Volume 3; Issue 3

PLoS Computational Biology

Volume 3; Issue 3

1

Ten Simple Rules for a Successful Collaboration

Vicens, Quentin, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 54 KB

english, 2007

2

Characterization and Identification of MicroRNA Core Promoters in Four Model Species

Zhou, Xuefeng, Ruan, Jianhua, Wang, Guandong, Zhang, Weixiong

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 508 KB

english, 2007

3

DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies

Mahony, Shaun, Auron, Philip E., Benos, Panayiotis V.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.05 MB

english, 2007

4

Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch

Kim, Keun-Young, Wang, Jin

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.63 MB

english, 2007

5

Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases

Shoemaker, Benjamin A., Panchenko, Anna R.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

6

The (In)dependence of Alternative Splicing and Gene Duplication

Talavera, David, Vogel, Christine, Orozco, Modesto, Teichmann, Sarah A., de la Cruz, Xavier

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 787 KB

english, 2007

7

A Mathematical Model for Neutrophil Gradient Sensing and Polarization

Onsum, Matthew, Rao, Christopher V.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 708 KB

english, 2007

8

A Look Inside HIV Resistance through Retroviral Protease Interaction Maps

Kontijevskis, Aleksejs, Prusis, Peteris, Petrovska, Ramona, Yahorava, Sviatlana, Mutulis, Felikss, Mutule, Ilze, Komorowski, Jan, Wikberg, Jarl E. S.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.40 MB

english, 2007

9

(A)Symmetric Stem Cell Replication and Cancer

Dingli, David, Traulsen, Arne, Michor, Franziska

Journal:

PLoS Computational Biology

Year:

2007

File:

PDF, 22 KB

2007

10

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage

Sander, Oliver, Sing, Tobias, Sommer, Ingolf, Low, Andrew J., Cheung, Peter K., Harrigan, P. Richard, Lengauer, Thomas, Domingues, Francisco S.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 980 KB

english, 2007

11

PPARα siRNA–Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy

Dai, Xudong, Souza, Angus T. De, Dai, Hongyue, Lewis, David L., Lee, Chang-kyu, Spencer, Andy G., Herweijer, Hans, Hagstrom, Jim E., Linsley, Peter S., Bassett, Douglas E., Ulrich, Roger G., He, Yudon

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

12

Spatial Acuity and Prey Detection in Weakly Electric Fish

Babineau, David, Lewis, John E., Longtin, André

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 566 KB

english, 2007

13

Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation

Ciliberto, Andrea, Capuani, Fabrizio, Tyson, John J.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 869 KB

english, 2007

14

Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction

Bernal, Axel, Crammer, Koby, Hatzigeorgiou, Artemis, Pereira, Fernando

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 717 KB

english, 2007

15

Dynamic Simulations on the Arachidonic Acid Metabolic Network

Yang, Kun, Ma, Wenzhe, Liang, Huanhuan, Ouyang, Qi, Tang, Chao, Lai, Luhua

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 440 KB

english, 2007

16

Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

Nawrocki, Eric P., Eddy, Sean R.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 692 KB

english, 2007

17

Posttranscriptional Expression Regulation: What Determines Translation Rates?

Brockmann, Regina, Beyer, Andreas, Heinisch, Jürgen J., Wilhelm, Thomas

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 247 KB

english, 2007

18

Discovering Motifs in Ranked Lists of DNA Sequences

Eden, Eran, Lipson, Doron, Yogev, Sivan, Yakhini, Zohar

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 850 KB

english, 2007

19

The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns

Nicolas, Pierre, Kim, Kyoung-Mee, Shibata, Darryl, Tavaré, Simon

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

20

UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model

Krishna, Sandeep, Maslov, Sergei, Sneppen, Kim

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 917 KB

english, 2007

21

Measures of Clade Confidence Do Not Correlate with Accuracy of Phylogenetic Trees

Hall, Barry G., Salipante, Stephen J.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 26 KB

english, 2007

22

Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins

Berezovsky, Igor N., Zeldovich, Konstantin B., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 718 KB

english, 2007