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Volume 5; Issue 10
Main
PLoS Computational Biology
Volume 5; Issue 10
PLoS Computational Biology
Volume 5; Issue 10
1
Towards a Mathematical Theory of Cortical Micro-circuits
George, Dileep
,
Hawkins, Jeff
,
Friston, Karl J.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 2.09 MB
Your tags:
english, 2009
2
An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations
Atkinson, Holly J.
,
Babbitt, Patricia C.
,
Dunbrack, Roland
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 2.65 MB
Your tags:
english, 2009
3
Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase
Barıs, Ibrahim
,
Tuncel, Aytug
,
Ozber, Natali
,
Keskin, Ozlem
,
Kavakli, Ibrahim Halil
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 680 KB
Your tags:
english, 2009
4
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations
Okimoto, Noriaki
,
Futatsugi, Noriyuki
,
Fuji, Hideyoshi
,
Suenaga, Atsushi
,
Morimoto, Gentaro
,
Yanai, Ryoko
,
Ohno, Yousuke
,
Narumi, Tetsu
,
Taiji, Makoto
,
Case, David
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 809 KB
Your tags:
english, 2009
5
Subbarrel Patterns in Somatosensory Cortical Barrels Can Emerge from Local Dynamic Instabilities
Ermentrout, Bard
,
Simons, Daniel J.
,
Land, Peter W.
,
Friston, Karl J.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 651 KB
Your tags:
english, 2009
6
Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy
Rong, Libin
,
Perelson, Alan S.
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.81 MB
Your tags:
english, 2009
7
Gene Circuit Analysis of the Terminal Gap Gene huckebein
Ashyraliyev, Maksat
,
Siggens, Ken
,
Janssens, Hilde
,
Blom, Joke
,
Akam, Michael
,
Jaeger, Johannes
,
Thieffry, Denis
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.19 MB
Your tags:
english, 2009
8
The Role of Medical Structural Genomics in Discovering New Drugs for Infectious Diseases
Van Voorhis, Wesley C.
,
Hol, Wim G. J.
,
Myler, Peter J.
,
Stewart, Lance J.
,
Fraenkel, Ernest
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 394 KB
Your tags:
english, 2009
9
‘Glocal’ Robustness Analysis and Model Discrimination for Circadian Oscillators
Hafner, Marc
,
Koeppl, Heinz
,
Hasler, Martin
,
Wagner, Andreas
,
Papin, Jason A.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 377 KB
Your tags:
english, 2009
10
Intrinsic Structural Disorder Confers Cellular Viability on Oncogenic Fusion Proteins
Hegyi, Hedi
,
Buday, László
,
Tompa, Peter
,
Dunbrack, Roland
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 380 KB
Your tags:
english, 2009
11
Discovering the Phylodynamics of RNA Viruses
Holmes, Edward C.
,
Grenfell, Bryan T.
,
Fraenkel, Ernest
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 223 KB
Your tags:
english, 2009
12
Combining Fungal Biopesticides and Insecticide-Treated Bednets to Enhance Malaria Control
Hancock, Penelope A.
,
Smith, Thomas A.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 720 KB
Your tags:
english, 2009
13
The Modular Organization of Protein Interactions in Escherichia coli
Peregrín-Alvarez, José M.
,
Xiong, Xuejian
,
Su, Chong
,
Parkinson, John
,
Ruppin, Eytan
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.06 MB
Your tags:
english, 2009
14
Getting Started in Gene Expression Microarray Analysis
Slonim, Donna K.
,
Yanai, Itai
,
Troyanskaya, Olga G.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 96 KB
Your tags:
english, 2009
15
Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots
Sikora, Mateusz
,
Sułkowska, Joanna I.
,
Cieplak, Marek
,
Garcia, Angel
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 586 KB
Your tags:
english, 2009
16
A Model of Cardiovascular Disease Giving a Plausible Mechanism for the Effect of Fractionated Low-Dose Ionizing Radiation Exposure
Little, Mark P.
,
Gola, Anna
,
Tzoulaki, Ioanna
,
Richardson, Richard B.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 307 KB
Your tags:
english, 2009
17
Computational Resources in Infectious Disease: Limitations and Challenges
Berglund, Eva C.
,
Nystedt, Björn
,
Andersson, Siv G. E.
,
Fraenkel, Ernest
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 155 KB
Your tags:
english, 2009
18
Perturbation-based Markovian Transmission Model for Probing Allosteric Dynamics of Large Macromolecular Assembling: A Study of GroEL-GroES
Lu, Hsiao-Mei
,
Liang, Jie
,
Dunbrack, Roland
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.21 MB
Your tags:
english, 2009
19
The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation
Liu, Jin
,
Nussinov, Ruth
,
Lengauer, Thomas
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.01 MB
Your tags:
english, 2009
20
Computational Biology in Colombia
Restrepo, Silvia
,
Pinzón, Andrés
,
Rodríguez-R, Luis Miguel
,
Sierra, Roberto
,
Grajales, Alejandro
,
Bernal, Adriana
,
Barreto, Emiliano
,
Moreno, Pedro
,
Zambrano, Maria Mercedes
,
Cristancho, Marco
,
Gonzál
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 90 KB
Your tags:
english, 2009
21
Steps in the Bacterial Flagellar Motor
Mora, Thierry
,
Yu, Howard
,
Sowa, Yoshiyuki
,
Wingreen, Ned S.
,
Rao, Christopher
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 662 KB
Your tags:
english, 2009
22
Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization
Takeuchi, Nobuto
,
Hogeweg, Paulien
,
Stormo, Gary D.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.22 MB
Your tags:
english, 2009
23
Invariant Distribution of Promoter Activities in Escherichia coli
Zaslaver, Alon
,
Kaplan, Shai
,
Bren, Anat
,
Jinich, Adrian
,
Mayo, Avi
,
Dekel, Erez
,
Alon, Uri
,
Itzkovitz, Shalev
,
Rao, Christopher
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 478 KB
Your tags:
english, 2009
24
Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis
Bentley, Katie
,
Mariggi, Giovanni
,
Gerhardt, Holger
,
Bates, Paul A.
,
Ranganathan, Rama
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 3.37 MB
Your tags:
english, 2009
25
Specific Entrainment of Mitral Cells during Gamma Oscillation in the Rat Olfactory Bulb
David, François O.
,
Hugues, Etienne
,
Cenier, Tristan
,
Fourcaud-Trocmé, Nicolas
,
Buonviso, Nathalie
,
Morrison, Abigail
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 2.03 MB
Your tags:
english, 2009
26
Antigenic Diversity, Transmission Mechanisms, and the Evolution of Pathogens
Lange, Alexander
,
Ferguson, Neil M.
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 718 KB
Your tags:
english, 2009
27
Structure-Based Predictive Models for Allosteric Hot Spots
Demerdash, Omar N. A.
,
Daily, Michael D.
,
Mitchell, Julie C.
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 1.02 MB
Your tags:
english, 2009
28
Structure of Protein Interaction Networks and Their Implications on Drug Design
Hase, Takeshi
,
Tanaka, Hiroshi
,
Suzuki, Yasuhiro
,
Nakagawa, So
,
Kitano, Hiroaki
,
Rzhetsky, Andrey
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 554 KB
Your tags:
english, 2009
29
Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein
Atilgan, Canan
,
Atilgan, Ali Rana
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 863 KB
Your tags:
english, 2009
30
Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters
Jeon, Jouhyun
,
Yang, Jae-Seong
,
Kim, Sanguk
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 744 KB
Your tags:
english, 2009
31
Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars
Cai, Yizhi
,
Lux, Matthew W.
,
Adam, Laura
,
Peccoud, Jean
,
Sauro, Herbert M.
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 592 KB
Your tags:
english, 2009
32
Grasping Objects with Environmentally Induced Position Uncertainty
Christopoulos, Vassilios N.
,
Schrater, Paul R.
,
Kording, Konrad
Journal:
PLoS Computational Biology
Year:
2009
Language:
english
File:
PDF, 459 KB
Your tags:
english, 2009
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