Volume 4; Issue 7

PLoS Computational Biology

Volume 4; Issue 7

1

Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels

Dmitriev, Dmitry A., Rakitov, Roman A., Stormo, Gary

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 623 KB

english, 2008

2

Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms

Cheng, Tammy M. K., Lu, Yu-En, Vendruscolo, Michele, Lio', Pietro, Blundell, Tom L., Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 710 KB

english, 2008

3

Unraveling Protein Networks with Power Graph Analysis

Royer, Loïc, Reimann, Matthias, Andreopoulos, Bill, Schroeder, Michael, Berg, Johannes

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 2.42 MB

english, 2008

4

Evolution of Evolvability in Gene Regulatory Networks

Crombach, Anton, Hogeweg, Paulien, Sauro, Herbert M.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 724 KB

english, 2008

5

Probing the Extent of Randomness in Protein Interaction Networks

Ivanic, Joseph, Wallqvist, Anders, Reifman, Jaques, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 466 KB

english, 2008

6

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

Nielsen, Morten, Lundegaard, Claus, Blicher, Thomas, Peters, Bjoern, Sette, Alessandro, Justesen, Sune, Buus, Søren, Lund, Ole, Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 701 KB

english, 2008

7

Outlook on Thailand's Genomics and Computational Biology Research and Development

Tongsima, Wannipha, Tongsima, Sissades, Palittapongarnpim, Prasit, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 138 KB

english, 2008

8

Computational Biology Resources Lack Persistence and Usability

Veretnik, Stella, Fink, J. Lynn, Bourne, Philip E., Bryant, Barbara

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 89 KB

english, 2008

9

Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology

Devarajan, Karthik, Bryant, Barbara

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 352 KB

english, 2008

10

ISCB Honors David Haussler and Aviv Regev

Sansom, Clare, Morrison McKay, B. J., Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 132 KB

english, 2008

11

Local Function Conservation in Sequence and Structure Space

Weinhold, Nils, Sander, Oliver, Domingues, Francisco S., Lengauer, Thomas, Sommer, Ingolf, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 467 KB

english, 2008

12

Similarity Queries for Temporal Toxicogenomic Expression Profiles

Smith, Adam A., Vollrath, Aaron, Bradfield, Christopher A., Craven, Mark, Lengauer, Thomas

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 728 KB

english, 2008

13

Intrinsic Gain Modulation and Adaptive Neural Coding

Hong, Sungho, Lundstrom, Brian Nils, Fairhall, Adrienne L., Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 401 KB

english, 2008

14

Optimal Compensation for Temporal Uncertainty in Movement Planning

Hudson, Todd E., Maloney, Laurence T., Landy, Michael S., Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 311 KB

english, 2008

15

Memory Switches in Chemical Reaction Space

Ramakrishnan, Naren, Bhalla, Upinder S., Sauro, Herbert M.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 496 KB

english, 2008

16

Using Expression Profiles of Caenorhabditis elegans Neurons To Identify Genes That Mediate Synaptic Connectivity

Baruch, Leehod, Itzkovitz, Shalev, Golan-Mashiach, Michal, Shapiro, Ehud, Segal, Eran, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 362 KB

english, 2008

17

Emergent Synchronous Bursting of Oxytocin Neuronal Network

Rossoni, Enrico, Feng, Jianfeng, Tirozzi, Brunello, Brown, David, Leng, Gareth, Moos, Françoise, Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.59 MB

english, 2008

18

Predicting and Validating Protein Interactions Using Network Structure

Chen, Pao-Yang, Deane, Charlotte M., Reinert, Gesine, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 280 KB

english, 2008

19

Kinetic Modeling of the Assembly, Dynamic Steady State, and Contraction of the FtsZ Ring in Prokaryotic Cytokinesis

Surovtsev, Ivan V., Morgan, Jeffrey J., Lindahl, Paul A., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 673 KB

english, 2008

20

Dynamics of Immune Escape during HIV/SIV Infection

Althaus, Christian L., De Boer, Rob J., Pascual, Mercedes

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 415 KB

english, 2008

21

Circadian Phase Resetting via Single and Multiple Control Targets

Bagheri, Neda, Stelling, Jörg, Doyle, Francis J., Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 273 KB

english, 2008

22

Increased Brain Signal Variability Accompanies Lower Behavioral Variability in Development

McIntosh, Anthony Randal, Kovacevic, Natasa, Itier, Roxane J., Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 484 KB

english, 2008

23

The Ascent of the Abundant: How Mutational Networks Constrain Evolution

Cowperthwaite, Matthew C., Economo, Evan P., Harcombe, William R., Miller, Eric L., Meyers, Lauren Ancel, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 836 KB

english, 2008

24

Isolation-by-Distance and Outbreeding Depression Are Sufficient to Drive Parapatric Speciation in the Absence of Environmental Influences

Hoelzer, Guy A., Drewes, Rich, Meier, Jeffrey, Doursat, René, Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 793 KB

english, 2008

25

The Spatiotemporal Pattern of Src Activation at Lipid Rafts Revealed by Diffusion-Corrected FRET Imaging

Lu, Shaoying, Ouyang, Mingxing, Seong, Jihye, Zhang, Jin, Chien, Shu, Wang, Yingxiao, Butler, Peter J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 598 KB

english, 2008

26

Protein Complex Evolution Does Not Involve Extensive Network Rewiring

van Dam, Teunis J. P., Snel, Berend, Pilpel, Yitzhak

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 281 KB

english, 2008

27

The Generation of Promoter-Mediated Transcriptional Noise in Bacteria

Mitarai, Namiko, Dodd, Ian B., Crooks, Michael T., Sneppen, Kim, Margalit, Hanah

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 812 KB

english, 2008

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