Volume 4; Issue 9

PLoS Computational Biology

Volume 4; Issue 9

1

Sizing Up Allometric Scaling Theory

Savage, Van M., Deeds, Eric J., Fontana, Walter, Enquist, Brian J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 428 KB

english, 2008

2

Structural Biology by NMR: Structure, Dynamics, and Interactions

Markwick, Phineus R. L., Malliavin, Thérèse, Nilges, Michael, McEntyre, Johanna

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 289 KB

english, 2008

3

A Dual Receptor Crosstalk Model of G-Protein-Coupled Signal Transduction

Flaherty, Patrick, Radhakrishnan, Mala L., Dinh, Tuan, Rebres, Robert A., Roach, Tamara I., Jordan, Michael I., Arkin, Adam P., Asthagiri, Anand

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 2.08 MB

english, 2008

4

Probabilistic Phylogenetic Inference with Insertions and Deletions

Rivas, Elena, Eddy, Sean R., Haussler, David

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 683 KB

english, 2008

5

Insights into Protein–DNA Interactions through Structure Network Analysis

Sathyapriya, R., Vijayabaskar, M. S., Vishveshwara, Saraswathi, Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 683 KB

english, 2008

6

Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis

Riley, Robert, Pellegrini, Matteo, Eisenberg, David, Lengauer, Thomas

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 953 KB

english, 2008

7

Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes

Clune, Jeff, Misevic, Dusan, Ofria, Charles, Lenski, Richard E., Elena, Santiago F., Sanjuán, Rafael, Hurst, Laurence D.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

8

Structure-Guided Comparative Analysis of Proteins: Principles, Tools, and Applications for Predicting Function

Mazumder, Raja, Vasudevan, Sona, Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.07 MB

english, 2008

9

Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks

Jamshidi, Neema, Palsson, Bernhard Ø., Miyano, Satoru

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.68 MB

english, 2008

10

Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information

Wang, Kai, Horst, Jeremy A., Cheng, Gong, Nickle, David C., Samudrala, Ram, Altman, Russ B.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 630 KB

english, 2008

11

Organization of Excitable Dynamics in Hierarchical Biological Networks

Müller-Linow, Mark, Hilgetag, Claus C., Hütt, Marc-Thorsten, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 4.43 MB

english, 2008

12

Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae

Wang, Ji-Ping, Fondufe-Mittendorf, Yvonne, Xi, Liqun, Tsai, Guei-Feng, Segal, Eran, Widom, Jonathan, Stormo, Gary

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

13

Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo

Lopes, Francisco J. P., Vieira, Fernando M. C., Holloway, David M., Bisch, Paulo M., Spirov, Alexander V., Ohler, Uwe

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 470 KB

english, 2008

14

Modeling Recursive RNA Interference

Marshall, Wallace F., Mattick, John S.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 613 KB

english, 2008

15

Advanced Genomic Data Mining

Fernández-Suárez, Xosé M., Birney, Ewan, Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 406 KB

english, 2008

16

Adaptation and Selective Information Transmission in the Cricket Auditory Neuron AN2

Wimmer, Klaus, Hildebrandt, K. Jannis, Hennig, R. Matthias, Obermayer, Klaus, Latham, Peter E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.22 MB

english, 2008

17

Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads

Salzberg, Steven L., Sommer, Daniel D., Puiu, Daniela, Lee, Vincent T., Noble, William Stafford

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 166 KB

english, 2008

18

Rhythm Generation through Period Concatenation in Rat Somatosensory Cortex

Kramer, Mark A., Roopun, Anita K., Carracedo, Lucy M., Traub, Roger D., Whittington, Miles A., Kopell, Nancy J., Friston, Karl J.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.96 MB

english, 2008

19

Cavities and Atomic Packing in Protein Structures and Interfaces

Sonavane, Shrihari, Chakrabarti, Pinak, Chothia, Cyrus

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.04 MB

english, 2008

20

Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth

Merks, Roeland M. H., Perryn, Erica D., Shirinifard, Abbas, Glazier, James A., Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.75 MB

english, 2008

21

A Genomewide Functional Network for the Laboratory Mouse

Guan, Yuanfang, Myers, Chad L., Lu, Rong, Lemischka, Ihor R., Bult, Carol J., Troyanskaya, Olga G., Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 1.42 MB

english, 2008

22

Identifying the Important HIV-1 Recombination Breakpoints

Archer, John, Pinney, John W., Fan, Jun, Simon-Loriere, Etienne, Arts, Eric J., Negroni, Matteo, Robertson, David L., Bonhoeffer, Sebastian

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 211 KB

english, 2008

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