Volume 13; Issue 2

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PLoS Computational Biology
Volume 13; Issue 2

PLoS Computational Biology

Volume 13; Issue 2

1

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

Verd, Berta, Crombach, Anton, Jaeger, Johannes, Umulis, David

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.02 MB

english, 2017

2

Two dynamic regimes in the human gut microbiome

Gibbons, Sean M., Kearney, Sean M., Smillie, Chris S., Alm, Eric J., Borenstein, Elhanan

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

3

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

Henriques, David, Villaverde, Alejandro F., Rocha, Miguel, Saez-Rodriguez, Julio, Banga, Julio R., Tan, Kai

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.09 MB

english, 2017

4

Imputation for transcription factor binding predictions based on deep learning

Qin, Qian, Feng, Jianxing, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 1.87 MB

english, 2017

5

Insect Bio-inspired Neural Network Provides New Evidence on How Simple Feature Detectors Can Enable Complex Visual Generalization and Stimulus Location Invariance in the Miniature Brain of Honeybees

Roper, Mark, Fernando, Chrisantha, Chittka, Lars, Boeddeker, Norbert

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.00 MB

english, 2017

6

Human mobility and the spatial transmission of influenza in the United States

Charu, Vivek, Zeger, Scott, Gog, Julia, Bjørnstad, Ottar N., Kissler, Stephen, Simonsen, Lone, Grenfell, Bryan T., Viboud, Cécile, Salathé, Marcel

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.68 MB

english, 2017

7

Fundamental Activity Constraints Lead to Specific Interpretations of the Connectome

Schuecker, Jannis, Schmidt, Maximilian, van Albada, Sacha J., Diesmann, Markus, Helias, Moritz, Diedrichsen, Jörn

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 4.85 MB

english, 2017

8

A Causal Inference Model Explains Perception of the McGurk Effect and Other Incongruent Audiovisual Speech

Magnotti, John F., Beauchamp, Michael S., Gershman, Samuel J.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.46 MB

english, 2017

9

A mathematical model of calcium dynamics in HSY cells

Han, Jung Min, Tanimura, Akihiko, Kirk, Vivien, Sneyd, James, McCulloch, Andrew D.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.32 MB

english, 2017

10

Correction: Emergence of Slow-Switching Assemblies in Structured Neuronal Networks

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 271 KB

english, 2017

11

Computational investigation of sphingosine kinase 1 (SphK1) and calcium dependent ERK1/2 activation downstream of VEGFR2 in endothelial cells

Bazzazi, Hojjat, Popel, Aleksander S., Diamond, Scott L

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.16 MB

english, 2017

12

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control

Bartha, István, McLaren, Paul J., Brumme, Chanson, Harrigan, Richard, Telenti, Amalio, Fellay, Jacques, Müller, Viktor

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 525 KB

english, 2017

13

Mindboggling morphometry of human brains

Klein, Arno, Ghosh, Satrajit S., Bao, Forrest S., Giard, Joachim, Häme, Yrjö, Stavsky, Eliezer, Lee, Noah, Rossa, Brian, Reuter, Martin, Chaibub Neto, Elias, Keshavan, Anisha, Schneidman, Dina

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 8.88 MB

english, 2017

14

Effects of FGFR2 kinase activation loop dynamics on catalytic activity

Karp, Jerome M., Sparks, Samuel, Cowburn, David, Marti-Renom, Marc A.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.39 MB

english, 2017

15

A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons

Chen, Yen-Fu, Lin, Hsiu-Chuan, Chuang, Kai-Neng, Lin, Chih-Hsu, Yen, Hsueh-Chi S., Yeang, Chen-Hsiang, Plotkin, Joshua B.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.54 MB

english, 2017

16

Correction: When Optimal Feedback Control Is Not Enough: Feedforward Strategies Are Required for Optimal Control with Active Sensing

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 265 KB

english, 2017

17

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism

Ewald, Jan, Bartl, Martin, Dandekar, Thomas, Kaleta, Christoph, Mahadevan, Radhakrishnan

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 11.11 MB

english, 2017

18

Co-emergence of multi-scale cortical activities of irregular firing, oscillations and avalanches achieves cost-efficient information capacity

Yang, Dong-Ping, Zhou, Hai-Jun, Zhou, Changsong, Hilgetag, Claus C.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.16 MB

english, 2017

19

Comparing individual-based approaches to modelling the self-organization of multicellular tissues

Osborne, James M., Fletcher, Alexander G., Pitt-Francis, Joe M., Maini, Philip K., Gavaghan, David J., Nie, Qing

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 6.77 MB

english, 2017

20

graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture

Chung, Dongjun, Kim, Hang J., Zhao, Hongyu, Karchin, Rachel

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.02 MB

english, 2017

21

Mathematical models of tissue stem and transit target cell divisions and the risk of radiation- or smoking-associated cancer

Little, Mark P., Hendry, Jolyon H., Komarova, Natalia L.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.31 MB

english, 2017

22

Correction: Psychotic Experiences and Overhasty Inferences Are Related to Maladaptive Learning

Stuke, Heiner, Stuke, Hannes, Weilnhammer, Veith Andreas, Schmack, Katharina

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 226 KB

english, 2017

23

Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli

Millard, Pierre, Smallbone, Kieran, Mendes, Pedro, Maranas, Costas D.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 4.76 MB

english, 2017

24

The genotype-phenotype map of an evolving digital organism

Fortuna, Miguel A., Zaman, Luis, Ofria, Charles, Wagner, Andreas, Wilke, Claus O.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017