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Volume 13; Issue 1
Main
PLoS Computational Biology
Volume 13; Issue 1
PLoS Computational Biology
Volume 13; Issue 1
1
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
Wang, Sheng
,
Sun, Siqi
,
Li, Zhen
,
Zhang, Renyu
,
Xu, Jinbo
,
Schlessinger, Avner
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 4.50 MB
Your tags:
english, 2017
2
A Network Model of Local Field Potential Activity in Essential Tremor and the Impact of Deep Brain Stimulation
Yousif, Nada
,
Mace, Michael
,
Pavese, Nicola
,
Borisyuk, Roman
,
Nandi, Dipankar
,
Bain, Peter
,
Gutkin, Boris S.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.49 MB
Your tags:
english, 2017
3
Transcriptional and Post-Transcriptional Regulation of Thrombospondin-1 Expression: A Computational Model
Zhao, Chen
,
Isenberg, Jeffrey S.
,
Popel, Aleksander S.
,
Saucerman, Jeffrey J.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 3.24 MB
Your tags:
english, 2017
4
Could a Neuroscientist Understand a Microprocessor?
Jonas, Eric
,
Kording, Konrad Paul
,
Diedrichsen, Jörn
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.98 MB
Your tags:
english, 2017
5
Modeling an Excitable Biosynthetic Tissue with Inherent Variability for Paired Computational-Experimental Studies
Gokhale, Tanmay A.
,
Kim, Jong M.
,
Kirkton, Robert D.
,
Bursac, Nenad
,
Henriquez, Craig S.
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.67 MB
Your tags:
english, 2017
6
Use of chiral cell shape to ensure highly directional swimming in trypanosomes
Wheeler, Richard John
,
Rao, Christopher V.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 3.15 MB
Your tags:
english, 2017
7
Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes
Saeedghalati, Mohammadkarim
,
Farahpour, Farnoush
,
Budeus, Bettina
,
Lange, Anja
,
Westendorf, Astrid M.
,
Seifert, Marc
,
Küppers, Ralf
,
Hoffmann, Daniel
,
Matthews, Thomas
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 5.59 MB
Your tags:
english, 2017
8
Multiple Choice Neurodynamical Model of the Uncertain Option Task
Insabato, Andrea
,
Pannunzi, Mario
,
Deco, Gustavo
,
O’Reilly, Jill X
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 5.16 MB
Your tags:
english, 2017
9
A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models
Zimmer, Christoph
,
Yaesoubi, Reza
,
Cohen, Ted
,
Lessler, Justin
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.39 MB
Your tags:
english, 2017
10
A Validated Multiscale In-Silico Model for Mechano-sensitive Tumour Angiogenesis and Growth
Vavourakis, Vasileios
,
Wijeratne, Peter A.
,
Shipley, Rebecca
,
Loizidou, Marilena
,
Stylianopoulos, Triantafyllos
,
Hawkes, David J.
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 5.00 MB
Your tags:
english, 2017
11
Functionality and Robustness of Injured Connectomic Dynamics in C. elegans: Linking Behavioral Deficits to Neural Circuit Damage
Kunert, James M.
,
Maia, Pedro D.
,
Kutz, J. Nathan
,
Jbabdi, Saad
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.95 MB
Your tags:
english, 2017
12
Ten Simple Rules for Developing Usable Software in Computational Biology
List, Markus
,
Ebert, Peter
,
Albrecht, Felipe
,
Markel, Scott
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 759 KB
Your tags:
english, 2017
13
Morphological Transformation and Force Generation of Active Cytoskeletal Networks
Bidone, Tamara Carla
,
Jung, Wonyeong
,
Maruri, Daniel
,
Borau, Carlos
,
Kamm, Roger D.
,
Kim, Taeyoon
,
Asthagiri, Anand R.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 5.38 MB
Your tags:
english, 2017
14
Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing
Boland, Mary Regina
,
Karczewski, Konrad J.
,
Tatonetti, Nicholas P.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 897 KB
Your tags:
english, 2017
15
Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast
Gonçalves, Emanuel
,
Raguz Nakic, Zrinka
,
Zampieri, Mattia
,
Wagih, Omar
,
Ochoa, David
,
Sauer, Uwe
,
Beltrao, Pedro
,
Saez-Rodriguez, Julio
,
Patil, Kiran Raosaheb
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.91 MB
Your tags:
english, 2017
16
The Potential Role of Direct and Indirect Contacts on Infection Spread in Dairy Farm Networks
Rossi, Gianluigi
,
De Leo, Giulio A.
,
Pongolini, Stefano
,
Natalini, Silvano
,
Zarenghi, Luca
,
Ricchi, Matteo
,
Bolzoni, Luca
,
Ferrari, Matthew (Matt)
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.13 MB
Your tags:
english, 2017
17
Suboptimal Criterion Learning in Static and Dynamic Environments
Norton, Elyse H.
,
Fleming, Stephen M.
,
Daw, Nathaniel D.
,
Landy, Michael S.
,
Beierholm, Ulrik R.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 3.70 MB
Your tags:
english, 2017
18
Real Time Multiplicative Memory Amplification Mediated by Whole-Cell Scaling of Synaptic Response in Key Neurons
Reuveni, Iris
,
Ghosh, Sourav
,
Barkai, Edi
,
Morrison, Abigail
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 4.51 MB
Your tags:
english, 2017
19
Customized Regulation of Diverse Stress Response Genes by the Multiple Antibiotic Resistance Activator MarA
Rossi, Nicholas A.
,
Dunlop, Mary J.
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 1.68 MB
Your tags:
english, 2017
20
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility
Lamparter, David
,
Marbach, Daniel
,
Rueedi, Rico
,
Bergmann, Sven
,
Kutalik, Zoltán
,
Wang, Ting
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.05 MB
Your tags:
english, 2017
21
Correction: Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 265 KB
Your tags:
english, 2017
22
Inference of Transmission Network Structure from HIV Phylogenetic Trees
Giardina, Federica
,
Romero-Severson, Ethan Obie
,
Albert, Jan
,
Britton, Tom
,
Leitner, Thomas
,
Tanaka, Mark M.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 1.92 MB
Your tags:
english, 2017
23
Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin
Hacisuleyman, Aysima
,
Erman, Burak
,
Briggs, James M.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.65 MB
Your tags:
english, 2017
24
Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst
Holmes, William R.
,
Reyes de Mochel, Nabora Soledad
,
Wang, Qixuan
,
Du, Huijing
,
Peng, Tao
,
Chiang, Michael
,
Cinquin, Olivier
,
Cho, Ken
,
Nie, Qing
,
Schnell, Santiago
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 4.11 MB
Your tags:
english, 2017
25
Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies
Abel zur Wiesch, Pia
,
Clarelli, Fabrizio
,
Cohen, Ted
,
Tanaka, Mark M.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.89 MB
Your tags:
english, 2017
26
Correction: A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 266 KB
Your tags:
english, 2017
27
Inferring the Chemotactic Strategy of P. putida and E. coli Using Modified Kramers-Moyal Coefficients
Pohl, Oliver
,
Hintsche, Marius
,
Alirezaeizanjani, Zahra
,
Seyrich, Maximilian
,
Beta, Carsten
,
Stark, Holger
,
Tindall, Marcus J
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 3.35 MB
Your tags:
english, 2017
28
Optimal Sequential Immunization Can Focus Antibody Responses against Diversity Loss and Distraction
Wang, Shenshen
,
Shakhnovich, Eugene I.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.80 MB
Your tags:
english, 2017
29
THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites
Chang, Hsiao-Han
,
Worby, Colin J.
,
Yeka, Adoke
,
Nankabirwa, Joaniter
,
Kamya, Moses R.
,
Staedke, Sarah G.
,
Dorsey, Grant
,
Murphy, Maxwell
,
Neafsey, Daniel E.
,
Jeffreys, Anna E.
,
Hubbart, Christina
,
Roc
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.87 MB
Your tags:
english, 2017
30
Exploring the inhibitory effect of membrane tension on cell polarization
Wang, Weikang
,
Tao, Kuan
,
Wang, Jing
,
Yang, Gen
,
Ouyang, Qi
,
Wang, Yugang
,
Zhang, Lei
,
Liu, Feng
,
Sprinzak, David
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.01 MB
Your tags:
english, 2017
31
Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies
Tamba, Cox Lwaka
,
Ni, Yuan-Li
,
Zhang, Yuan-Ming
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 4.08 MB
Your tags:
english, 2017
32
Coevolutionary dynamics of phenotypic diversity and contingent cooperation
Wu, Te
,
Wang, Long
,
Fu, Feng
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 2.70 MB
Your tags:
english, 2017
33
The missing link: Predicting connectomes from noisy and partially observed tract tracing data
Hinne, Max
,
Meijers, Annet
,
Bakker, Rembrandt
,
Tiesinga, Paul H. E.
,
Mørup, Morten
,
van Gerven, Marcel A. J.
,
Jonas, Eric
Journal:
PLoS Computational Biology
Year:
2017
Language:
english
File:
PDF, 7.74 MB
Your tags:
english, 2017
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