Volume 12; Issue 7

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PLoS Computational Biology
Volume 12; Issue 7

PLoS Computational Biology

Volume 12; Issue 7

1

PhyloBot: A Web Portal for Automated Phylogenetics, Ancestral Sequence Reconstruction, and Exploration of Mutational Trajectories

Hanson-Smith, Victor, Johnson, Alexander, Gardner, Paul P

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

2

A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism

Mih, Nathan, Brunk, Elizabeth, Bordbar, Aarash, Palsson, Bernhard O., Punta, Marco

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 5.53 MB

english, 2016

3

Ancestral Reconstruction

Joy, Jeffrey B., Liang, Richard H., McCloskey, Rosemary M., Nguyen, T., Poon, Art F. Y.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

4

Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering

Gao, Chuan, McDowell, Ian C., Zhao, Shiwen, Brown, Christopher D., Engelhardt, Barbara E., Zhou, Xianghong Jasmine

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.52 MB

english, 2016

5

Using Combined Diagnostic Test Results to Hindcast Trends of Infection from Cross-Sectional Data

Rydevik, Gustaf, Innocent, Giles T., Marion, Glenn, Davidson, Ross S., White, Piran C. L., Billinis, Charalambos, Barrow, Paul, Mertens, Peter P. C., Gavier-Widén, Dolores, Hutchings, Michael R., Hand

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

6

ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains

Torre, Emiliano, Canova, Carlos, Denker, Michael, Gerstein, George, Helias, Moritz, Grün, Sonja, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.16 MB

english, 2016

7

How People Use Social Information to Find out What to Want in the Paradigmatic Case of Inter-temporal Preferences

Moutoussis, Michael, Dolan, Raymond J., Dayan, Peter, Daunizeau, Jean

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

8

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

Pasolli, Edoardo, Truong, Duy Tin, Malik, Faizan, Waldron, Levi, Segata, Nicola, Eisen, Jonathan A.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.04 MB

english, 2016

9

Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions

Chen, Weitao, Nie, Qing, Yi, Tau-Mu, Chou, Ching-Shan, Edelstein-Keshet, Leah

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 5.77 MB

english, 2016

10

Near Equilibrium Calculus of Stem Cells in Application to the Airway Epithelium Lineage

Sun, Zheng, Plikus, Maksim V., Komarova, Natalia L., Pacheco, Jorge M.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

11

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

Zhong, Cuncong, Edlund, Anna, Yang, Youngik, McLean, Jeffrey S., Yooseph, Shibu, Elofsson, Arne

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.13 MB

english, 2016

12

Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory Signalling

Estrada, Javier, Andrew, Natalie, Gibson, Daniel, Chang, Frederick, Gnad, Florian, Gunawardena, Jeremy, Saucerman, Jeffrey J.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 4.04 MB

english, 2016

13

The Integrated Role of Wnt/β-Catenin, N-Glycosylation, and E-Cadherin-Mediated Adhesion in Network Dynamics

Vargas, Diego A., Sun, Meng, Sadykov, Khikmet, Kukuruzinska, Maria A., Zaman, Muhammad H., Rao, Christopher V.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.42 MB

english, 2016

14

Phasic Burst Stimulation: A Closed-Loop Approach to Tuning Deep Brain Stimulation Parameters for Parkinson’s Disease

Holt, Abbey B., Wilson, Dan, Shinn, Max, Moehlis, Jeff, Netoff, Theoden I., Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

15

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens

Chasman, Deborah, Walters, Kevin B., Lopes, Tiago J. S., Eisfeld, Amie J., Kawaoka, Yoshihiro, Roy, Sushmita, Leslie, Christina S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 11.38 MB

english, 2016

16

The Coda of the Transient Response in a Sensitive Cochlea: A Computational Modeling Study

Li, Yizeng, Grosh, Karl, Theunissen, Frédéric E.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

17

Intrinsic Valuation of Information in Decision Making under Uncertainty

Bennett, Daniel, Bode, Stefan, Brydevall, Maja, Warren, Hayley, Murawski, Carsten, O'Reilly, Jill X

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

18

Multiscale Simulations Suggest a Mechanism for the Association of the Dok7 PH Domain with PIP-Containing Membranes

Buyan, Amanda, Kalli, Antreas C., Sansom, Mark S. P., Briggs, James M.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.28 MB

english, 2016

19

Computing Biology

Nussinov, Ruth, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 106 KB

english, 2016

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