Volume 15; Issue 5

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PLoS Computational Biology
Volume 15; Issue 5

PLoS Computational Biology

Volume 15; Issue 5

1

Identification of avian flapping motion from non-volant winged dinosaurs based on modal effective mass analysis

Talori, Yaser Saffar, Zhao, Jing-Shan, Liu, Yun-Fei, Lu, Wen-Xiu, Li, Zhi-Heng, O'Connor, Jingmai Kathleen, Martins, Daniel

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.04 MB

english, 2019

2

Balance of mechanical forces drives endothelial gap formation and may facilitate cancer and immune-cell extravasation

Escribano, Jorge, Chen, Michelle B., Moeendarbary, Emad, Cao, Xuan, Shenoy, Vivek, Garcia-Aznar, Jose Manuel, Kamm, Roger D., Spill, Fabian, McCulloch, Andrew D.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.27 MB

english, 2019

3

Experimentally guided computational antibody affinity maturation with de novo docking modelling and rational design

Cannon, Daniel A., Shan, Lu, Du, Qun, Shirinian, Lena, Rickert, Keith W., Rosenthal, Kim L., Korade, Martin, van Vlerken-Ysla, Lilian E., Buchanan, Andrew, Vaughan, Tristan J., Damschroder, Melissa M.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 7.46 MB

english, 2019

4

EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches

Liao, Chi-Chou, Chen, Liang-Jwu, Lo, Shuen-Fang, Chen, Chi-Wei, Chu, Yen-Wei, Gromiha, M. Michael

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.96 MB

english, 2019

5

Identification of avian flapping motion from non-volant winged dinosaurs based on modal effective mass analysis

Talori, Yaser Saffar, Zhao, Jing-Shan, Liu, Yun-Fei, Lu, Wen-Xiu, Li, Zhi-Heng, O'Connor, Jingmai Kathleen, Martins, Daniel

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.04 MB

2019

6

An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis

Karagianni, Niki, Kranidioti, Ksanthi, Fikas, Nikolaos, Tsochatzidou, Maria, Chouvardas, Panagiotis, Denis, Maria C., Kollias, George, Nikolaou, Christoforos, Cantacessi, Cinzia

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.37 MB

english, 2019

7

A neuromechanistic model for rhythmic beat generation

Bose, Amitabha, Byrne, Áine, Rinzel, John, Gutkin, Boris S.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.90 MB

english, 2019

8

A dynamic network model of temporal receptive fields in primary auditory cortex

Rahman, Monzilur, Willmore, Ben D. B., King, Andrew J., Harper, Nicol S., Theunissen, Frédéric E.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.77 MB

english, 2019

9

A quick guide for using Microsoft OneNote as an electronic laboratory notebook

Guerrero, Santiago, López-Cortés, Andrés, García-Cárdenas, Jennyfer M., Saa, Pablo, Indacochea, Alberto, Armendáriz-Castillo, Isaac, Zambrano, Ana Karina, Yumiceba, Verónica, Pérez-Villa, Andy, Guevar

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 914 KB

english, 2019

10

DigChem: Identification of disease-gene-chemical relationships from Medline abstracts

Kim, Jeongkyun, Kim, Jung-jae, Lee, Hyunju, Zhang, Zhaolei

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.00 MB

english, 2019

11

Ten quick tips for using a Raspberry Pi

Fletcher, Anthony C., Mura, Cameron, Ouellette, Francis

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 1.74 MB

2019

12

Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making

Dunovan, Kyle, Vich, Catalina, Clapp, Matthew, Verstynen, Timothy, Rubin, Jonathan, Bogacz, Rafal

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 5.12 MB

2019

13

Amplifying the redistribution of somato-dendritic inhibition by the interplay of three interneuron types

Hertäg, Loreen, Sprekeler, Henning, Cuntz, Hermann

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.75 MB

english, 2019

14

Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer

Malyutina, Alina, Majumder, Muntasir Mamun, Wang, Wenyu, Pessia, Alberto, Heckman, Caroline A., Tang, Jing, Gallo, James

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.27 MB

english, 2019

15

Interacting cells driving the evolution of multicellular life cycles

Gao, Yuanxiao, Traulsen, Arne, Pichugin, Yuriy, Komarova, Natalia L.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.56 MB

english, 2019

16

Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEG

Schaworonkow, Natalie, Nikulin, Vadim V., Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.50 MB

english, 2019

17

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

Javanainen, Matti, Enkavi, Giray, Guixà-Gonzaléz, Ramon, Kulig, Waldemar, Martinez-Seara, Hector, Levental, Ilya, Vattulainen, Ilpo, de Groot, Bert L.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 7.35 MB

english, 2019

18

A neuromechanistic model for rhythmic beat generation

Bose, Amitabha, Byrne, Áine, Rinzel, John, Gutkin, Boris S.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.90 MB

2019

19

Forecasting national and regional influenza-like illness for the USA

Ben-Nun, Michal, Riley, Pete, Turtle, James, Bacon, David P., Riley, Steven, Chowell, Gerardo

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 5.19 MB

english, 2019

20

Wisdom of crowds in computational biology

Papin, Jason A., Mac Gabhann, Feilim

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 253 KB

english, 2019

21

DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images

Kulikov, Victor, Guo, Syuan-Ming, Stone, Matthew, Goodman, Allen, Carpenter, Anne, Bathe, Mark, Lempitsky, Victor, Vogelstein, Joshua

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 8.52 MB

2019

22

Ten quick tips for biocuration

Tang, Y. Amy, Pichler, Klemens, Füllgrabe, Anja, Lomax, Jane, Malone, James, Munoz-Torres, Monica C., Vasant, Drashtti V., Williams, Eleanor, Haendel, Melissa, Ouellette, Francis

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 414 KB

english, 2019

23

Evolution of major histocompatibility complex gene copy number

Bentkowski, Piotr, Radwan, Jacek, van Boven, Michiel

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.55 MB

english, 2019

24

Leveraging genetic interactions for adverse drug-drug interaction prediction

Qian, Sheng, Liang, Siqi, Yu, Haiyuan, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.12 MB

english, 2019

25

Comprehensively benchmarking applications for detecting copy number variation

Zhang, Le, Bai, Wanyu, Yuan, Na, Du, Zhenglin, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.31 MB

english, 2019

26

Modeling enamel matrix secretion in mammalian teeth

Häkkinen, Teemu J., Sova, S. Susanna, Corfe, Ian J., Tjäderhane, Leo, Hannukainen, Antti, Jernvall, Jukka, Nie, Qing

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.44 MB

english, 2019

27

Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias

Cai, Ming Bo, Schuck, Nicolas W., Pillow, Jonathan W., Niv, Yael, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.54 MB

english, 2019

28

Host contact dynamics shapes richness and dominance of pathogen strains

Pinotti, Francesco, Fleury, Éric, Guillemot, Didier, Böelle, Pierre-Yves, Poletto, Chiara, Lloyd-Smith, James

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.05 MB

english, 2019

29

Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features

Knowles, David A., Bouchard, Gina, Plevritis, Sylvia, Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.15 MB

english, 2019

30

Efficient algorithms to discover alterations with complementary functional association in cancer

Sarto Basso, Rebecca, Hochbaum, Dorit S., Vandin, Fabio, Szczurek, Ewa

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 5.49 MB

english, 2019

31

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models

Pandey, Vikash, Hadadi, Noushin, Hatzimanikatis, Vassily, Patil, Kiran Raosaheb

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.25 MB

english, 2019

32

Notice of Republication: Ten simple rules for organizing a webinar series

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 271 KB

english, 2019

33

Modeling visual performance differences ‘around’ the visual field: A computational observer approach

Kupers, Eline R., Carrasco, Marisa, Winawer, Jonathan, Einhäuser, Wolfgang

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 9.79 MB

english, 2019

34

Close proximity interactions support transmission of ESBL-K. pneumoniae but not ESBL-E. coli in healthcare settings

Duval, Audrey, Obadia, Thomas, Boëlle, Pierre-Yves, Fleury, Eric, Herrmann, Jean-Louis, Guillemot, Didier, Temime, Laura, Opatowski, Lulla, Lloyd-Smith, James

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.09 MB

english, 2019

35

Beyond core object recognition: Recurrent processes account for object recognition under occlusion

Rajaei, Karim, Mohsenzadeh, Yalda, Ebrahimpour, Reza, Khaligh-Razavi, Seyed-Mahdi, Isik, Leyla

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.28 MB

english, 2019

36

Comment on "A comprehensive overview and evaluation of circular RNA detection tools"

Chen, Chia-Ying, Chuang, Trees-Juen, Gardner, Paul P

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.54 MB

english, 2019

37

Simulation of single-protein nanopore sensing shows feasibility for whole-proteome identification

Ohayon, Shilo, Girsault, Arik, Nasser, Maisa, Shen-Orr, Shai, Meller, Amit, Aksimentiev, Aleksei

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 8.43 MB

english, 2019

38

Perturbing low dimensional activity manifolds in spiking neuronal networks

Wärnberg, Emil, Kumar, Arvind, Latham, Peter E.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.21 MB

english, 2019

39

Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer

Malyutina, Alina, Majumder, Muntasir Mamun, Wang, Wenyu, Pessia, Alberto, Heckman, Caroline A., Tang, Jing, Gallo, James

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.27 MB

2019

40

Interacting cells driving the evolution of multicellular life cycles

Gao, Yuanxiao, Traulsen, Arne, Pichugin, Yuriy, Komarova, Natalia L.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.56 MB

2019

41

Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEG

Schaworonkow, Natalie, Nikulin, Vadim V., Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.50 MB

2019

42

Modeling of the axon plasma membrane structure and its effects on protein diffusion

Zhang, Yihao, Tzingounis, Anastasios V., Lykotrafitis, George, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.35 MB

2019

43

Human representation of multimodal distributions as clusters of samples

Sun, Jingwei, Li, Jian, Zhang, Hang, Gershman, Samuel J.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.31 MB

2019

44

Macroscopic phase resetting-curves determine oscillatory coherence and signal transfer in inter-coupled neural circuits

Dumont, Grégory, Gutkin, Boris, Marinazzo, Daniele

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.94 MB

english, 2019

45

Pathway-specific protein domains are predictive for human diseases

Shim, Jung Eun, Kim, Ji Hyun, Shin, Junha, Lee, Ji Eun, Lee, Insuk, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.25 MB

english, 2019

46

A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data

Sharma, Ajeet K., Sormanni, Pietro, Ahmed, Nabeel, Ciryam, Prajwal, Friedrich, Ulrike A., Kramer, Günter, O’Brien, Edward P., Tuller, Tamir

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.53 MB

2019

47

Properties of cardiac conduction in a cell-based computational model

Jæger, Karoline Horgmo, Edwards, Andrew G., McCulloch, Andrew, Tveito, Aslak, Qu, Zhilin

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.57 MB

english, 2019

48

Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II

Pandini, Alessandro, Schulman, Howard, Khan, Shahid, de Groot, Bert L.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 6.00 MB

english, 2019

49

Dynamic balance between vesicle transport and microtubule growth enables neurite outgrowth

Yadaw, Arjun Singh, Siddiq, Mustafa M., Rabinovich, Vera, Tolentino, Rosa, Hansen, Jens, Iyengar, Ravi, Maini, Philip K.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.45 MB

english, 2019

50

Ten simple rules for carrying out and writing meta-analyses

Forero, Diego A., Lopez-Leon, Sandra, González-Giraldo, Yeimy, Bagos, Pantelis G., Markel, Scott

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 397 KB

english, 2019

51

Leveraging genetic interactions for adverse drug-drug interaction prediction

Qian, Sheng, Liang, Siqi, Yu, Haiyuan, Schlessinger, Avner

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.12 MB

2019

52

Comprehensively benchmarking applications for detecting copy number variation

Zhang, Le, Bai, Wanyu, Yuan, Na, Du, Zhenglin, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.31 MB

2019

53

Noise-precision tradeoff in predicting combinations of mutations and drugs

Tendler, Avichai, Zimmer, Anat, Mayo, Avi, Alon, Uri, Iyengar, Ravi

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.69 MB

english, 2019

54

Detecting interaction networks in the human microbiome with conditional Granger causality

Mainali, Kumar, Bewick, Sharon, Vecchio-Pagan, Briana, Karig, David, Fagan, William F., Langille, Morgan

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.70 MB

english, 2019

55

Epidemic prevalence information on social networks can mediate emergent collective outcomes in voluntary vaccine schemes

Sharma, Anupama, Menon, Shakti N., Sasidevan, V., Sinha, Sitabhra, Funk, Sebastian

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.97 MB

english, 2019

56

Properties of cardiac conduction in a cell-based computational model

Jæger, Karoline Horgmo, Edwards, Andrew G., McCulloch, Andrew, Tveito, Aslak, Qu, Zhilin

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.57 MB

2019

57

Amplitude cancellation influences the association between frequency components in the neural drive to muscle and the rectified EMG signal

Dideriksen, Jakob Lund, Farina, Dario, Haith, Adrian M

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.61 MB

english, 2019

58

Beyond Bouma's window: How to explain global aspects of crowding?

Doerig, Adrien, Bornet, Alban, Rosenholtz, Ruth, Francis, Gregory, Clarke, Aaron M., Herzog, Michael H., Einhäuser, Wolfgang

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.57 MB

english, 2019

59

State-aware detection of sensory stimuli in the cortex of the awake mouse

Sederberg, Audrey J., Pala, Aurélie, Zheng, He J. V., He, Biyu J., Stanley, Garrett B., Macke, Jakob H

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.39 MB

english, 2019

60

Noise-precision tradeoff in predicting combinations of mutations and drugs

Tendler, Avichai, Zimmer, Anat, Mayo, Avi, Alon, Uri, Iyengar, Ravi

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.69 MB

2019

61

Quasiperiodic rhythms of the inferior olive

Negrello, Mario, Warnaar, Pascal, Romano, Vincenzo, Owens, Cullen B., Lindeman, Sander, Iavarone, Elisabetta, Spanke, Jochen K., Bosman, Laurens W. J., De Zeeuw, Chris I., Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 6.68 MB

english, 2019

62

Parameter estimation and identifiability in a neural population model for electro-cortical activity

Hartoyo, Agus, Cadusch, Peter J., Liley, David T. J., Hicks, Damien G., Marinazzo, Daniele

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.37 MB

english, 2019

63

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

Iavarone, Elisabetta, Yi, Jane, Shi, Ying, Zandt, Bas-Jan, O’Reilly, Christian, Van Geit, Werner, Rössert, Christian, Markram, Henry, Hill, Sean L., Lytton, William W.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.63 MB

english, 2019

64

Correction: The role of the encapsulated cargo in microcompartment assembly

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 520 KB

english, 2019

65

The statistics of epidemic transitions

Drake, John M., Brett, Tobias S., Chen, Shiyang, Epureanu, Bogdan I., Ferrari, Matthew J., Marty, Éric, Miller, Paige B., O’Dea, Eamon B., O’Regan, Suzanne M., Park, Andrew W., Rohani, Pejman, Regoes,

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.13 MB

english, 2019

66

Uncovering functional signature in neural systems via random matrix theory

Almog, Assaf, Buijink, M. Renate, Roethler, Ori, Michel, Stephan, Meijer, Johanna H., Rohling, Jos H. T., Garlaschelli, Diego, Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.15 MB

english, 2019

67

Securing the future of research computing in the biosciences

Leng, Joanna, Shoura, Massa, McLeish, Tom C. B., Real, Alan N., Hardey, Mariann, McCafferty, James, Ranson, Neil A., Harris, Sarah A., Panchenko, Anna R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 530 KB

english, 2019

68

A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli

Grimbs, Anne, Klosik, David F., Bornholdt, Stefan, Hütt, Marc-Thorsten, Yang, Laurence

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.37 MB

english, 2019

69

Differential sustained and transient temporal processing across visual streams

Stigliani, Anthony, Jeska, Brianna, Grill-Spector, Kalanit, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.24 MB

english, 2019

70

Correction: Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter

Golan, Yarden, Alhadeff, Raphael, Glaser, Fabian, Ganoth, Assaf, Warshel, Arieh, Assaraf, Yehuda G.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 184 KB

english, 2019

71

Correction: How pupil responses track value-based decision-making during and after reinforcement learning

Van Slooten, Joanne C., Jahfari, Sara, Knapen, Tomas, Theeuwes, Jan

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 366 KB

english, 2019

72

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

Amini, Saman, Jacobsen, Annika, Ivanova, Olga, Lijnzaad, Philip, Heringa, Jaap, Holstege, Frank C. P., Feenstra, K. Anton, Kemmeren, Patrick, Slonim, Donna K.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.80 MB

english, 2019

73

Correction: Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 306 KB

english, 2019

74

Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability

Boza, Gergely, Worsley, Sarah F., Yu, Douglas W., Scheuring, István, Grilli, Jacopo

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 1.99 MB

english, 2019

75

Detecting interaction networks in the human microbiome with conditional Granger causality

Mainali, Kumar, Bewick, Sharon, Vecchio-Pagan, Briana, Karig, David, Fagan, William F., Langille, Morgan

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.70 MB

2019

76

Quasiperiodic rhythms of the inferior olive

Negrello, Mario, Warnaar, Pascal, Romano, Vincenzo, Owens, Cullen B., Lindeman, Sander, Iavarone, Elisabetta, Spanke, Jochen K., Bosman, Laurens W. J., De Zeeuw, Chris I., Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 6.68 MB

2019

77

Parameter estimation and identifiability in a neural population model for electro-cortical activity

Hartoyo, Agus, Cadusch, Peter J., Liley, David T. J., Hicks, Damien G., Marinazzo, Daniele

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.37 MB

2019

78

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

Iavarone, Elisabetta, Yi, Jane, Shi, Ying, Zandt, Bas-Jan, O’Reilly, Christian, Van Geit, Werner, Rössert, Christian, Markram, Henry, Hill, Sean L., Lytton, William W.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.63 MB

2019

79

Correction: The role of the encapsulated cargo in microcompartment assembly

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 520 KB

2019

80

The statistics of epidemic transitions

Drake, John M., Brett, Tobias S., Chen, Shiyang, Epureanu, Bogdan I., Ferrari, Matthew J., Marty, Éric, Miller, Paige B., O’Dea, Eamon B., O’Regan, Suzanne M., Park, Andrew W., Rohani, Pejman, Regoes,

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.13 MB

2019

81

Uncovering functional signature in neural systems via random matrix theory

Almog, Assaf, Buijink, M. Renate, Roethler, Ori, Michel, Stephan, Meijer, Johanna H., Rohling, Jos H. T., Garlaschelli, Diego, Battaglia, Francesco P.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 3.15 MB

2019

82

Securing the future of research computing in the biosciences

Leng, Joanna, Shoura, Massa, McLeish, Tom C. B., Real, Alan N., Hardey, Mariann, McCafferty, James, Ranson, Neil A., Harris, Sarah A., Panchenko, Anna R.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 530 KB

2019

83

A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli

Grimbs, Anne, Klosik, David F., Bornholdt, Stefan, Hütt, Marc-Thorsten, Yang, Laurence

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 4.37 MB

2019

84

Differential sustained and transient temporal processing across visual streams

Stigliani, Anthony, Jeska, Brianna, Grill-Spector, Kalanit, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.24 MB

2019

85

Correction: Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter

Golan, Yarden, Alhadeff, Raphael, Glaser, Fabian, Ganoth, Assaf, Warshel, Arieh, Assaraf, Yehuda G.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 184 KB

2019

86

Correction: How pupil responses track value-based decision-making during and after reinforcement learning

Van Slooten, Joanne C., Jahfari, Sara, Knapen, Tomas, Theeuwes, Jan

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 366 KB

2019

87

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

Amini, Saman, Jacobsen, Annika, Ivanova, Olga, Lijnzaad, Philip, Heringa, Jaap, Holstege, Frank C. P., Feenstra, K. Anton, Kemmeren, Patrick, Slonim, Donna K.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 1.80 MB

2019

88

Correction: Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 306 KB

2019

89

Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability

Boza, Gergely, Worsley, Sarah F., Yu, Douglas W., Scheuring, István, Grilli, Jacopo

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 1.99 MB

2019

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