Volume 12; Issue 10

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PLoS Computational Biology
Volume 12; Issue 10

PLoS Computational Biology

Volume 12; Issue 10

1

Stoichiometric Representation of Gene–Protein–Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

Machado, Daniel, Herrgård, Markus J., Rocha, Isabel, Patil, Kiran Raosaheb

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.32 MB

english, 2016

2

A Parsimonious Model of the Rabbit Action Potential Elucidates the Minimal Physiological Requirements for Alternans and Spiral Wave Breakup

Gray, Richard A., Pathmanathan, Pras, Beard, Daniel A

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 5.27 MB

english, 2016

3

AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework

Zheng, Qi, Grice, Elizabeth A., Poisot, Timothée

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.17 MB

english, 2016

4

SARAH Domain-Mediated MST2-RASSF Dimeric Interactions

Sánchez-Sanz, Goar, Tywoniuk, Bartłomiej, Matallanas, David, Romano, David, Nguyen, Lan K., Kholodenko, Boris N., Rosta, Edina, Kolch, Walter, Buchete, Nicolae-Viorel, Keskin, Ozlem

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.62 MB

english, 2016

5

Ten Simple Rules for Developing a MOOC

Manallack, David T., Yuriev, Elizabeth, Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 440 KB

english, 2016

6

Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein

Tian, Jianhui, López, Cesar A., Derdeyn, Cynthia A., Jones, Morris S., Pinter, Abraham, Korber, Bette, Gnanakaran, S., Rein, Alan

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.96 MB

english, 2016

7

Population Density Modulates Drug Inhibition and Gives Rise to Potential Bistability of Treatment Outcomes for Bacterial Infections

Karslake, Jason, Maltas, Jeff, Brumm, Peter, Wood, Kevin B., Gore, Jeff

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.68 MB

english, 2016

8

A Motor-Gradient and Clustering Model of the Centripetal Motility of MTOCs in Meiosis I of Mouse Oocytes

Khetan, Neha, Athale, Chaitanya A., McCulloch, Andrew D.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.86 MB

english, 2016

9

Retrospective Parameter Estimation and Forecast of Respiratory Syncytial Virus in the United States

Reis, Julia, Shaman, Jeffrey, Wilke, Claus O.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.99 MB

english, 2016

10

Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing

Lim, Hansaim, Poleksic, Aleksandar, Yao, Yuan, Tong, Hanghang, He, Di, Zhuang, Luke, Meng, Patrick, Xie, Lei, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 6.04 MB

english, 2016

11

Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells

Shinkai, Soya, Nozaki, Tadasu, Maeshima, Kazuhiro, Togashi, Yuichi, Morozov, Alexandre V

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.97 MB

english, 2016

12

Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters

Dreos, René, Ambrosini, Giovanna, Bucher, Philipp, Höfer, Thomas

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.54 MB

english, 2016

13

The Spatial Dynamics of Predators and the Benefits and Costs of Sharing Information

Barbier, Matthieu, Watson, James R., Alizon, Samuel

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.32 MB

english, 2016

14

Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches

Perez-Carrasco, Ruben, Guerrero, Pilar, Briscoe, James, Page, Karen M., Tusscher, Ten

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.96 MB

english, 2016

15

Apparent Motion Suppresses Responses in Early Visual Cortex: A Population Code Model

Van Humbeeck, Nathalie, Putzeys, Tom, Wagemans, Johan, Einhäuser, Wolfgang

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.10 MB

english, 2016

16

Theta-Gamma Coding Meets Communication-through-Coherence: Neuronal Oscillatory Multiplexing Theories Reconciled

McLelland, Douglas, VanRullen, Rufin, Gutkin, Boris S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.58 MB

english, 2016

17

PreTIS: A Tool to Predict Non-canonical 5’ UTR Translational Initiation Sites in Human and Mouse

Reuter, Kerstin, Biehl, Alexander, Koch, Laurena, Helms, Volkhard, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.73 MB

english, 2016

18

Catecholaminergic Regulation of Learning Rate in a Dynamic Environment

Jepma, Marieke, Murphy, Peter R., Nassar, Matthew R., Rangel-Gomez, Mauricio, Meeter, Martijn, Nieuwenhuis, Sander, O'Reilly, Jill X

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016