Volume 4; Issue 4

PLoS Computational Biology

Volume 4; Issue 4

1

A Generalized Allosteric Mechanism for cis-Regulated Cyclic Nucleotide Binding Domains

Kornev, Alexandr P., Taylor, Susan S., Ten Eyck, Lynn F., Ranganathan, Rama

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 619 KB

english, 2008

2

Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer

Bashir, Ali, Volik, Stanislav, Collins, Colin, Bafna, Vineet, Raphael, Benjamin J., Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 498 KB

english, 2008

3

Biosynthetic Potentials of Metabolites and Their Hierarchical Organization

Matthäus, Franziska, Salazar, Carlos, Ebenhöh, Oliver, Sauro, Herbert M.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

4

Bioinformatics in China: A Personal Perspective

Wei, Liping, Yu, Jun, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 289 KB

english, 2008

5

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

Wang, Peng, Sidney, John, Dow, Courtney, Mothé, Bianca, Sette, Alessandro, Peters, Bjoern, Stormo, Gary

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 203 KB

english, 2008

6

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm

Sánchez, Ignacio E., Beltrao, Pedro, Stricher, Francois, Schymkowitz, Joost, Ferkinghoff-Borg, Jesper, Rousseau, Frederic, Serrano, Luis, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 424 KB

english, 2008

7

Efficient Olfactory Coding in the Pheromone Receptor Neuron of a Moth

Kostal, Lubomir, Lansky, Petr, Rospars, Jean-Pierre, Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 397 KB

english, 2008

8

Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes

Bohlin, Jon, Skjerve, Eystein, Ussery, David W., Stormo, Gary

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 414 KB

english, 2008

9

The Emergence and Fate of Horizontally Acquired Genes in Escherichia coli

van Passel, Mark W. J., Marri, Pradeep Reddy, Ochman, Howard, Bonhoeffer, Sebastian

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 152 KB

english, 2008

10

Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data

Bandyopadhyay, Sourav, Kelley, Ryan, Krogan, Nevan J., Ideker, Trey, Raval, Alpan

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 555 KB

english, 2008

11

Dimensionality and Dynamics in the Behavior of C. elegans

Stephens, Greg J., Johnson-Kerner, Bethany, Bialek, William, Ryu, William S., Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 423 KB

english, 2008

12

The Role of Elastic Stresses on Leaf Venation Morphogenesis

Laguna, Maria F., Bohn, Steffen, Jagla, Eduardo A., Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 668 KB

english, 2008

13

Binding-Induced Folding of a Natively Unstructured Transcription Factor

Turjanski, Adrian Gustavo, Gutkind, J. Silvio, Best, Robert B., Hummer, Gerhard, Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 466 KB

english, 2008

14

Synaptic Learning Rules and Sparse Coding in a Model Sensory System

Finelli, Luca A., Haney, Seth, Bazhenov, Maxim, Stopfer, Mark, Sejnowski, Terrence J., Graham, Lyle J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

15

A Quick Guide for Computer-Assisted Instruction in Computational Biology and Bioinformatics

Costa, Manuel João, Galembeck, Eduardo, Marson, Guilherme A., Torres, Bayardo B., Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 152 KB

english, 2008

16

Predicting Co-Complexed Protein Pairs from Heterogeneous Data

Qiu, Jian, Noble, William Stafford, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 498 KB

english, 2008

17

Distinct Timing Mechanisms Produce Discrete and Continuous Movements

Huys, Raoul, Studenka, Breanna E., Rheaume, Nicole L., Zelaznik, Howard N., Jirsa, Viktor K., Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 509 KB

english, 2008

18

Translational Systems Biology of Inflammation

Vodovotz, Yoram, Csete, Marie, Bartels, John, Chang, Steven, An, Gary, McEntyre, Johanna

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 147 KB

english, 2008

19

The Statistical Neuroanatomy of Frontal Networks in the Macaque

Averbeck, Bruno B., Seo, Moonsang, Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 623 KB

english, 2008

20

An AP Endonuclease 1–DNA Polymerase β Complex: Theoretical Prediction of Interacting Surfaces

Abyzov, Alexej, Uzun, Alper, Strauss, Phyllis R., Ilyin, Valentin A., Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.63 MB

english, 2008

21

Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes

Lin, Michael F., Deoras, Ameya N., Rasmussen, Matthew D., Kellis, Manolis, Guigó, Roderic

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 526 KB

english, 2008