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Volume 11; Issue 8
Main
PLoS Computational Biology
Volume 11; Issue 8
PLoS Computational Biology
Volume 11; Issue 8
1
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
King, Zachary A.
,
Dräger, Andreas
,
Ebrahim, Ali
,
Sonnenschein, Nikolaus
,
Lewis, Nathan E.
,
Palsson, Bernhard O.
,
Gardner, Paul P
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.62 MB
Your tags:
english, 2015
2
Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations
Rockah-Shmuel, Liat
,
Tóth-Petróczy, Ágnes
,
Tawfik, Dan S.
,
Orengo, Christine A.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.48 MB
Your tags:
english, 2015
3
Experimentally Verified Parameter Sets for Modelling Heterogeneous Neocortical Pyramidal-Cell Populations
Harrison, Paul M.
,
Badel, Laurent
,
Wall, Mark J.
,
Richardson, Magnus J. E.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.52 MB
Your tags:
english, 2015
4
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets
Lu, Songjian
,
Lu, Kevin N.
,
Cheng, Shi-Yuan
,
Hu, Bo
,
Ma, Xiaojun
,
Nystrom, Nicholas
,
Lu, Xinghua
,
Beerenwinkel, Niko
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.19 MB
Your tags:
english, 2015
5
Automatic Adaptation to Fast Input Changes in a Time-Invariant Neural Circuit
Bharioke, Arjun
,
Chklovskii, Dmitri B.
,
Kording, Konrad P.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.00 MB
Your tags:
english, 2015
6
Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data
Gritsenko, Alexey A.
,
Hulsman, Marc
,
Reinders, Marcel J. T.
,
de Ridder, Dick
,
Maranas, Costas D.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.15 MB
Your tags:
english, 2015
7
Impact of School Cycles and Environmental Forcing on the Timing of Pandemic Influenza Activity in Mexican States, May-December 2009
Tamerius, James
,
Viboud, Cécile
,
Shaman, Jeffrey
,
Chowell, Gerardo
,
Koelle, Katia
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.30 MB
Your tags:
english, 2015
8
An Optimal Free Energy Dissipation Strategy of the MinCDE Oscillator in Regulating Symmetric Bacterial Cell Division
Xiong, Liping
,
Lan, Ganhui
,
Kruse, Karsten
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.06 MB
Your tags:
english, 2015
9
Structure Learning in Bayesian Sensorimotor Integration
Genewein, Tim
,
Hez, Eduard
,
Razzaghpanah, Zeynab
,
Braun, Daniel A.
,
Berniker, Max
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.55 MB
Your tags:
english, 2015
10
Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker’s Yeast
Chen, Po-Wei
,
Fonseca, Luis L.
,
Hannun, Yusuf A.
,
Voit, Eberhard O.
,
Stelling, Jorg
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 6.54 MB
Your tags:
english, 2015
11
Correction: The Opponent Channel Population Code of Sound Location Is an Efficient Representation of Natural Binaural Sounds
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 119 KB
Your tags:
english, 2015
12
Flexible Modeling of Epidemics with an Empirical Bayes Framework
Brooks, Logan C.
,
Farrow, David C.
,
Hyun, Sangwon
,
Tibshirani, Ryan J.
,
Rosenfeld, Roni
,
Tanaka, Mark M.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.99 MB
Your tags:
english, 2015
13
Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Griffith, Malachi
,
Walker, Jason R.
,
Spies, Nicholas C.
,
Ainscough, Benjamin J.
,
Griffith, Obi L.
,
Ouellette, Francis
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.73 MB
Your tags:
english, 2015
14
Manifold Based Optimization for Single-Cell 3D Genome Reconstruction
Paulsen, Jonas
,
Gramstad, Odin
,
Collas, Philippe
,
Tanay, Amos
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 4.78 MB
Your tags:
english, 2015
15
Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data
Yang, Pengyi
,
Zheng, Xiaofeng
,
Jayaswal, Vivek
,
Hu, Guang
,
Yang, Jean Yee Hwa
,
Jothi, Raja
,
Iakoucheva, Lilia M.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.55 MB
Your tags:
english, 2015
16
Curation of the Mammalian Palmitoylome Indicates a Pivotal Role for Palmitoylation in Diseases and Disorders of the Nervous System and Cancers
Sanders, Shaun S.
,
Martin, Dale D. O.
,
Butland, Stefanie L.
,
Lavallée-Adam, Mathieu
,
Calzolari, Diego
,
Kay, Chris
,
Yates, John R.
,
Hayden, Michael R.
,
Ben-Tal, Nir
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.91 MB
Your tags:
english, 2015
17
A Stochastic Multiscale Model That Explains the Segregation of Axonal Microtubules and Neurofilaments in Neurological Diseases
Xue, Chuan
,
Shtylla, Blerta
,
Brown, Anthony
,
Mofrad, Mohammad R. K.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.24 MB
Your tags:
english, 2015
18
Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast
Tsai, Zing Tsung-Yeh
,
Shiu, Shin-Han
,
Tsai, Huai-Kuang
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.39 MB
Your tags:
english, 2015
19
Refinement and Pattern Formation in Neural Circuits by the Interaction of Traveling Waves with Spike-Timing Dependent Plasticity
Bennett, James E. M.
,
Bair, Wyeth
,
Doiron, Brent
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 4.89 MB
Your tags:
english, 2015
20
The Beta Cell in Its Cluster: Stochastic Graphs of Beta Cell Connectivity in the Islets of Langerhans
Striegel, Deborah A.
,
Hara, Manami
,
Periwal, Vipul
,
Pedersen, Morten Gram
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 6.18 MB
Your tags:
english, 2015
21
Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions
Amitai, Assaf
,
Toulouze, Mathias
,
Dubrana, Karine
,
Holcman, David
,
Morozov, Alexandre V
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.98 MB
Your tags:
english, 2015
22
A Bayesian Attractor Model for Perceptual Decision Making
Bitzer, Sebastian
,
Bruineberg, Jelle
,
Kiebel, Stefan J.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.21 MB
Your tags:
english, 2015
23
Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations
Kenzaki, Hiroo
,
Takada, Shoji
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 6.12 MB
Your tags:
english, 2015
24
Task-Driven Activity Reduces the Cortical Activity Space of the Brain: Experiment and Whole-Brain Modeling
Ponce-Alvarez, Adrián
,
He, Biyu J.
,
Hagmann, Patric
,
Deco, Gustavo
,
Graham, Lyle J.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.69 MB
Your tags:
english, 2015
25
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies
Yuan, Shuai
,
Johnston, H. Richard
,
Zhang, Guosheng
,
Li, Yun
,
Hu, Yi-Juan
,
Qin, Zhaohui S.
,
Gardner, Paul P
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.59 MB
Your tags:
english, 2015
26
Formation and Dynamics of Waves in a Cortical Model of Cholinergic Modulation
Roach, James P.
,
Ben-Jacob, Eshel
,
Sander, Leonard M.
,
Zochowski, Michal R.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.73 MB
Your tags:
english, 2015
27
Modeling and Classification of Kinetic Patterns of Dynamic Metabolic Biomarkers in Physical Activity
Breit, Marc
,
Netzer, Michael
,
Weinberger, Klaus M.
,
Baumgartner, Christian
,
Ouzounis, Christos A.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.62 MB
Your tags:
english, 2015
28
Testing Foundations of Biological Scaling Theory Using Automated Measurements of Vascular Networks
Newberry, Mitchell G
,
Ennis, Daniel B
,
Savage, Van M
,
Weitz, Joshua S
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 733 KB
Your tags:
english, 2015
29
Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks
Schillings, Claudia
,
Sunnåker, Mikael
,
Stelling, Jörg
,
Schwab, Christoph
,
Maranas, Costas D.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.13 MB
Your tags:
english, 2015
30
Self-Organization of Microcircuits in Networks of Spiking Neurons with Plastic Synapses
Ocker, Gabriel Koch
,
Litwin-Kumar, Ashok
,
Doiron, Brent
,
Latham, Peter E.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 2.79 MB
Your tags:
english, 2015
31
Functional Basis of Microorganism Classification
Zhu, Chengsheng
,
Delmont, Tom O.
,
Vogel, Timothy M.
,
Bromberg, Yana
,
Orengo, Christine A.
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 3.75 MB
Your tags:
english, 2015
32
Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees
Lykov, Kirill
,
Li, Xuejin
,
Lei, Huan
,
Pivkin, Igor V.
,
Karniadakis, George Em
,
Feng, James
Journal:
PLoS Computational Biology
Year:
2015
Language:
english
File:
PDF, 1.83 MB
Your tags:
english, 2015
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