gene silencing to study the arbuscular mycorrhizal symbiosis inPisum sativum

Mette Grønlund, Anne Olsen, Elisabeth I Johansen, Iver Jakobsen

Journal:

Year:

2010

Language:

english

File:

PDF, 483 KB

english, 2010

22

Normalization using ploidy and genomic DNA copy number allows absolute quantification of transcripts, proteins and metabolites in cells

Hiroshi Shimada, Takeshi Obayashi, Naoki Takahashi, Minami Matsui, Atsushi Sakamoto

Journal:

Year:

2010

Language:

english

File:

PDF, 678 KB

english, 2010

23

NEATTILL: A simplified procedure for nucleic acid extraction from arrayed tissue for TILLING and other high-throughput reverse genetic applications

Yellamaraju Sreelakshmi, Soni Gupta, Reddaiah Bodanapu, Vineeta Singh Chauhan, Mickey Hanjabam, Sherinmol Thomas, Vijee Mohan, Sulabha Sharma, Rajeswari Srinivasan, Rameshwar Sharma

Journal:

Year:

2010

Language:

english

File:

PDF, 2.83 MB

english, 2010

24

Documentation system for plant transformation service and research

Karin I Köhl, Jürgen Gremmels

Journal:

Year:

2010

Language:

english

File:

PDF, 1.73 MB

english, 2010

25

A rapid and robust assay for detection of S-phase cell cycle progression in plant cells and tissues by using ethynyl deoxyuridine

Edit Kotogány, Dénes Dudits, Gábor V Horváth, Ferhan Ayaydin

Journal:

Year:

2010

Language:

english

File:

PDF, 5.35 MB

english, 2010

26

Proposal for field sampling of plants and processing in the lab for environmental metabolic fingerprinting

Tanja S Maier, Jürgen Kuhn, Caroline Müller

Journal:

Year:

2010

Language:

english

File:

PDF, 1.13 MB

english, 2010

27

Dealing with the problem of non-specificin situmRNA hybridization signals associated with plant tissues undergoing programmed cell death

Jaana Vuosku, Suvi Sutela, Mira Sääskilahti, Johanna Kestilä, Anne Jokela, Tytti Sarjala, Hely Häggman

Journal:

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

28

Rapid expression of transgenes driven by seed-specific constructs in leaf tissue: DHA production

James R Petrie, Pushkar Shrestha, Qing Liu, Maged P Mansour, Craig C Wood, Xue-Rong Zhou, Peter D Nichols, Allan G Green, Surinder P Singh

Journal:

Year:

2010

Language:

english

File:

PDF, 630 KB

english, 2010

29

Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with theArabidopsisATH1 microarray

Tara J Holman, Michael H Wilson, Kim Kenobi, Ian L Dryden, Charlie T Hodgman, Andrew TA Wood, Michael J Holdsworth

Journal:

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010