Volume 13; Issue 6

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PLoS Computational Biology
Volume 13; Issue 6

PLoS Computational Biology

Volume 13; Issue 6

1

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Wick, Ryan R., Judd, Louise M., Gorrie, Claire L., Holt, Kathryn E., Phillippy, Adam M.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 7.22 MB

english, 2017

2

Comorbidities in the diseasome are more apparent than real: What Bayesian filtering reveals about the comorbidities of depression

Marx, Peter, Antal, Peter, Bolgar, Bence, Bagdy, Gyorgy, Deakin, Bill, Juhasz, Gabriella, Iakoucheva, Lilia M.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 8.94 MB

english, 2017

3

Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes

Baroukh, Caroline, Turon, Violette, Bernard, Olivier, Patil, Kiran Raosaheb

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.42 MB

english, 2017

4

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

Jongeneel, C. Victor, Achinike-Oduaran, Ovokeraye, Adebiyi, Ezekiel, Adebiyi, Marion, Adeyemi, Seun, Akanle, Bola, Aron, Shaun, Ashano, Efejiro, Bendou, Hocine, Botha, Gerrit, Chimusa, Emile, Choudhur

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 536 KB

english, 2017

5

A comprehensive overview and evaluation of circular RNA detection tools

Zeng, Xiangxiang, Lin, Wei, Guo, Maozu, Zou, Quan, Gardner, Paul P.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 17.05 MB

english, 2017

6

A review of active learning approaches to experimental design for uncovering biological networks

Sverchkov, Yuriy, Craven, Mark, Huang, Haiyan

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.21 MB

english, 2017

7

Breakdown of local information processing may underlie isoflurane anesthesia effects

Wollstadt, Patricia, Sellers, Kristin K., Rudelt, Lucas, Priesemann, Viola, Hutt, Axel, Fröhlich, Flavio, Wibral, Michael, Hilgetag, Claus C.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 6.26 MB

english, 2017

8

Detecting similar binding pockets to enable systems polypharmacology

Duran-Frigola, Miquel, Siragusa, Lydia, Ruppin, Eytan, Barril, Xavier, Cruciani, Gabriele, Aloy, Patrick, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.38 MB

english, 2017

9

Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease

Wang, Maxwell B., Owen, Julia P., Mukherjee, Pratik, Raj, Ashish, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 9.94 MB

english, 2017

10

Olfactory learning without the mushroom bodies: Spiking neural network models of the honeybee lateral antennal lobe tract reveal its capacities in odour memory tasks of varied complexities

MaBouDi, HaDi, Shimazaki, Hideaki, Giurfa, Martin, Chittka, Lars, Kreiman, Gabriel

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.71 MB

english, 2017

11

Fast and general tests of genetic interaction for genome-wide association studies

Frånberg, Mattias, Strawbridge, Rona J., Hamsten, Anders, de Faire, Ulf, Lagergren, Jens, Sennblad, Bengt, Listgarten, Jennifer

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.03 MB

english, 2017

12

2017 ISCB Accomplishment by a Senior Scientist Award given to Pavel Pevzner

Fogg, Christiana N., Kovats, Diane E., Berger, Bonnie

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 4.29 MB

english, 2017

13

Landscape and variation of novel retroduplications in 26 human populations

Zhang, Yan, Li, Shantao, Abyzov, Alexej, Gerstein, Mark B., Iakoucheva, Lilia M.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.62 MB

english, 2017

14

MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures

Bradley, Anthony R., Rose, Alexander S., Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M., Prlić, Andreas, Rose, Peter W., Schneidman, Dina

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.80 MB

english, 2017

15

Robust transmission of rate coding in the inhibitory Purkinje cell to cerebellar nuclei pathway in awake mice

Abbasi, Samira, Hudson, Amber E., Maran, Selva K., Cao, Ying, Abbasi, Ataollah, Heck, Detlef H., Jaeger, Dieter, Diedrichsen, Jörn

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 11.35 MB

english, 2017

16

Inferring repeat-protein energetics from evolutionary information

Espada, Rocío, Parra, R. Gonzalo, Mora, Thierry, Walczak, Aleksandra M., Ferreiro, Diego U., Morozov, Alexandre V

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.45 MB

english, 2017

17

Mitochondrial respiration and ROS emission during β-oxidation in the heart: An experimental-computational study

Cortassa, Sonia, Sollott, Steven J., Aon, Miguel A., McCulloch, Andrew D.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.53 MB

english, 2017

18

Leveraging functional annotations in genetic risk prediction for human complex diseases

Hu, Yiming, Lu, Qiongshi, Powles, Ryan, Yao, Xinwei, Yang, Can, Fang, Fang, Xu, Xinran, Zhao, Hongyu, Rigoutsos, Isidore

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.22 MB

english, 2017

19

Atrial arrhythmogenicity of KCNJ2 mutations in short QT syndrome: Insights from virtual human atria

Whittaker, Dominic G., Ni, Haibo, El Harchi, Aziza, Hancox, Jules C., Zhang, Henggui, Panfilov, Alexander V

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 10.89 MB

english, 2017

20

Transmembrane helical interactions in the CFTR channel pore

Das, Jhuma, Aleksandrov, Andrei A., Cui, Liying, He, Lihua, Riordan, John R., Dokholyan, Nikolay V., Jacobs, Donald

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 11.17 MB

english, 2017

21

An efficient coding theory for a dynamic trajectory predicts non-uniform allocation of entorhinal grid cells to modules

Mosheiff, Noga, Agmon, Haggai, Moriel, Avraham, Burak, Yoram, Einevoll, Gaute T.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 3.78 MB

english, 2017

22

Rosetta:MSF: a modular framework for multi-state computational protein design

Löffler, Patrick, Schmitz, Samuel, Hupfeld, Enrico, Sterner, Reinhard, Merkl, Rainer, Maranas, Costas D.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.07 MB

english, 2017

23

A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data

Lai, En-Yu, Chen, Yi-Hau, Wu, Kun-Pin, Fetrow, Jacquelyn S.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 8.84 MB

english, 2017

24

MFPred: Rapid and accurate prediction of protein-peptide recognition multispecificity using self-consistent mean field theory

Rubenstein, Aliza B., Pethe, Manasi A., Khare, Sagar D., Panchenko, Anna R. R.

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 6.14 MB

english, 2017

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