Volume 3; Issue 8

PLoS Computational Biology

Volume 3; Issue 8

1

Helicobacter pylori Evolution: Lineage- Specific Adaptations in Homologs of Eukaryotic Sel1-Like Genes

Ogura, Masako, Perez, J. Christian, Mittl, Peer R. E., Lee, Hae-Kyung, Dailide, Geidrius, Tan, Shumin, Ito, Yoshiyuki, Secka, Ousman, Dailidiene, Daiva, Putty, Kalyani, Berg, Douglas E., Kalia, Awdhes

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.41 MB

english, 2007

2

Automated Protein Subfamily Identification and Classification

Brown, Duncan P., Krishnamurthy, Nandini, Sjölander, Kimmen

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 586 KB

english, 2007

3

An Information-Theoretic Characterization of the Optimal Gradient Sensing Response of Cells

Andrews, Burton W., Iglesias, Pablo A.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 642 KB

english, 2007

4

Recent Evolutions of Multiple Sequence Alignment Algorithms

Notredame, Cédric

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 434 KB

english, 2007

5

Pathway Switching Explains the Sharp Response Characteristic of Hypoxia Response Network

Yu, Yihai, Wang, Guanyu, Simha, Rahul, Peng, Weiqun, Turano, Frank, Zeng, Chen

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 891 KB

english, 2007

6

Automated Discovery of Functional Generality of Human Gene Expression Programs

Gerber, Georg K., Dowell, Robin D., Jaakkola, Tommi S., Gifford, David K.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.18 MB

english, 2007

7

Inferring Function Using Patterns of Native Disorder in Proteins

Lobley, Anna, Swindells, Mark B., Orengo, Christine A., Jones, David T.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.15 MB

english, 2007

8

PERIOD–TIMELESS Interval Timer May Require an Additional Feedback Loop

Kuczenski, Robert S., Hong, Kevin C., García-Ojalvo, Jordi, Lee, Kelvin H.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 707 KB

english, 2007

9

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis

Teschendorff, Andrew E., Journée, Michel, Absil, Pierre A., Sepulchre, Rodolphe, Caldas, Carlos

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1000 KB

english, 2007

10

Buffering Mechanisms in Aging: A Systems Approach Toward Uncovering the Genetic Component of Aging

Bergman, Aviv, Atzmon, Gil, Ye, Kenny, MacCarthy, Thomas, Barzilai, Nir

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 419 KB

english, 2007

11

Functional Representation of Enzymes by Specific Peptides

Kunik, Vered, Meroz, Yasmine, Solan, Zach, Sandbank, Ben, Weingart, Uri, Ruppin, Eytan, Horn, David

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 543 KB

english, 2007

12

Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons

Golomb, David, Donner, Karnit, Shacham, Liron, Shlosberg, Dan, Amitai, Yael, Hansel, David

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.26 MB

english, 2007

13

SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework

Meyer, Irmtraud M., Miklós, István

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.24 MB

english, 2007

14

Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains

Costes, Sylvain V., Ponomarev, Artem, Chen, James L., Nguyen, David, Cucinotta, Francis A., Barcellos-Hoff, Mary Helen

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 981 KB

english, 2007

15

On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A

Kryazhimskiy, Sergey, Dieckmann, Ulf, Levin, Simon A., Dushoff, Jonathan

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 620 KB

english, 2007

16

A Logical Model Provides Insights into T Cell Receptor Signaling

Saez-Rodriguez, Julio, Simeoni, Luca, Lindquist, Jonathan A., Hemenway, Rebecca, Bommhardt, Ursula, Arndt, Boerge, Haus, Utz-Uwe, Weismantel, Robert, Gilles, Ernst D., Klamt, Steffen, Schraven, Burkha

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 751 KB

english, 2007

17

Distributed Representations Accelerate Evolution of Adaptive Behaviours

Stone, James V.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 399 KB

english, 2007

18

Design of Multi-Specificity in Protein Interfaces

Humphris, Elisabeth L., Kortemme, Tanja

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.55 MB

english, 2007

19

Perceptual Learning via Modification of Cortical Top-Down Signals

Schäfer, Roland, Vasilaki, Eleni, Senn, Walter

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 772 KB

english, 2007

20

Slowness and Sparseness Lead to Place, Head-Direction, and Spatial-View Cells

Franzius, Mathias, Sprekeler, Henning, Wiskott, Laurenz

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.03 MB

english, 2007

21

A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm

Gurkiewicz, Meron, Korngreen, Alon

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.13 MB

english, 2007