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Volume 10; Issue 6
Main
PLoS Computational Biology
Volume 10; Issue 6
PLoS Computational Biology
Volume 10; Issue 6
1
A Novel Cell Traction Force Microscopy to Study Multi-Cellular System
Tang, Xin
,
Tofangchi, Alireza
,
Anand, Sandeep V.
,
Saif, Taher A.
,
Hammer, Daniel A.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.84 MB
Your tags:
english, 2014
2
Integrating Diverse Datasets Improves Developmental Enhancer Prediction
Erwin, Genevieve D.
,
Oksenberg, Nir
,
Truty, Rebecca M.
,
Kostka, Dennis
,
Murphy, Karl K.
,
Ahituv, Nadav
,
Pollard, Katherine S.
,
Capra, John A.
,
Ohler, Uwe
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.80 MB
Your tags:
english, 2014
3
A New Online Computational Biology Curriculum
Searls, David B.
,
Ouellette, Francis
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 161 KB
Your tags:
english, 2014
4
AprioriGWAS, a New Pattern Mining Strategy for Detecting Genetic Variants Associated with Disease through Interaction Effects
Zhang, Qingrun
,
Long, Quan
,
Ott, Jurg
,
Rzhetsky, Andrey
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.12 MB
Your tags:
english, 2014
5
A Normative Theory of Forgetting: Lessons from the Fruit Fly
Brea, Johanni
,
Urbanczik, Robert
,
Senn, Walter
,
Daunizeau, Jean
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 301 KB
Your tags:
english, 2014
6
International Society for Computational Biology Honors Dana Pe'er with Top Bioinformatics/Computational Biology Award for 2014
Fogg, Christiana N.
,
Kovats, Diane E.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 275 KB
Your tags:
english, 2014
7
Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses
Töpfer, Nadine
,
Scossa, Federico
,
Fernie, Alisdair
,
Nikoloski, Zoran
,
Haugh, Jason M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 719 KB
Your tags:
english, 2014
8
Large-Scale Genomic Analysis Suggests a Neutral Punctuated Dynamics of Transposable Elements in Bacterial Genomes
Iranzo, Jaime
,
Gómez, Manuel J.
,
López de Saro, Francisco J.
,
Manrubia, Susanna
,
Bergstrom, Carl T.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 554 KB
Your tags:
english, 2014
9
Mechanistic, Mathematical Model to Predict the Dynamics of Tissue Genesis in Bone Defects via Mechanical Feedback and Mediation of Biochemical Factors
Moore, Shannon R.
,
Saidel, Gerald M.
,
Knothe, Ulf
,
Knothe Tate, Melissa L.
,
Hammer, Daniel A.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 3.67 MB
Your tags:
english, 2014
10
A Unifying Mechanistic Model of Selective Attention in Spiking Neurons
Bobier, Bruce
,
Stewart, Terrence C.
,
Eliasmith, Chris
,
Einhäuser, Wolfgang
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 683 KB
Your tags:
english, 2014
11
Correction: Impact of Different Oseltamivir Regimens on Treating Influenza A Virus Infection and Resistance Emergence: Insights from a Modelling Study
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 147 KB
Your tags:
english, 2014
12
An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes
Liu, Kevin J.
,
Dai, Jingxuan
,
Truong, Kathy
,
Song, Ying
,
Kohn, Michael H.
,
Nakhleh, Luay
,
Lengauer, Thomas
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.30 MB
Your tags:
english, 2014
13
Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference
Chen, Guocai
,
Cairelli, Michael J.
,
Kilicoglu, Halil
,
Shin, Dongwook
,
Rindflesch, Thomas C.
,
Rzhetsky, Andrey
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.55 MB
Your tags:
english, 2014
14
Identifying Crucial Parameter Correlations Maintaining Bursting Activity
Doloc-Mihu, Anca
,
Calabrese, Ronald L.
,
Graham, Lyle J.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.82 MB
Your tags:
english, 2014
15
Spatial Transmission of 2009 Pandemic Influenza in the US
Gog, Julia R.
,
Ballesteros, Sébastien
,
Viboud, Cécile
,
Simonsen, Lone
,
Bjornstad, Ottar N.
,
Shaman, Jeffrey
,
Chao, Dennis L.
,
Khan, Farid
,
Grenfell, Bryan T.
,
Ferguson, Neil M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.12 MB
Your tags:
english, 2014
16
Quantification of HTLV-1 Clonality and TCR Diversity
Laydon, Daniel J.
,
Melamed, Anat
,
Sim, Aaron
,
Gillet, Nicolas A.
,
Sim, Kathleen
,
Darko, Sam
,
Kroll, J. Simon
,
Douek, Daniel C.
,
Price, David A.
,
Bangham, Charles R. M.
,
Asquith, Becca
,
Peters, Bjoern
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 440 KB
Your tags:
english, 2014
17
A Computational Model of the Fetal Circulation to Quantify Blood Redistribution in Intrauterine Growth Restriction
Garcia-Canadilla, Patricia
,
Rudenick, Paula A.
,
Crispi, Fatima
,
Cruz-Lemini, Monica
,
Palau, Georgina
,
Camara, Oscar
,
Gratacos, Eduard
,
Bijens, Bart H.
,
Gefen, Amit
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.15 MB
Your tags:
english, 2014
18
A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis
Castro-González, Carlos
,
Luengo-Oroz, Miguel A.
,
Duloquin, Louise
,
Savy, Thierry
,
Rizzi, Barbara
,
Desnoulez, Sophie
,
Doursat, René
,
Kergosien, Yannick L.
,
Ledesma-Carbayo, María J.
,
Bourgine, Paul
,
Pe
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.95 MB
Your tags:
english, 2014
19
Genome-Wide Prediction and Validation of Peptides That Bind Human Prosurvival Bcl-2 Proteins
DeBartolo, Joe
,
Taipale, Mikko
,
Keating, Amy E.
,
Dunbrack, Roland L.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.05 MB
Your tags:
english, 2014
20
Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE)
Shem-Tov, Doron
,
Halperin, Eran
,
Keinan, Alon
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.54 MB
Your tags:
english, 2014
21
Yeast Mating and Image-Based Quantification of Spatial Pattern Formation
Diener, Christian
,
Schreiber, Gabriele
,
Giese, Wolfgang
,
del Rio, Gabriel
,
Schröder, Andreas
,
Klipp, Edda
,
Nielsen, Jens
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.33 MB
Your tags:
english, 2014
22
Place Cell Rate Remapping by CA3 Recurrent Collaterals
Solstad, Trygve
,
Yousif, Hosam N.
,
Sejnowski, Terrence J.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.07 MB
Your tags:
english, 2014
23
Unsupervised Learning of Cone Spectral Classes from Natural Images
Benson, Noah C.
,
Manning, Jeremy R.
,
Brainard, David H.
,
Bethge, Matthias
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 754 KB
Your tags:
english, 2014
24
Protein Conservation and Variation Suggest Mechanisms of Cell Type-Specific Modulation of Signaling Pathways
Schaefer, Martin H.
,
Yang, Jae-Seong
,
Serrano, Luis
,
Kiel, Christina
,
Asthagiri, Anand R.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.73 MB
Your tags:
english, 2014
25
The Self-Limiting Dynamics of TGF-β Signaling In Silico and In Vitro, with Negative Feedback through PPM1A Upregulation
Wang, Junjie
,
Tucker-Kellogg, Lisa
,
Ng, Inn Chuan
,
Jia, Ruirui
,
Thiagarajan, P. S.
,
White, Jacob K.
,
Yu, Hanry
,
Ouzounis, Christos A.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.69 MB
Your tags:
english, 2014
26
Behaviors and Strategies of Bacterial Navigation in Chemical and Nonchemical Gradients
Hu, Bo
,
Tu, Yuhai
,
Wingreen, Ned S.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 655 KB
Your tags:
english, 2014
27
CGBayesNets: Conditional Gaussian Bayesian Network Learning and Inference with Mixed Discrete and Continuous Data
McGeachie, Michael J.
,
Chang, Hsun-Hsien
,
Weiss, Scott T.
,
Murphy, Robert F.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 205 KB
Your tags:
english, 2014
28
Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome
Kuhn, Michael
,
Hyman, Anthony A.
,
Beyer, Andreas
,
Singh, Mona
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.36 MB
Your tags:
english, 2014
29
Ten Simple Rules for Approaching a New Job
Bourne, Philip E.
,
Lewitter, Fran
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 156 KB
Your tags:
english, 2014
30
An HIV Epidemic Model Based on Viral Load Dynamics: Value in Assessing Empirical Trends in HIV Virulence and Community Viral Load
Herbeck, Joshua T.
,
Mittler, John E.
,
Gottlieb, Geoffrey S.
,
Mullins, James I.
,
Ferguson, Neil M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.40 MB
Your tags:
english, 2014
31
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
Podlaha, Ondrej
,
De, Subhajyoti
,
Gonen, Mithat
,
Michor, Franziska
,
Morozov, Alexandre V.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.29 MB
Your tags:
english, 2014
32
Pierced Lasso Bundles Are a New Class of Knot-like Motifs
Haglund, Ellinor
,
Sulkowska, Joanna I.
,
Noel, Jeffrey K.
,
Lammert, Heiko
,
Onuchic, José N.
,
Jennings, Patricia A.
,
Punta, Marco
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.32 MB
Your tags:
english, 2014
33
Messages Do Diffuse Faster than Messengers: Reconciling Disparate Estimates of the Morphogen Bicoid Diffusion Coefficient
Sigaut, Lorena
,
Pearson, John E.
,
Colman-Lerner, Alejandro
,
Ponce Dawson, Silvina
,
Fradin, Cécile
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 493 KB
Your tags:
english, 2014
34
Negative Example Selection for Protein Function Prediction: The NoGO Database
Youngs, Noah
,
Penfold-Brown, Duncan
,
Bonneau, Richard
,
Shasha, Dennis
,
Radivojac, Predrag
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.05 MB
Your tags:
english, 2014
35
Optimal Sampling Strategies for Detecting Zoonotic Disease Epidemics
Ferguson, Jake M.
,
Langebrake, Jessica B.
,
Cannataro, Vincent L.
,
Garcia, Andres J.
,
Hamman, Elizabeth A.
,
Martcheva, Maia
,
Osenberg, Craig W.
,
Tanaka, Mark M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 625 KB
Your tags:
english, 2014
36
Comparison of REST Cistromes across Human Cell Types Reveals Common and Context-Specific Functions
Rockowitz, Shira
,
Lien, Wen-Hui
,
Pedrosa, Erika
,
Wei, Gang
,
Lin, Mingyan
,
Zhao, Keji
,
Lachman, Herbert M.
,
Fuchs, Elaine
,
Zheng, Deyou
,
Morozov, Alexandre V.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 3.80 MB
Your tags:
english, 2014
37
Computational Modeling of Allosteric Regulation in the Hsp90 Chaperones: A Statistical Ensemble Analysis of Protein Structure Networks and Allosteric Communications
Blacklock, Kristin
,
Verkhivker, Gennady M.
,
Briggs, James M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 5.07 MB
Your tags:
english, 2014
38
A Quantitative Comparison of Anti-HIV Gene Therapy Delivered to Hematopoietic Stem Cells versus CD4+ T Cells
Savkovic, Borislav
,
Nichols, James
,
Birkett, Donald
,
Applegate, Tanya
,
Ledger, Scott
,
Symonds, Geoff
,
Murray, John M.
,
Weinberger, Leor
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.15 MB
Your tags:
english, 2014
39
Optimal Reaction Coordinate as a Biomarker for the Dynamics of Recovery from Kidney Transplant
Krivov, Sergei V.
,
Fenton, Hayley
,
Goldsmith, Paul J.
,
Prasad, Rajendra K.
,
Fisher, Julie
,
Paci, Emanuele
,
Wang, Edwin
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 843 KB
Your tags:
english, 2014
40
Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization
Javaheri, Narjes
,
Dries, Roland
,
Kaandorp, Jaap
,
Curnow, Paul
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.74 MB
Your tags:
english, 2014
41
Limits of Feedback Control in Bacterial Chemotaxis
Dufour, Yann S.
,
Fu, Xiongfei
,
Hernandez-Nunez, Luis
,
Emonet, Thierry
,
Haugh, Jason M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1015 KB
Your tags:
english, 2014
42
Optimizing Metabolite Production Using Periodic Oscillations
Sowa, Steven W.
,
Baldea, Michael
,
Contreras, Lydia M.
,
Shvartsman, Stanislav
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.44 MB
Your tags:
english, 2014
43
Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases
Barshir, Ruth
,
Shwartz, Omer
,
Smoly, Ilan Y.
,
Yeger-Lotem, Esti
,
Noble, William Stafford
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.74 MB
Your tags:
english, 2014
44
The Effects of Theta Precession on Spatial Learning and Simplicial Complex Dynamics in a Topological Model of the Hippocampal Spatial Map
Arai, Mamiko
,
Brandt, Vicky
,
Dabaghian, Yuri
,
Ermentrout, Bard
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 647 KB
Your tags:
english, 2014
45
Correction: Collective Cell Motion in an Epithelial Sheet Can be Quantitatively Described by a Stochastic Interacting Particle Model
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 147 KB
Your tags:
english, 2014
46
Model Selection in Systems Biology Depends on Experimental Design
Silk, Daniel
,
Kirk, Paul D. W.
,
Barnes, Chris P.
,
Toni, Tina
,
Stumpf, Michael P. H.
,
Rost, Burkhard
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.47 MB
Your tags:
english, 2014
47
An Expanded Notch-Delta Model Exhibiting Long-Range Patterning and Incorporating MicroRNA Regulation
Chen, Jerry S.
,
Gumbayan, Abygail M.
,
Zeller, Robert W.
,
Mahaffy, Joseph M.
,
Nie, Qing
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.02 MB
Your tags:
english, 2014
48
On the Origins of Suboptimality in Human Probabilistic Inference
Acerbi, Luigi
,
Vijayakumar, Sethu
,
Wolpert, Daniel M.
,
Beck, Jeff
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 2.02 MB
Your tags:
english, 2014
49
A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks
Gupta, Ankit
,
Briat, Corentin
,
Khammash, Mustafa
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 1.17 MB
Your tags:
english, 2014
50
Interplay between Chaperones and Protein Disorder Promotes the Evolution of Protein Networks
Pechmann, Sebastian
,
Frydman, Judith
,
Iakoucheva, Lilia M.
Journal:
PLoS Computational Biology
Year:
2014
Language:
english
File:
PDF, 920 KB
Your tags:
english, 2014
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