Volume 11; Issue 7

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PLoS Computational Biology
Volume 11; Issue 7

PLoS Computational Biology

Volume 11; Issue 7

1

Emergence of Slow-Switching Assemblies in Structured Neuronal Networks

Schaub, Michael T., Billeh, Yazan N., Anastassiou, Costas A., Koch, Christof, Barahona, Mauricio, Bassett, Danielle S

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.89 MB

english, 2015

2

Geometry of the Gene Expression Space of Individual Cells

Korem, Yael, Szekely, Pablo, Hart, Yuval, Sheftel, Hila, Hausser, Jean, Mayo, Avi, Rothenberg, Michael E., Kalisky, Tomer, Alon, Uri, Iakoucheva, Lilia M.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 6.26 MB

english, 2015

3

Quantitative Analysis of the Association Angle between T-cell Receptor Vα/Vβ Domains Reveals Important Features for Epitope Recognition

Hoffmann, Thomas, Krackhardt, Angela M., Antes, Iris, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.48 MB

english, 2015

4

A Computational Model of a Descending Mechanosensory Pathway Involved in Active Tactile Sensing

Ache, Jan M., Dürr, Volker, Faisal, Aldo A

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

5

Asynchronous Rate Chaos in Spiking Neuronal Circuits

Harish, Omri, Hansel, David, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.45 MB

english, 2015

6

Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa

Wesolowski, Amy, O’Meara, Wendy Prudhomme, Eagle, Nathan, Tatem, Andrew J., Buckee, Caroline O., Ferrari, Matthew

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.86 MB

english, 2015

7

Genome Modeling System: A Knowledge Management Platform for Genomics

Griffith, Malachi, Griffith, Obi L., Smith, Scott M., Ramu, Avinash, Callaway, Matthew B., Brummett, Anthony M., Kiwala, Michael J., Coffman, Adam C., Regier, Allison A., Oberkfell, Ben J., Sanderson,

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.57 MB

english, 2015

8

Fast Simulation of Mechanical Heterogeneity in the Electrically Asynchronous Heart Using the MultiPatch Module

Walmsley, John, Arts, Theo, Derval, Nicolas, Bordachar, Pierre, Cochet, Hubert, Ploux, Sylvain, Prinzen, Frits W., Delhaas, Tammo, Lumens, Joost, McCulloch, Andrew D.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.98 MB

english, 2015

9

Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences

Sevy, Alexander M., Jacobs, Tim M., Crowe, James E., Meiler, Jens, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.97 MB

english, 2015

10

Hydrophobic Gating of Ion Permeation in Magnesium Channel CorA

Neale, Chris, Chakrabarti, Nilmadhab, Pomorski, Pawel, Pai, Emil F., Pomès, Régis, Tajkhorshid, Emad

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

11

High Accuracy Decoding of Dynamical Motion from a Large Retinal Population

Marre, Olivier, Botella-Soler, Vicente, Simmons, Kristina D., Mora, Thierry, Tkačik, Gašper, Berry, Michael J., Bethge, Matthias

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.46 MB

english, 2015

12

Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments

Li, Tong, Tracka, Malgorzata B., Uddin, Shahid, Casas-Finet, Jose, Jacobs, Donald J., Livesay, Dennis R., de Groot, Bert L.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 7.00 MB

english, 2015

13

What Can Interaction Webs Tell Us About Species Roles?

Sander, Elizabeth L., Wootton, J. Timothy, Allesina, Stefano, Borrett, Stuart

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.85 MB

english, 2015

14

Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks

Navlakha, Saket, Barth, Alison L., Bar-Joseph, Ziv, Graham, Lyle J.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.86 MB

english, 2015

15

Dynamical Localization of DivL and PleC in the Asymmetric Division Cycle of Caulobacter crescentus: A Theoretical Investigation of Alternative Models

Subramanian, Kartik, Paul, Mark R., Tyson, John J., Stelling, Jörg

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.37 MB

english, 2015

16

Modeling Inhibitory Interneurons in Efficient Sensory Coding Models

Zhu, Mengchen, Rozell, Christopher J., Bethge, Matthias

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.46 MB

english, 2015

17

Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes

Zhang, Lu, Silva, Daniel-Adriano, Pardo-Avila, Fátima, Wang, Dong, Huang, Xuhui, Chen, Shi-Jie

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.67 MB

english, 2015

18

How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations

Tanaka, Tomohiro, Hori, Naoto, Takada, Shoji, MacKerell, Alexander

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.87 MB

english, 2015

19

Stability of Neuronal Networks with Homeostatic Regulation

Harnack, Daniel, Pelko, Miha, Chaillet, Antoine, Chitour, Yacine, van Rossum, Mark C.W., Gutkin, Boris S.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 882 KB

english, 2015

20

Optimal Prediction of Moving Sound Source Direction in the Owl

Cox, Weston, Fischer, Brian J., Beck, Jeff

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.01 MB

english, 2015

21

Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community

Hamilton, Joshua J., Calixto Contreras, Montserrat, Reed, Jennifer L., Maranas, Costas D.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.37 MB

english, 2015

22

Neutral Models of Microbiome Evolution

Zeng, Qinglong, Sukumaran, Jeet, Wu, Steven, Rodrigo, Allen, Wilke, Claus O.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

23

Correction: An Integrative Approach for Modeling and Simulation of Heterocyst Pattern Formation in Cyanobacteria Filaments

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 124 KB

english, 2015

24

Interdomain Contacts Control Native State Switching of RfaH on a Dual-Funneled Landscape

Ramírez-Sarmiento, César A., Noel, Jeffrey K., Valenzuela, Sandro L., Artsimovitch, Irina, Wei, Guanghong

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.64 MB

english, 2015

25

A Developmental Switch for Hebbian Plasticity

Martens, Marijn B., Celikel, Tansu, Tiesinga, Paul H. E., Morrison, Abigail

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

26

Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes

Singh, Param Priya, Arora, Jatin, Isambert, Hervé, Christos, A.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.80 MB

english, 2015

27

Timing and Variability of Galactose Metabolic Gene Activation Depend on the Rate of Environmental Change

Nguyen-Huu, Truong D., Gupta, Chinmaya, Ma, Bo, Ott, William, Josić, Krešimir, Bennett, Matthew R., Beard, Daniel A

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.04 MB

english, 2015

28

Spike-Triggered Covariance Analysis Reveals Phenomenological Diversity of Contrast Adaptation in the Retina

Liu, Jian K., Gollisch, Tim, Graham, Lyle J.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.76 MB

english, 2015