Volume 7; Issue 1

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Plant Methods
Volume 7; Issue 1

Plant Methods

Volume 7; Issue 1

1

Delivering high-resolution landmarks using inkjet micropatterning for spatial monitoring of leaf expansion

Lisheng Wang, Simon T Beyer, Quentin CB Cronk, Konrad Walus

Journal:

Year:

2011

Language:

english

File:

PDF, 3.13 MB

english, 2011

2

De novoassembly of potential linear artificial chromosome constructs capped with expansive telomeric repeats

Li Lin, Dal-Hoe Koo, Wenli Zhang, Joseph St Peter, Jiming Jiang

Journal:

Year:

2011

Language:

english

File:

PDF, 1.65 MB

english, 2011

3

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

Jose M Muiño, Kerstin Kaufmann, Roeland CHJ van Ham, Gerco C Angenent, Pawel Krajewski

Journal:

Year:

2011

Language:

english

File:

PDF, 445 KB

english, 2011

4

Agrobacterium-mediated transformation of safflower and the efficient recovery of transgenic plants via grafting

Srinivas Belide, Luch Hac, Surinder P Singh, Allan G Green, Craig C Wood

Journal:

Year:

2011

Language:

english

File:

PDF, 4.80 MB

english, 2011

5

A high-resolution method for the localization of proanthocyanidins in plant tissues

Shamila W Abeynayake, Stephen Panter, Aidyn Mouradov, German Spangenberg

Journal:

Year:

2011

Language:

english

File:

PDF, 2.81 MB

english, 2011

6

A rapid, simple method for the genetic discrimination of intactArabidopsis thalianamutant seeds using metabolic profiling by direct analysis in real-time mass spectrometry

Suk Weon Kim, Hye Jin Kim, Jong Hyun Kim, Yong Kook Kwon, Myung Suk Ahn, Young Pyo Jang, Jang R Liu

Journal:

Year:

2011

Language:

english

File:

PDF, 784 KB

english, 2011

7

Efficient virus-induced gene silencing in apple, pear and Japanese pear usingApple latent spherical virusvectors

Shintarou Sasaki, Noriko Yamagishi, Nobuyuki Yoshikawa

Journal:

Year:

2011

Language:

english

File:

PDF, 3.73 MB

english, 2011

8

An effective virus-based gene silencing method for functional genomics studies in common bean

Claudia Díaz-Camino, Padmanaban Annamalai, Federico Sanchez, Aardra Kachroo, Said A Ghabrial

Journal:

Year:

2011

Language:

english

File:

PDF, 3.46 MB

english, 2011

9

Protocol: An updated integrated methodology for analysis of metabolites and enzyme activities of ethylene biosynthesis

Inge Bulens, Bram Van de Poel, Maarten LATM Hertog, Maurice P De Proft, Annemie H Geeraerd, Bart M Nicolaï

Journal:

Year:

2011

Language:

english

File:

PDF, 567 KB

english, 2011

10

Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research

Rogério F Carvalho, Marcelo L Campos, Lilian E Pino, Simone L Crestana, Agustin Zsögön, Joni E Lima, Vagner A Benedito, Lázaro EP Peres

Journal:

Year:

2011

Language:

english

File:

PDF, 18.76 MB

english, 2011

11

A novel procedure for the quantitative analysis of metabolites, storage products and transcripts of laser microdissected seed tissues ofBrassica napus

Silke Schiebold, Henning Tschiersch, Ljudmilla Borisjuk, Nicolas Heinzel, Ruslana Radchuk, Hardy Rolletschek

Journal:

Year:

2011

Language:

english

File:

PDF, 3.28 MB

english, 2011

12

Accurate inference of shoot biomass from high-throughput images of cereal plants

Mahmood R Golzarian, Ross A Frick, Karthika Rajendran, Bettina Berger, Stuart Roy, Mark Tester, Desmond S Lun

Journal:

Year:

2011

Language:

english

File:

PDF, 3.17 MB

english, 2011

13

Visualization of plant viral suppressor silencing activity in intact leaf lamina by quantitative fluorescent imaging

Dirk Stephan, Coba Slabber, Gavin George, Victor Ninov, Kevin P Francis, Johan T Burger

Journal:

Year:

2011

Language:

english

File:

PDF, 5.78 MB

english, 2011

14

Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy

Andreia M Smith-Moritz, Mawsheng Chern, Jeemeng Lao, Wing Hoi Sze-To, Joshua L Heazlewood, Pamela C Ronald, Miguel E Vega-Sánchez

Journal:

Year:

2011

Language:

english

File:

PDF, 357 KB

english, 2011

15

Variable-angle total internal reflection fluorescence microscopy of intact cells ofArabidopsis thaliana

Yinglang Wan, William M Ash, Lusheng Fan, Huaiqin Hao, Myung K Kim, Jinxing Lin

Journal:

Year:

2011

Language:

english

File:

PDF, 459 KB

english, 2011

16

Classification of images of wheat, ryegrass and brome grass species at early growth stages using principal component analysis

Mahmood R Golzarian, Ross A Frick

Journal:

Year:

2011

Language:

english

File:

PDF, 447 KB

english, 2011

17

Rapid analysis of seed size inArabidopsisfor mutant and QTL discovery

Rowan P Herridge, Robert C Day, Samantha Baldwin, Richard C Macknight

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

18

A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes

Yang Zhang, Jianbin Su, Shan Duan, Ying Ao, Jinran Dai, Jun Liu, Peng Wang, Yuge Li, Bing Liu, Dongru Feng, Jinfa Wang, Hongbin Wang

Journal:

Year:

2011

Language:

english

File:

PDF, 969 KB

english, 2011

19

Maize microarray annotation database

Nanette Coetzer, Alexander A Myburg, Dave K Berger

Journal:

Year:

2011

Language:

english

File:

PDF, 242 KB

english, 2011

20

Arabidopsisseedling flood-inoculation technique: a rapid and reliable assay for studying plant-bacterial interactions

Yasuhiro Ishiga, Takako Ishiga, Srinivasa R Uppalapati, Kirankumar S Mysore

Journal:

Year:

2011

Language:

english

File:

PDF, 946 KB

english, 2011

21

A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange

Xue Shi, Haiyang Zeng, Yadong Xue, Meizhong Luo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

22

A simple and efficient micrografting method for stably transformedNicotiana attenuataplants to examine shoot-root signaling

Variluska Fragoso, Hannah Goddard, Ian T Baldwin, Sang-Gyu Kim

Journal:

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

23

Protocol: methodology for chromatin immunoprecipitation (ChIP) inChlamydomonas reinhardtii

Daniela Strenkert, Stefan Schmollinger, Michael Schroda

Journal:

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

24

Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry

Maren Müller, Sergi Munné-Bosch

Journal:

Year:

2011

Language:

english

File:

PDF, 324 KB

english, 2011

25

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

Tongwu Zhang, Xiaowei Zhang, Songnian Hu, Jun Yu

Journal:

Year:

2011

Language:

english

File:

PDF, 502 KB

english, 2011

26

Universal endogenous gene controls for bisulphite conversion in analysis of plant DNA methylation

Jing Wang, Chongnan Wang, Yan Long, Clare Hopkins, Smita Kurup, Kede Liu, Graham J King, Jinling Meng

Journal:

Year:

2011

Language:

english

File:

PDF, 438 KB

english, 2011

27

Simulation of future global warming scenarios in rice paddies with an open-field warming facility

Muhammad Ishaq Asif Rehmani, Jingqi Zhang, Ganghua Li, Syed Tahir Ata-Ul-Karim, Shaohua Wang, Bruce A Kimball, Chuan Yan, Zhenghui Liu, Yanfeng Ding

Journal:

Year:

2011

Language:

english

File:

PDF, 3.10 MB

english, 2011

28

A novel Gateway®-compatible binary vector allows direct selection of recombinant clones inAgrobacterium tumefaciens

Sy Mamadou Traore, Bingyu Zhao

Journal:

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

29

High Resolution Melt (HRM) analysis is an efficient tool to genotype EMS mutants in complex crop genomes

Seosamh Ó Lochlainn, Stephen Amoah, Neil S Graham, Khalid Alamer, Juan J Rios, Smita Kurup, Andrew Stoute, John P Hammond, Lars Østergaard, Graham J King, Phillip J White, Martin R Broadley

Journal:

Year:

2011

Language:

english

File:

PDF, 407 KB

english, 2011

30

A novel machine-vision-based facility for the automatic evaluation of yield-related traits in rice

Lingfeng Duan, Wanneng Yang, Chenglong Huang, Qian Liu

Journal:

Year:

2011

Language:

english

File:

PDF, 923 KB

english, 2011

31

Anin vivoroot hair assay for determining rates of apoptotic-like programmed cell death in plants

Bridget V Hogg, Joanna Kacprzyk, Elizabeth M Molony, Conor O’Reilly, Thomas F Gallagher, Patrick Gallois, Paul F McCabe

Journal:

Year:

2011

Language:

english

File:

PDF, 397 KB

english, 2011

32

Reproducible hairy root transformation and spot-inoculation methods to study root symbioses of pea

Scott R Clemow, Lindsey Clairmont, Lene H Madsen, Frédérique C Guinel

Journal:

Year:

2011

Language:

english

File:

PDF, 961 KB

english, 2011

33

Reverse protection assay: a tool to analyze transcriptional rates from individual promoters

Yan O Zubo, Victor V Kusnetsov, Thomas Börner, Karsten Liere

Journal:

Year:

2011

Language:

english

File:

PDF, 680 KB

english, 2011

34

An aeroponic culture system for the study of root herbivory onArabidopsis thaliana

Martha M Vaughan, Dorothea Tholl, James G Tokuhisa

Journal:

Year:

2011

Language:

english

File:

PDF, 2.45 MB

english, 2011

35

Development of expression vectors based on pepino mosaic virus

Raquel N Sempere, Pedro Gómez, Verónica Truniger, Miguel A Aranda

Journal:

Year:

2011

Language:

english

File:

PDF, 2.42 MB

english, 2011

36

Protocol: A simple phenol-based method for 96-well extraction of high quality RNA from Arabidopsis

Mathew S Box, Vincent Coustham, Caroline Dean, Joshua S Mylne

Journal:

Year:

2011

Language:

english

File:

PDF, 1.70 MB

english, 2011

37

Exploration of plant genomes in the FLAGdb++environment

Sandra Dèrozier, Franck Samson, Jean-Philippe Tamby, Cécile Guichard, Véronique Brunaud, Philippe Grevet, Séverine Gagnot, Philippe Label, Jean-Charles Leplé, Alain Lecharny, Sébastien Aubourg

Journal:

Year:

2011

Language:

english

File:

PDF, 1.70 MB

english, 2011

38

FTIR-ATR-based prediction and modelling of lignin and energy contents reveals independent intra-specific variation of these traits in bioenergy poplars

Guanwu Zhou, Gail Taylor, Andrea Polle

Journal:

Year:

2011

Language:

english

File:

PDF, 752 KB

english, 2011

39

sunTILL: a TILLING resource for gene function analysis in sunflower

Wilma Sabetta, Vittorio Alba, Antonio Blanco, Cinzia Montemurro

Journal:

Year:

2011

Language:

english

File:

PDF, 790 KB

english, 2011

40

Matrix-assisted laser desorption/ionisation mass spectrometry imaging and its development for plant protein imaging

Julia Grassl, Nicolas L Taylor, A Harvey Millar

Journal:

Year:

2011

Language:

english

File:

PDF, 1.35 MB

english, 2011

41

A rapid chemical method for lysingArabidopsiscells for protein analysis

Daisuke Tsugama, Shenkui Liu, Tetsuo Takano

Journal:

Year:

2011

Language:

english

File:

PDF, 3.23 MB

english, 2011

42

A novel method for prenylquinone profiling in plant tissues by ultra-high pressure liquid chromatography-mass spectrometry

Jacopo Martinis, Felix Kessler, Gaetan Glauser

Journal:

Year:

2011

Language:

english

File:

PDF, 494 KB

english, 2011

43

Reverse genetics in Chlamydomonas: a platform for isolating insertional mutants

David Gonzalez-Ballester, Wirulda Pootakham, Florence Mus, Wenqiang Yang, Claudia Catalanotti, Leonardo Magneschi, Amaury de Montaigu, Jose J Higuera, Matthew Prior, Aurora Galván, Emilio Fernandez, A

Journal:

Year:

2011

Language:

english

File:

PDF, 635 KB

english, 2011

44

A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants

Agnieszka Żmieńko, Magdalena Guzowska-Nowowiejska, Radosław Urbaniak, Wojciech Pląder, Piotr Formanowicz, Marek Figlerowicz

Journal:

Year:

2011

Language:

english

File:

PDF, 727 KB

english, 2011

45

Transformation and regeneration of the holoparasitic plantPhelipanche aegyptiaca

Mónica Fernández-Aparicio, Diego Rubiales, Pradeepa CG Bandaranayake, John I Yoder, James H Westwood

Journal:

Year:

2011

Language:

english

File:

PDF, 1.97 MB

english, 2011

46

Protocol: high throughput silica-based purification of RNA from Arabidopsis seedlings in a 96-well format

Eliane Salvo-Chirnside, Steven Kane, Lorraine E Kerr

Journal:

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

47

Comparative evaluation of extraction methods for apoplastic proteins from maize leaves

Katja Witzel, Muhammad Shahzad, Andrea Matros, Hans-Peter Mock, Karl H Mühling

Journal:

Year:

2011

Language:

english

File:

PDF, 1020 KB

english, 2011

48

An improved protocol for efficient transformation and regeneration of diverse indica rice cultivars

Khirod K Sahoo, Amit K Tripathi, Ashwani Pareek, Sudhir K Sopory, Sneh L Singla-Pareek

Journal:

Year:

2011

Language:

english

File:

PDF, 672 KB

english, 2011

49

A simple and efficient method for isolating small RNAs from different plant species

Flor de Fátima Rosas-Cárdenas, Noé Durán-Figueroa, Jean-Philippe Vielle-Calzada, Andrés Cruz-Hernández, Nayelli Marsch-Martínez, Stefan de Folter

Journal:

Year:

2011

Language:

english

File:

PDF, 793 KB

english, 2011

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