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Volume 15; Issue 7
Main
PLoS Computational Biology
Volume 15; Issue 7
PLoS Computational Biology
Volume 15; Issue 7
1
Molecular noise of innate immunity shapes bacteria-phage ecologies
Ruess, Jakob
,
Pleška, Maroš
,
Guet, Cǎlin C.
,
Tkačik, Gašper
,
Igoshin, Oleg A
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.45 MB
Your tags:
english, 2019
2
Cross-species functional modules link proteostasis to human normal aging
Komljenovic, Andrea
,
Li, Hao
,
Sorrentino, Vincenzo
,
Kutalik, Zoltán
,
Auwerx, Johan
,
Robinson-Rechavi, Marc
,
Guigo, Roderic
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.75 MB
Your tags:
english, 2019
3
DART-ID increases single-cell proteome coverage
Chen, Albert Tian
,
Franks, Alexander
,
Slavov, Nikolai
,
Cox, Jürgen
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.97 MB
Your tags:
english, 2019
4
Disease gene prediction for molecularly uncharacterized diseases
Cáceres, Juan J.
,
Paccanaro, Alberto
,
Ofran, Yanay
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.00 MB
Your tags:
english, 2019
5
With an eye on uncertainty: Modelling pupillary responses to environmental volatility
Vincent, Peter
,
Parr, Thomas
,
Benrimoh, David
,
Friston, Karl J
,
Haith, Adrian M
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.23 MB
Your tags:
english, 2019
6
Human online adaptation to changes in prior probability
Norton, Elyse H.
,
Acerbi, Luigi
,
Ma, Wei Ji
,
Landy, Michael S.
,
Beierholm, Ulrik R.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.74 MB
Your tags:
english, 2019
7
Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling
Chandrasekaran, Aravind
,
Upadhyaya, Arpita
,
Papoian, Garegin A.
,
Cui, Qiang
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.58 MB
Your tags:
english, 2019
8
ACAP1 assembles into an unusual protein lattice for membrane deformation through multiple stages
Chan, Chun
,
Pang, Xiaoyun
,
Zhang, Yan
,
Niu, Tongxin
,
Yang, Shengjiang
,
Zhao, Daohui
,
Li, Jian
,
Lu, Lanyuan
,
Hsu, Victor W.
,
Zhou, Jian
,
Sun, Fei
,
Fan, Jun
,
Haliloglu, Turkan
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 17.28 MB
Your tags:
english, 2019
9
Machine and deep learning meet genome-scale metabolic modeling
Zampieri, Guido
,
Vijayakumar, Supreeta
,
Yaneske, Elisabeth
,
Angione, Claudio
,
Nielsen, Jens
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.24 MB
Your tags:
english, 2019
10
Modeling the daily rhythm of human pain processing in the dorsal horn
Crodelle, Jennifer
,
Piltz, Sofia H.
,
Hagenauer, Megan Hastings
,
Booth, Victoria
,
Bose, Amitabha
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.46 MB
Your tags:
english, 2019
11
Information-theoretic analysis of multivariate single-cell signaling responses
Jetka, Tomasz
,
Nienałtowski, Karol
,
Winarski, Tomasz
,
Błoński, Sławomir
,
Komorowski, Michał
,
Rao, Christopher V.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.33 MB
Your tags:
english, 2019
12
Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks
Breitenbach, Tim
,
Liang, Chunguang
,
Beyersdorf, Niklas
,
Dandekar, Thomas
,
Papin, Jason A.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.52 MB
Your tags:
english, 2019
13
Large vessels as a tree of transmission lines incorporated in the CircAdapt whole-heart model: A computational tool to examine heart-vessel interaction
Heusinkveld, Maarten H. G.
,
Huberts, Wouter
,
Lumens, Joost
,
Arts, Theo
,
Delhaas, Tammo
,
Reesink, Koen D.
,
Marsden, Alison
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.17 MB
Your tags:
english, 2019
14
Computational design of improved standardized chemotherapy protocols for grade II oligodendrogliomas
Pérez-García, Víctor M.
,
Ayala-Hernández, Luis E.
,
Belmonte-Beitia, Juan
,
Schucht, Philippe
,
Murek, Michael
,
Raabe, Andreas
,
Sepúlveda, Juan
,
Gallo, James
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.03 MB
Your tags:
english, 2019
15
Foraging as an evidence accumulation process
Davidson, Jacob D.
,
El Hady, Ahmed
,
Flack, Jessica C.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 6.86 MB
Your tags:
english, 2019
16
Correction: Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks
Vestergaard, Christian L.
,
Génois, Mathieu
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.27 MB
Your tags:
english, 2019
17
Correction: From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm
Tiedemann, Hendrik B.
,
Schneltzer, Elida
,
Zeiser, Stefan
,
Hoesel, Bastian
,
Beckers, Johannes
,
Przemeck, Gerhard K. H.
,
de Angelis, Martin Hrabě
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 252 KB
Your tags:
english, 2019
18
Correction: Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources
Zarai, Yoram
,
Tuller, Tamir
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 184 KB
Your tags:
english, 2019
19
Modelling the mechanics of exploration in larval Drosophila
Loveless, Jane
,
Lagogiannis, Konstantinos
,
Webb, Barbara
,
Ayers, Joseph
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.91 MB
Your tags:
english, 2019
20
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks
Rule, Adam
,
Birmingham, Amanda
,
Zuniga, Cristal
,
Altintas, Ilkay
,
Huang, Shih-Cheng
,
Knight, Rob
,
Moshiri, Niema
,
Nguyen, Mai H.
,
Rosenthal, Sara Brin
,
Pérez, Fernando
,
Rose, Peter W.
,
Lewitter, Fran
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 420 KB
Your tags:
english, 2019
21
Think: Theory for Africa
Currin, Christopher B.
,
Khoza, Phumlani N.
,
Antrobus, Alexander D.
,
Latham, Peter E.
,
Vogels, Tim P.
,
Raimondo, Joseph V.
,
Isik, Leyla
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 756 KB
Your tags:
english, 2019
22
Identifying determinants of persistent MRSA bacteremia using mathematical modeling
Mikkaichi, Tsuyoshi
,
Yeaman, Michael R.
,
Hoffmann, Alexander
,
Pitzer, Virginia E.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.85 MB
Your tags:
english, 2019
23
Ten simple rules for giving an effective academic job talk
Sura, Shayna A.
,
Smith, Lauren L.
,
Ambrose, Monique R.
,
Amorim, C. Eduardo Guerra
,
Beichman, Annabel C.
,
Gomez, Ana C. R.
,
Juhn, Mark
,
Kandlikar, Gaurav S.
,
Miller, Julie S.
,
Mooney, Jazlyn
,
Mummah, R
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 411 KB
Your tags:
english, 2019
24
Sensorimotor maps can be dynamically calibrated using an adaptive-filter model of the cerebellum
Wilson, Emma D.
,
Anderson, Sean R.
,
Dean, Paul
,
Porrill, John
,
Diedrichsen, Jörn
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.25 MB
Your tags:
english, 2019
25
Heterogeneous susceptibility to rotavirus infection and gastroenteritis in two birth cohort studies: Parameter estimation and epidemiological implications
Lewnard, Joseph A.
,
Lopman, Benjamin A.
,
Parashar, Umesh D.
,
Bennett, Aisleen
,
Bar-Zeev, Naor
,
Cunliffe, Nigel A.
,
Samuel, Prasanna
,
Guerrero, M. Lourdes
,
Ruiz-Palacios, Guillermo
,
Kang, Gagandeep
,
Pi
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.60 MB
Your tags:
english, 2019
26
A case study in the functional consequences of scaling the sizes of realistic cortical models
Joglekar, Madhura R.
,
Chariker, Logan
,
Shapley, Robert
,
Young, Lai-Sang
,
Tao, Louis
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.25 MB
Your tags:
english, 2019
27
Depressive symptoms are associated with blunted reward learning in social contexts
Safra, Lou
,
Chevallier, Coralie
,
Palminteri, Stefano
,
Haith, Adrian M.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.95 MB
Your tags:
english, 2019
28
Robustness of respiratory rhythm generation across dynamic regimes
Rubin, Jonathan E.
,
Smith, Jeffrey C.
,
Cymbalyuk, Gennady
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.37 MB
Your tags:
english, 2019
29
Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data
Chkhaidze, Ketevan
,
Heide, Timon
,
Werner, Benjamin
,
Williams, Marc J.
,
Huang, Weini
,
Caravagna, Giulio
,
Graham, Trevor A.
,
Sottoriva, Andrea
,
Reiter, Johannes
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.14 MB
Your tags:
english, 2019
30
Identifying important parameters in the inflammatory process with a mathematical model of immune cell influx and macrophage polarization
Torres, Marcella
,
Wang, Jing
,
Yannie, Paul J.
,
Ghosh, Shobha
,
Segal, Rebecca A.
,
Reynolds, Angela M.
,
Adler, Frederick R.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.26 MB
Your tags:
english, 2019
31
A computational framework for the morpho-elastic development of molluskan shells by surface and volume growth
Rudraraju, Shiva
,
Moulton, Derek E.
,
Chirat, Régis
,
Goriely, Alain
,
Garikipati, Krishna
,
Nie, Qing
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 27.16 MB
Your tags:
english, 2019
32
Human online adaptation to changes in prior probability
Norton, Elyse H.
,
Acerbi, Luigi
,
Ma, Wei Ji
,
Landy, Michael S.
,
Beierholm, Ulrik R.
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 3.74 MB
Your tags:
2019
33
Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling
Chandrasekaran, Aravind
,
Upadhyaya, Arpita
,
Papoian, Garegin A.
,
Cui, Qiang
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.58 MB
Your tags:
2019
34
The impact of DNA methylation on the cancer proteome
Magzoub, Majed Mohamed
,
Prunello, Marcos
,
Brennan, Kevin
,
Gevaert, Olivier
,
Leslie, Christina S.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.96 MB
Your tags:
english, 2019
35
A model for the origin and development of visual orientation selectivity
Nguyen, Gratia
,
Freeman, Alan W.
,
van den Berg, Ronald
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.43 MB
Your tags:
english, 2019
36
Large vessels as a tree of transmission lines incorporated in the CircAdapt whole-heart model: A computational tool to examine heart-vessel interaction
Heusinkveld, Maarten H. G.
,
Huberts, Wouter
,
Lumens, Joost
,
Arts, Theo
,
Delhaas, Tammo
,
Reesink, Koen D.
,
Marsden, Alison
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 5.17 MB
Your tags:
2019
37
Computational design of improved standardized chemotherapy protocols for grade II oligodendrogliomas
Pérez-García, Víctor M.
,
Ayala-Hernández, Luis E.
,
Belmonte-Beitia, Juan
,
Schucht, Philippe
,
Murek, Michael
,
Raabe, Andreas
,
Sepúlveda, Juan
,
Gallo, James
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.03 MB
Your tags:
2019
38
Biophysics and population size constrains speciation in an evolutionary model of developmental system drift
Khatri, Bhavin S.
,
Goldstein, Richard A.
,
Mustonen, Ville
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.13 MB
Your tags:
english, 2019
39
Predictions of time to HIV viral rebound following ART suspension that incorporate personal biomarkers
Conway, Jessica M.
,
Perelson, Alan S.
,
Li, Jonathan Z.
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 3.15 MB
Your tags:
2019
40
The impact of DNA methylation on the cancer proteome
Magzoub, Majed Mohamed
,
Prunello, Marcos
,
Brennan, Kevin
,
Gevaert, Olivier
,
Leslie, Christina S.
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.96 MB
Your tags:
2019
41
A model for the origin and development of visual orientation selectivity
Nguyen, Gratia
,
Freeman, Alan W.
,
van den Berg, Ronald
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 8.43 MB
Your tags:
2019
42
The invasion of de-differentiating cancer cells into hierarchical tissues
Zhou, Da
,
Luo, Yue
,
Dingli, David
,
Traulsen, Arne
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.81 MB
Your tags:
english, 2019
43
Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism
Wessel, Jan R.
,
Huber, David E.
,
Marinazzo, Daniele
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.45 MB
Your tags:
english, 2019
44
Frontal cortex tracks surprise separately for different sensory modalities but engages a common inhibitory control mechanism
Wessel, Jan R.
,
Huber, David E.
,
Marinazzo, Daniele
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.45 MB
Your tags:
2019
45
Primacy coding facilitates effective odor discrimination when receptor sensitivities are tuned
Zwicker, David
,
Latham, Peter E.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2019
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