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Volume 7; Issue 1
Main
PLoS Computational Biology
Volume 7; Issue 1
PLoS Computational Biology
Volume 7; Issue 1
1
From Spiking Neuron Models to Linear-Nonlinear Models
Ostojic, Srdjan
,
Brunel, Nicolas
,
Latham, Peter E.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.77 MB
Your tags:
english, 2011
2
Practical Measures of Integrated Information for Time-Series Data
Barrett, Adam B.
,
Seth, Anil K.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 613 KB
Your tags:
english, 2011
3
Measuring the Evolutionary Rewiring of Biological Networks
Shou, Chong
,
Bhardwaj, Nitin
,
Lam, Hugo Y. K.
,
Yan, Koon-Kiu
,
Kim, Philip M.
,
Snyder, Michael
,
Gerstein, Mark B.
,
Snel, Berend
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 682 KB
Your tags:
english, 2011
4
Relationships between Gene Expression and Brain Wiring in the Adult Rodent Brain
French, Leon
,
Pavlidis, Paul
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 2.87 MB
Your tags:
english, 2011
5
Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA
Zhabinskaya, Dina
,
Benham, Craig J.
,
Dokholyan, Nikolay V.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 713 KB
Your tags:
english, 2011
6
A Computational and Experimental Study of the Regulatory Mechanisms of the Complement System
Liu, Bing
,
Zhang, Jing
,
Tan, Pei Yi
,
Hsu, David
,
Blom, Anna M.
,
Leong, Benjamin
,
Sethi, Sunil
,
Ho, Bow
,
Ding, Jeak Ling
,
Thiagarajan, P. S.
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 899 KB
Your tags:
english, 2011
7
Integrative Features of the Yeast Phosphoproteome and Protein–Protein Interaction Map
Yachie, Nozomu
,
Saito, Rintaro
,
Sugiyama, Naoyuki
,
Tomita, Masaru
,
Ishihama, Yasushi
,
Ofran, Yanay
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 513 KB
Your tags:
english, 2011
8
A Novel Approach to Pharmacodynamic Assessment of Antimicrobial Agents: New Insights to Dosing Regimen Design
Tam, Vincent H.
,
Nikolaou, Michael
,
Bourne, Philip E.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 378 KB
Your tags:
english, 2011
9
A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt
Buske, Peter
,
Galle, Jörg
,
Barker, Nick
,
Aust, Gabriela
,
Clevers, Hans
,
Loeffler, Markus
,
Lauffenburger, Douglas
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.02 MB
Your tags:
english, 2011
10
Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome
Henrichsen, Charlotte N.
,
Csárdi, Gábor
,
Zabot, Marie-Thérèse
,
Fusco, Carmela
,
Bergmann, Sven
,
Merla, Giuseppe
,
Reymond, Alexandre
,
Shamir, Ron
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.16 MB
Your tags:
english, 2011
11
Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings
Payzan-LeNestour, Elise
,
Bossaerts, Peter
,
Behrens, Tim
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 773 KB
Your tags:
english, 2011
12
Thermodynamic Stability of Histone H3 Is a Necessary but not Sufficient Driving Force for its Evolutionary Conservation
Ramachandran, Srinivas
,
Vogel, Lisa
,
Strahl, Brian D.
,
Dokholyan, Nikolay V.
,
Shakhnovich, Eugene I.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 431 KB
Your tags:
english, 2011
13
Decrypting the Sequence of Structural Events during the Gating Transition of Pentameric Ligand-Gated Ion Channels Based on an Interpolated Elastic Network Model
Zheng, Wenjun
,
Auerbach, Anthony
,
Bonneau, Richard
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 567 KB
Your tags:
english, 2011
14
Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding
Melvin, Iain
,
Weston, Jason
,
Noble, William Stafford
,
Leslie, Christina
,
Levitt, Michael
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.04 MB
Your tags:
english, 2011
15
Predicting Novel Binding Modes of Agonists to β Adrenergic Receptors Using All-Atom Molecular Dynamics Simulations
Vanni, Stefano
,
Neri, Marilisa
,
Tavernelli, Ivano
,
Rothlisberger, Ursula
,
Briggs, James M.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 2.64 MB
Your tags:
english, 2011
16
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
Sharpton, Thomas J.
,
Riesenfeld, Samantha J.
,
Kembel, Steven W.
,
Ladau, Joshua
,
O'Dwyer, James P.
,
Green, Jessica L.
,
Eisen, Jonathan A.
,
Pollard, Katherine S.
,
Béjà, Oded
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 779 KB
Your tags:
english, 2011
17
Impact of Sarcoplasmic Reticulum Calcium Release on Calcium Dynamics and Action Potential Morphology in Human Atrial Myocytes: A Computational Study
Koivumäki, Jussi T.
,
Korhonen, Topi
,
Tavi, Pasi
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.32 MB
Your tags:
english, 2011
18
A Review of 2010 for PLoS Computational Biology
Dickin, Rosemary
,
Marden, Cecy
,
Collings, Andrew M.
,
Nussinov, Ruth
,
Bourne, Philip E.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 70 KB
Your tags:
english, 2011
19
Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network
Varier, Sreedevi
,
Kaiser, Marcus
,
Friston, Karl J.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 497 KB
Your tags:
english, 2011
20
Is My Network Module Preserved and Reproducible?
Langfelder, Peter
,
Luo, Rui
,
Oldham, Michael C.
,
Horvath, Steve
,
Bourne, Philip E.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 2.20 MB
Your tags:
english, 2011
21
Estimation of Parent Specific DNA Copy Number in Tumors using High-Density Genotyping Arrays
Chen, Hao
,
Xing, Haipeng
,
Zhang, Nancy R.
,
Markel, Scott
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.62 MB
Your tags:
english, 2011
22
Erratic Flu Vaccination Emerges from Short-Sighted Behavior in Contact Networks
Cornforth, Daniel M.
,
Reluga, Timothy C.
,
Shim, Eunha
,
Bauch, Chris T.
,
Galvani, Alison P.
,
Meyers, Lauren Ancel
,
Salathé, Marcel
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 574 KB
Your tags:
english, 2011
23
The Role of Additive Neurogenesis and Synaptic Plasticity in a Hippocampal Memory Model with Grid-Cell Like Input
Appleby, Peter A.
,
Kempermann, Gerd
,
Wiskott, Laurenz
,
Morrison, Abigail
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.31 MB
Your tags:
english, 2011
24
Protrusive Push versus Enveloping Embrace: Computational Model of Phagocytosis Predicts Key Regulatory Role of Cytoskeletal Membrane Anchors
Herant, Marc
,
Lee, Cheng-Yuk
,
Dembo, Micah
,
Heinrich, Volkmar
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 275 KB
Your tags:
english, 2011
25
Benchmarking Ontologies: Bigger or Better?
Yao, Lixia
,
Divoli, Anna
,
Mayzus, Ilya
,
Evans, James A.
,
Rzhetsky, Andrey
,
Cohen, K. Bretonnel
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 1.32 MB
Your tags:
english, 2011
26
Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia
Bourne, Philip E.
Journal:
PLoS Computational Biology
Year:
2011
Language:
english
File:
PDF, 68 KB
Your tags:
english, 2011
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