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Volume 15; Issue 8
Main
PLoS Computational Biology
Volume 15; Issue 8
PLoS Computational Biology
Volume 15; Issue 8
1
Every which way? On predicting tumor evolution using cancer progression models
Diaz-Uriarte, Ramon
,
Vasallo, Claudia
,
Traulsen, Arne
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.37 MB
Your tags:
english, 2019
2
Efficiency of protein synthesis inhibition depends on tRNA and codon compositions
Rudorf, Sophia
,
Chen, Shi-Jie
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.87 MB
Your tags:
english, 2019
3
Predicting kinase inhibitors using bioactivity matrix derived informer sets
Zhang, Huikun
,
Ericksen, Spencer S.
,
Lee, Ching-pei
,
Ananiev, Gene E.
,
Wlodarchak, Nathan
,
Yu, Peng
,
Mitchell, Julie C.
,
Gitter, Anthony
,
Wright, Stephen J.
,
Hoffmann, F. Michael
,
Wildman, Scott A.
,
N
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.35 MB
Your tags:
english, 2019
4
Connecting signaling and metabolic pathways in EGF receptor-mediated oncogenesis of glioblastoma
Bag, Arup K.
,
Mandloi, Sapan
,
Jarmalavicius, Saulius
,
Mondal, Susmita
,
Kumar, Krishna
,
Mandal, Chhabinath
,
Walden, Peter
,
Chakrabarti, Saikat
,
Mandal, Chitra
,
Schilling, Marcel
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 6.27 MB
Your tags:
english, 2019
5
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration
Yang, Jing
,
Müller, Nicola F.
,
Bouckaert, Remco
,
Xu, Bing
,
Drummond, Alexei J.
,
Cobey, Sarah
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.52 MB
Your tags:
english, 2019
6
Motion, fixation probability and the choice of an evolutionary process
Herrerías-Azcué, Francisco
,
Pérez-Muñuzuri, Vicente
,
Galla, Tobias
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.02 MB
Your tags:
english, 2019
7
Arrhythmia mechanisms and spontaneous calcium release: Bi-directional coupling between re-entrant and focal excitation
Colman, Michael A.
,
Boyle, Patrick
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 7.35 MB
Your tags:
english, 2019
8
A generative learning model for saccade adaptation
Cassanello, Carlos R.
,
Ostendorf, Florian
,
Rolfs, Martin
,
Einhäuser, Wolfgang
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 11.70 MB
Your tags:
english, 2019
9
Directed migration shapes cooperation in spatial ecological public goods games
Funk, Felix
,
Hauert, Christoph
,
Celani, Antonio
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.47 MB
Your tags:
english, 2019
10
Reappraising the utility of Google Flu Trends
Kandula, Sasikiran
,
Shaman, Jeffrey
,
Segata, Nicola
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.83 MB
Your tags:
english, 2019
11
Machine learning-based microarray analyses indicate low-expression genes might collectively influence PAH disease
Cui, Song
,
Wu, Qiang
,
West, James
,
Bai, Jiangping
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 7.63 MB
Your tags:
english, 2019
12
Pulse transit time estimation of aortic pulse wave velocity and blood pressure using machine learning and simulated training data
Huttunen, Janne M. J.
,
Kärkkäinen, Leo
,
Lindholm, Harri
,
Beard, Daniel A
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.01 MB
Your tags:
english, 2019
13
TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements
Navarro, Fabio CP
,
Hoops, Jacob
,
Bellfy, Lauren
,
Cerveira, Eliza
,
Zhu, Qihui
,
Zhang, Chengsheng
,
Lee, Charles
,
Gerstein, Mark B.
,
Rigoutsos, Isidore
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.12 MB
Your tags:
english, 2019
14
Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets
Hay, James A.
,
Laurie, Karen
,
White, Michael
,
Riley, Steven
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.87 MB
Your tags:
english, 2019
15
A mathematical model of calcium dynamics: Obesity and mitochondria-associated ER membranes
Han, Jung Min
,
Periwal, Vipul
,
Sneyd, James
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.55 MB
Your tags:
english, 2019
16
A computational model for gonadotropin releasing cells in the teleost fish medaka
Halnes, Geir
,
Tennøe, Simen
,
Haug, Trude M.
,
Einevoll, Gaute T.
,
Weltzien, Finn-Arne
,
Hodne, Kjetil
,
MacGregor, Duncan J
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 7.55 MB
Your tags:
english, 2019
17
ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins
Tagore, Somnath
,
Gorohovski, Alessandro
,
Jensen, Lars Juhl
,
Frenkel-Morgenstern, Milana
,
Dunbrack, Roland L.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.96 MB
Your tags:
english, 2019
18
Transient crosslinking kinetics optimize gene cluster interactions
Walker, Benjamin
,
Taylor, Dane
,
Lawrimore, Josh
,
Hult, Caitlin
,
Adalsteinsson, David
,
Bloom, Kerry
,
Forest, M. Gregory
,
Morozov, Alexandre V.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.26 MB
Your tags:
english, 2019
19
Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI
Koppe, Georgia
,
Toutounji, Hazem
,
Kirsch, Peter
,
Lis, Stefanie
,
Durstewitz, Daniel
,
Isik, Leyla
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 7.22 MB
Your tags:
english, 2019
20
Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces
Warszawski, Shira
,
Katz, Aliza Borenstein
,
Lipsh, Rosalie
,
Khmelnitsky, Lev
,
Ben Nissan, Gili
,
Javitt, Gabriel
,
Dym, Orly
,
Unger, Tamar
,
Knop, Orli
,
Albeck, Shira
,
Diskin, Ron
,
Fass, Deborah
,
Sharon,
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.98 MB
Your tags:
english, 2019
21
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences
Deutekom, Eva S.
,
Vosseberg, Julian
,
van Dam, Teunis J. P.
,
Snel, Berend
,
Ouzounis, Christos A.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.19 MB
Your tags:
english, 2019
22
A benchmark of computational CRISPR-Cas9 guide design methods
Bradford, Jacob
,
Perrin, Dimitri
,
Wang, Edwin
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 8.98 MB
Your tags:
english, 2019
23
Mechanical properties of tubulin intra- and inter-dimer interfaces and their implications for microtubule dynamic instability
Fedorov, Vladimir A.
,
Orekhov, Philipp S.
,
Kholina, Ekaterina G.
,
Zhmurov, Artem A.
,
Ataullakhanov, Fazoil I.
,
Kovalenko, Ilya B.
,
Gudimchuk, Nikita B.
,
Csikász-Nagy, Attila
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 12.62 MB
Your tags:
english, 2019
24
PanoView: An iterative clustering method for single-cell RNA sequencing data
Hu, Ming-Wen
,
Kim, Dong Won
,
Liu, Sheng
,
Zack, Donald J.
,
Blackshaw, Seth
,
Qian, Jiang
,
Nie, Qing
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.39 MB
Your tags:
english, 2019
25
Variation in plastic responses to light results from selection in different competitive environments—A game theoretical approach using virtual plants
Bongers, Franca J.
,
Douma, Jacob C.
,
Iwasa, Yoh
,
Pierik, Ronald
,
Evers, Jochem B.
,
Anten, Niels P. R.
,
Gilman, Tucker
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.52 MB
Your tags:
english, 2019
26
Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA
Parida, Laxmi
,
Haferlach, Claudia
,
Rhrissorrakrai, Kahn
,
Utro, Filippo
,
Levovitz, Chaya
,
Kern, Wolfgang
,
Nadarajah, Niroshan
,
Twardziok, Sven
,
Hutter, Stephan
,
Meggendorfer, Manja
,
Walter, Wencke
,
Bae
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.95 MB
Your tags:
english, 2019
27
Red blood cells stabilize flow in brain microvascular networks
Schmid, Franca
,
Barrett, Matthew J. P.
,
Obrist, Dominik
,
Weber, Bruno
,
Jenny, Patrick
,
Kleinfeld, David
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.87 MB
Your tags:
english, 2019
28
Non-trophic interactions strengthen the diversity—functioning relationship in an ecological bioenergetic network model
Miele, Vincent
,
Guill, Christian
,
Ramos-Jiliberto, Rodrigo
,
Kéfi, Sonia
,
Grilli, Jacopo
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.63 MB
Your tags:
english, 2019
29
Fast uncertainty quantification for dynamic flux balance analysis using non-smooth polynomial chaos expansions
Paulson, Joel A.
,
Martin-Casas, Marc
,
Mesbah, Ali
,
Mendes, Pedro
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.51 MB
Your tags:
english, 2019
30
Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical models
Pham, Thi Mui
,
Kretzschmar, Mirjam
,
Bertrand, Xavier
,
Bootsma, Martin
,
Kouyos, Roger Dimitri
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.17 MB
Your tags:
english, 2019
31
Colony entropy—Allocation of goods in ant colonies
Greenwald, Efrat
,
Eckmann, Jean-Pierre
,
Feinerman, Ofer
,
Grilli, Jacopo
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.64 MB
Your tags:
english, 2019
32
Bayesian hypothesis testing and experimental design for two-photon imaging data
Rogerson, Luke E.
,
Zhao, Zhijian
,
Franke, Katrin
,
Euler, Thomas
,
Berens, Philipp
,
Park, Il Memming
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.22 MB
Your tags:
english, 2019
33
Energy-efficient information transfer at thalamocortical synapses
Harris, Julia Jade
,
Engl, Elisabeth
,
Attwell, David
,
Jolivet, Renaud Blaise
,
Steuber, Volker
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.37 MB
Your tags:
english, 2019
34
On the optimal design of metabolic RNA labeling experiments
Uvarovskii, Alexey
,
Naarmann-de Vries, Isabel S.
,
Dieterich, Christoph
,
Erhard, Florian
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.81 MB
Your tags:
english, 2019
35
Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations
Doekes, Hilje M.
,
de Boer, Rob J.
,
Hermsen, Rutger
,
Schlueter, Jonas
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 5.21 MB
Your tags:
english, 2019
36
Predicting the effects of deep brain stimulation using a reduced coupled oscillator model
Weerasinghe, Gihan
,
Duchet, Benoit
,
Cagnan, Hayriye
,
Brown, Peter
,
Bick, Christian
,
Bogacz, Rafal
,
Rubin, Jonathan
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.72 MB
Your tags:
english, 2019
37
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Ghurye, Jay
,
Rhie, Arang
,
Walenz, Brian P.
,
Schmitt, Anthony
,
Selvaraj, Siddarth
,
Pop, Mihai
,
Phillippy, Adam M.
,
Koren, Sergey
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.94 MB
Your tags:
english, 2019
38
Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels
Scire, Jérémie
,
Hozé, Nathanaël
,
Uecker, Hildegard
,
Cohen, Ted
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 2.76 MB
Your tags:
english, 2019
39
Predicting the effects of deep brain stimulation using a reduced coupled oscillator model
Weerasinghe, Gihan
,
Duchet, Benoit
,
Cagnan, Hayriye
,
Brown, Peter
,
Bick, Christian
,
Bogacz, Rafal
,
Rubin, Jonathan
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.72 MB
Your tags:
2019
40
Network analyses to quantify effects of host movement in multilevel disease transmission models using foot and mouth disease in Cameroon as a case study
Pomeroy, Laura W.
,
Kim, Hyeyoung
,
Xiao, Ningchuan
,
Moritz, Mark
,
Garabed, Rebecca
,
Komarova, Natalia L.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 1.73 MB
Your tags:
english, 2019
41
Recombination and mutational robustness in neutral fitness landscapes
Klug, Alexander
,
Park, Su-Chan
,
Krug, Joachim
,
Payne, Joshua
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.75 MB
Your tags:
english, 2019
42
Anatomically accurate model of EMG during index finger flexion and abduction derived from diffusion tensor imaging
Pereira Botelho, Diego
,
Curran, Kathleen
,
Lowery, Madeleine M.
,
Papin, Jason A.
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 3.51 MB
Your tags:
english, 2019
43
Anatomically accurate model of EMG during index finger flexion and abduction derived from diffusion tensor imaging
Pereira Botelho, Diego
,
Curran, Kathleen
,
Lowery, Madeleine M.
,
Papin, Jason A.
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 3.51 MB
Your tags:
2019
44
The formation of preference in risky choice
Glickman, Moshe
,
Sharoni, Orian
,
Levy, Dino J.
,
Niebur, Ernst
,
Stuphorn, Veit
,
Usher, Marius
,
O'Reilly, Jill
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 2.09 MB
Your tags:
2019
45
Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics
Phillips, Ryan S.
,
Rubin, Jonathan E.
,
Morrison, Abigail
Journal:
PLoS Computational Biology
Year:
2019
Language:
english
File:
PDF, 4.38 MB
Your tags:
english, 2019
46
Gaussian curvature and the budding kinetics of enveloped viruses
Dharmavaram, Sanjay
,
She, Selene Baochen
,
Lázaro, Guillermo
,
Hagan, Michael Francis
,
Bruinsma, Robijn
,
Harries, Daniel
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 1.42 MB
Your tags:
2019
47
Twelve quick tips for designing sound dynamical models for bioprocesses
Mairet, Francis
,
Bernard, Olivier
,
Ouellette, Francis
Journal:
PLoS Computational Biology
Year:
2019
File:
PDF, 854 KB
Your tags:
2019
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