Volume 8; Issue 1

PLoS Computational Biology

Volume 8; Issue 1

1

Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks

Meisel, Christian, Storch, Alexander, Hallmeyer-Elgner, Susanne, Bullmore, Ed, Gross, Thilo, Behrens, Tim

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

2

Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana

Seifert, Michael, Gohr, André, Strickert, Marc, Grosse, Ivo, Noble, William Stafford

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 704 KB

english, 2012

3

Computational and Statistical Analysis of Protein Mass Spectrometry Data

Noble, William Stafford, MacCoss, Michael J., Bourne, Philip E.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 217 KB

english, 2012

4

Senescent Cells in Growing Tumors: Population Dynamics and Cancer Stem Cells

La Porta, Caterina A. M., Zapperi, Stefano, Sethna, James P., Domany, Eytan

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 2.69 MB

english, 2012

5

Dopamine, Affordance and Active Inference

Friston, Karl J., Shiner, Tamara, FitzGerald, Thomas, Galea, Joseph M., Adams, Rick, Brown, Harriet, Dolan, Raymond J., Moran, Rosalyn, Stephan, Klaas Enno, Bestmann, Sven, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.06 MB

english, 2012

6

Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies

Fusi, Nicoló, Stegle, Oliver, Lawrence, Neil D., Stephens, Matthew

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 555 KB

english, 2012

7

A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser

Hsia, Justin, Holtz, William J., Huang, Daniel C., Arcak, Murat, Maharbiz, Michel M., Alber, Mark S.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 3.51 MB

english, 2012

8

Global Analysis of Small Molecule Binding to Related Protein Targets

Kruger, Felix A., Overington, John P., Tucker-Kellogg, Greg

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 614 KB

english, 2012

9

Protein Design Using Continuous Rotamers

Gainza, Pablo, Roberts, Kyle E., Donald, Bruce R., Teichmann, Sarah A.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

10

A Mathematical Methodology for Determining the Temporal Order of Pathway Alterations Arising during Gliomagenesis

Cheng, Yu-Kang, Beroukhim, Rameen, Levine, Ross L., Mellinghoff, Ingo K., Holland, Eric C., Michor, Franziska, Bonhoeffer, Sebastian

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 783 KB

english, 2012

11

Macro-level Modeling of the Response of C. elegans Reproduction to Chronic Heat Stress

McMullen, Patrick D., Aprison, Erin Z., Winter, Peter B., Amaral, Luis A. N., Morimoto, Richard I., Ruvinsky, Ilya, Sporns, Olaf

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 865 KB

english, 2012

12

A Viral Dynamic Model for Treatment Regimens with Direct-acting Antivirals for Chronic Hepatitis C Infection

Adiwijaya, Bambang S., Kieffer, Tara L., Henshaw, Joshua, Eisenhauer, Karen, Kimko, Holly, Alam, John J., Kauffman, Robert S., Garg, Varun, Kosakovsky Pond, Sergei L.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 741 KB

english, 2012

13

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth

Thakar, Juilee, Pathak, Ashutosh K., Murphy, Lisa, Albert, Réka, Cattadori, Isabella M., De Boer, Rob J.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.50 MB

english, 2012

14

Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding

Moal, Iain H., Bates, Paul A., Nussinov, Ruth

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

15

Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism

Achcar, Fiona, Kerkhoven, Eduard J., Bakker, Barbara M., Barrett, Michael P., Breitling, Rainer, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 833 KB

english, 2012