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Volume 11; Issue 12
Main
PLoS Computational Biology
Volume 11; Issue 12
PLoS Computational Biology
Volume 11; Issue 12
1
Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer
Ruffalo, Matthew
,
Koyutürk, Mehmet
,
Sharan, Roded
,
Zhou, Xianghong Jasmine
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.46 MB
Your tags:
english, 2015
2
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family
Parra, R. Gonzalo
,
Espada, Rocío
,
Verstraete, Nina
,
Ferreiro, Diego U.
,
Orengo, Christine A.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.25 MB
Your tags:
english, 2015
3
Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson’s Disease
Pavlides, Alex
,
Hogan, S. John
,
Bogacz, Rafal
,
Graham, Lyle J.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.64 MB
Your tags:
english, 2015
4
Computational Identification of Mechanistic Factors That Determine the Timing and Intensity of the Inflammatory Response
Nagaraja, Sridevi
,
Reifman, Jaques
,
Mitrophanov, Alexander Y.
,
Vodovotz, Yoram
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.35 MB
Your tags:
english, 2015
5
Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis
Zhang, Wei
,
Chang, Jae-Woong
,
Lin, Lilong
,
Minn, Kay
,
Wu, Baolin
,
Chien, Jeremy
,
Yong, Jeongsik
,
Zheng, Hui
,
Kuang, Rui
,
Zhou, Xianghong Jasmine
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.72 MB
Your tags:
english, 2015
6
Elastohydrodynamics and Kinetics of Protein Patterning in the Immunological Synapse
Carlson, Andreas
,
Mahadevan, L.
,
Xia, Yu
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.67 MB
Your tags:
english, 2015
7
Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study
Ghosh, Soma
,
Chandra, Nagasuma
,
Vishveshwara, Saraswathi
,
MacKerell, Alexander
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 6.26 MB
Your tags:
english, 2015
8
Gene Expression Switching of Receptor Subunits in Human Brain Development
Bar-Shira, Ossnat
,
Maor, Ronnie
,
Chechik, Gal
,
Reimers, Mark
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.30 MB
Your tags:
english, 2015
9
Mirrored STDP Implements Autoencoder Learning in a Network of Spiking Neurons
Burbank, Kendra S.
,
Graham, Lyle J.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 8.04 MB
Your tags:
english, 2015
10
Wham: Identifying Structural Variants of Biological Consequence
Kronenberg, Zev N.
,
Osborne, Edward J.
,
Cone, Kelsey R.
,
Kennedy, Brett J.
,
Domyan, Eric T.
,
Shapiro, Michael D.
,
Elde, Nels C.
,
Yandell, Mark
,
Prlic, Andreas
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.56 MB
Your tags:
english, 2015
11
Maximizing Sensory Dynamic Range by Tuning the Cortical State to Criticality
Gautam, Shree Hari
,
Hoang, Thanh T.
,
McClanahan, Kylie
,
Grady, Stephen K.
,
Shew, Woodrow L.
,
Hilgetag, Claus C.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.30 MB
Your tags:
english, 2015
12
Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models
Mazzoni, Alberto
,
Lindén, Henrik
,
Cuntz, Hermann
,
Lansner, Anders
,
Panzeri, Stefano
,
Einevoll, Gaute T.
,
Roth, Arnd
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 8.07 MB
Your tags:
english, 2015
13
AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility
Ravindranath, Pradeep Anand
,
Forli, Stefano
,
Goodsell, David S.
,
Olson, Arthur J.
,
Sanner, Michel F.
,
Fetrow, Jacquelyn S.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 4.95 MB
Your tags:
english, 2015
14
Distinctive Behaviors of Druggable Proteins in Cellular Networks
Mitsopoulos, Costas
,
Schierz, Amanda C.
,
Workman, Paul
,
Al-Lazikani, Bissan
,
Vajda, Sandor
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.12 MB
Your tags:
english, 2015
15
Computer Simulations Imply Forelimb-Dominated Underwater Flight in Plesiosaurs
Liu, Shiqiu
,
Smith, Adam S.
,
Gu, Yuting
,
Tan, Jie
,
Liu, C. Karen
,
Turk, Greg
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 5.07 MB
Your tags:
english, 2015
16
Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules
Johnson, Gregory R.
,
Li, Jieyue
,
Shariff, Aabid
,
Rohde, Gustavo K.
,
Murphy, Robert F.
,
Tresch, Achim
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 6.76 MB
Your tags:
english, 2015
17
Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population
Immonen, Taina T.
,
Conway, Jessica M.
,
Romero-Severson, Ethan O.
,
Perelson, Alan S.
,
Leitner, Thomas
,
Kouyos, Roger Dimitri
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 7.07 MB
Your tags:
english, 2015
18
The Essential Complexity of Auditory Receptive Fields
Thorson, Ivar L.
,
Liénard, Jean
,
David, Stephen V.
,
Theunissen, Frédéric E.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.13 MB
Your tags:
english, 2015
19
The Role of Symmetric Stem Cell Divisions in Tissue Homeostasis
Yang, Jienian
,
Plikus, Maksim V.
,
Komarova, Natalia L.
,
Traulsen, Arne
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.63 MB
Your tags:
english, 2015
20
Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics
Ben Imeddourene, Akli
,
Elbahnsi, Ahmad
,
Guéroult, Marc
,
Oguey, Christophe
,
Foloppe, Nicolas
,
Hartmann, Brigitte
,
MacKerell, Alexander
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.30 MB
Your tags:
english, 2015
21
MIiSR: Molecular Interactions in Super-Resolution Imaging Enables the Analysis of Protein Interactions, Dynamics and Formation of Multi-protein Structures
Caetano, Fabiana A.
,
Dirk, Brennan S.
,
Tam, Joshua H. K.
,
Cavanagh, P. Craig
,
Goiko, Maria
,
Ferguson, Stephen S. G.
,
Pasternak, Stephen H.
,
Dikeakos, Jimmy D.
,
de Bruyn, John R.
,
Heit, Bryan
,
Mac Gabh
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 7.72 MB
Your tags:
english, 2015
22
Melanoma Cell Colony Expansion Parameters Revealed by Approximate Bayesian Computation
Vo, Brenda N.
,
Drovandi, Christopher C.
,
Pettitt, Anthony N.
,
Pettet, Graeme J.
,
Byrne, Helen
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.92 MB
Your tags:
english, 2015
23
A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs
Miao, Zhichao
,
Westhof, Eric
,
Chen, Shi-Jie
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 9.74 MB
Your tags:
english, 2015
24
Where’s the Noise? Key Features of Spontaneous Activity and Neural Variability Arise through Learning in a Deterministic Network
Hartmann, Christoph
,
Lazar, Andreea
,
Nessler, Bernhard
,
Triesch, Jochen
,
Bethge, Matthias
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.37 MB
Your tags:
english, 2015
25
Cerebellar Nuclear Neurons Use Time and Rate Coding to Transmit Purkinje Neuron Pauses
Sudhakar, Shyam Kumar
,
Torben-Nielsen, Benjamin
,
De Schutter, Erik
,
Blackwell, Kim T.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 4.57 MB
Your tags:
english, 2015
26
Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations
Hutchings, Frances
,
Han, Cheol E.
,
Keller, Simon S.
,
Weber, Bernd
,
Taylor, Peter N.
,
Kaiser, Marcus
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.50 MB
Your tags:
english, 2015
27
Cultured Cortical Neurons Can Perform Blind Source Separation According to the Free-Energy Principle
Isomura, Takuya
,
Kotani, Kiyoshi
,
Jimbo, Yasuhiko
,
Beck, Jeff
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 4.37 MB
Your tags:
english, 2015
28
Multistability in Large Scale Models of Brain Activity
Golos, Mathieu
,
Jirsa, Viktor
,
Daucé, Emmanuel
,
Honey, Christopher J
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 14.66 MB
Your tags:
english, 2015
29
Defectors Can Create Conditions That Rescue Cooperation
Waite, Adam James
,
Cannistra, Caroline
,
Shou, Wenying
,
Traulsen, Arne
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.72 MB
Your tags:
english, 2015
30
Anxiety-Like Behavioural Inhibition Is Normative under Environmental Threat-Reward Correlations
Bach, Dominik R.
,
Faisal, Aldo A
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.74 MB
Your tags:
english, 2015
31
The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome
Bartha, István
,
Rausell, Antonio
,
McLaren, Paul J.
,
Mohammadi, Pejman
,
Tardaguila, Manuel
,
Chaturvedi, Nimisha
,
Fellay, Jacques
,
Telenti, Amalio
,
Punta, Marco
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 665 KB
Your tags:
english, 2015
32
Simple Plans or Sophisticated Habits? State, Transition and Learning Interactions in the Two-Step Task
Akam, Thomas
,
Costa, Rui
,
Dayan, Peter
,
Daunizeau, Jean
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.69 MB
Your tags:
english, 2015
33
Protein Connectivity in Chemotaxis Receptor Complexes
Eismann, Stephan
,
Endres, Robert G.
,
Rao, Christopher V.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.58 MB
Your tags:
english, 2015
34
The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects
Kamola, Piotr J.
,
Nakano, Yuko
,
Takahashi, Tomoko
,
Wilson, Paul A.
,
Ui-Tei, Kumiko
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 878 KB
Your tags:
english, 2015
35
Correction: Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 115 KB
Your tags:
english, 2015
36
Model-Based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma
Buder, Thomas
,
Deutsch, Andreas
,
Klink, Barbara
,
Voss-Böhme, Anja
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.26 MB
Your tags:
english, 2015
37
Modeling the Slow CD4+ T Cell Decline in HIV-Infected Individuals
Wang, Sunpeng
,
Hottz, Patricia
,
Schechter, Mauro
,
Rong, Libin
,
Asquith, Becca
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.95 MB
Your tags:
english, 2015
38
Correction: Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 259 KB
Your tags:
english, 2015
39
Clustered Desynchronization from High-Frequency Deep Brain Stimulation
Wilson, Dan
,
Moehlis, Jeff
,
Diedrichsen, Jörn
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 5.16 MB
Your tags:
english, 2015
40
Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces
Kursawe, Jochen
,
Brodskiy, Pavel A.
,
Zartman, Jeremiah J.
,
Baker, Ruth E.
,
Fletcher, Alexander G.
,
Umulis, David
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 7.19 MB
Your tags:
english, 2015
41
Topological Phenotypes Constitute a New Dimension in the Phenotypic Space of Leaf Venation Networks
Ronellenfitsch, Henrik
,
Lasser, Jana
,
Daly, Douglas C.
,
Katifori, Eleni
,
Scarpella, Enrico
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.26 MB
Your tags:
english, 2015
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