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Volume 8; Issue 2
Main
PLoS Computational Biology
Volume 8; Issue 2
PLoS Computational Biology
Volume 8; Issue 2
1
Structural Consensus among Antibodies Defines the Antigen Binding Site
Kunik, Vered
,
Peters, Bjoern
,
Ofran, Yanay
,
Baker, Brian
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.89 MB
Your tags:
english, 2012
2
Stochastic De-repression of Rhodopsins in Single Photoreceptors of the Fly Retina
Sood, Pranidhi
,
Johnston, Robert J.
,
Kussell, Edo
,
Shvartsman, Stanislav
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 2.50 MB
Your tags:
english, 2012
3
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer
Shigemizu, Daichi
,
Hu, Zhenjun
,
Hung, Jui-Hung
,
Huang, Chia-Ling
,
Wang, Yajie
,
DeLisi, Charles
,
Altman, Russ B.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 307 KB
Your tags:
english, 2012
4
In silico Experimentation of Glioma Microenvironment Development and Anti-tumor Therapy
Wu, Yu
,
Lu, Yao
,
Chen, Weiqiang
,
Fu, Jianping
,
Fan, Rong
,
Tucker-Kellogg, Greg
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.42 MB
Your tags:
english, 2012
5
DOGS: Reaction-Driven de novo Design of Bioactive Compounds
Hartenfeller, Markus
,
Zettl, Heiko
,
Walter, Miriam
,
Rupp, Matthias
,
Reisen, Felix
,
Proschak, Ewgenij
,
Weggen, Sascha
,
Stark, Holger
,
Schneider, Gisbert
,
Briggs, James M.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 832 KB
Your tags:
english, 2012
6
OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
Zomorrodi, Ali R.
,
Maranas, Costas D.
,
Rao, Christopher V.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 760 KB
Your tags:
english, 2012
7
Joint Analysis of Multiple Metagenomic Samples
Baran, Yael
,
Halperin, Eran
,
Ponting, Chris P.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 512 KB
Your tags:
english, 2012
8
Minimal Size of Cell Assemblies Coordinated by Gamma Oscillations
Börgers, Christoph
,
Talei Franzesi, Giovanni
,
LeBeau, Fiona E. N.
,
Boyden, Edward S.
,
Kopell, Nancy J.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 2.03 MB
Your tags:
english, 2012
9
A Cell-based Computational Modeling Approach for Developing Site-Directed Molecular Probes
Yu, Jing-yu
,
Zheng, Nan
,
Mane, Gerta
,
Min, Kyoung Ah
,
Hinestroza, Juan P.
,
Zhu, Huaning
,
Stringer, Kathleen A.
,
Rosania, Gus R.
,
Mac Gabhann, Feilim
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 2.01 MB
Your tags:
english, 2012
10
Use It and Improve It or Lose It: Interactions between Arm Function and Use in Humans Post-stroke
Hidaka, Yukikazu
,
Han, Cheol E.
,
Wolf, Steven L.
,
Winstein, Carolee J.
,
Schweighofer, Nicolas
,
Diedrichsen, Jörn
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 574 KB
Your tags:
english, 2012
11
A Race between Tumor Immunoescape and Genome Maintenance Selects for Optimum Levels of (epi)genetic Instability
Iwami, Shingo
,
Haeno, Hiroshi
,
Michor, Franziska
,
Byrne, Helen M.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.57 MB
Your tags:
english, 2012
12
Subcellular Location of PKA Controls Striatal Plasticity: Stochastic Simulations in Spiny Dendrites
Oliveira, Rodrigo F.
,
Kim, MyungSook
,
Blackwell, Kim T.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.11 MB
Your tags:
english, 2012
13
Comparison of Insertional RNA Editing in Myxomycetes
Chen, Cai
,
Frankhouser, David
,
Bundschuh, Ralf
,
Ioshikhes, Ilya
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 670 KB
Your tags:
english, 2012
14
Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function
Quarta, Giulio
,
Sin, Ken
,
Schlick, Tamar
,
Gonzalez, Ruben
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 2.24 MB
Your tags:
english, 2012
15
Noise and Robustness in Phyllotaxis
Mirabet, Vincent
,
Besnard, Fabrice
,
Vernoux, Teva
,
Boudaoud, Arezki
,
Levine, Herbert
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.73 MB
Your tags:
english, 2012
16
Early Warning Signals for Critical Transitions: A Generalized Modeling Approach
Lade, Steven J.
,
Gross, Thilo
,
Pascual, Mercedes
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 338 KB
Your tags:
english, 2012
17
Human Visual Search Does Not Maximize the Post-Saccadic Probability of Identifying Targets
Morvan, Camille
,
Maloney, Laurence T.
,
Kording, Konrad P.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 762 KB
Your tags:
english, 2012
18
Novel Approach to Meta-Analysis of Microarray Datasets Reveals Muscle Remodeling-related Drug Targets and Biomarkers in Duchenne Muscular Dystrophy
Kotelnikova, Ekaterina
,
Shkrob, Maria A.
,
Pyatnitskiy, Mikhail A.
,
Ferlini, Alessandra
,
Daraselia, Nikolai
,
Altman, Russ B.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.15 MB
Your tags:
english, 2012
19
Control of Whole Heart Geometry by Intramyocardial Mechano-Feedback: A Model Study
Arts, Theo
,
Lumens, Joost
,
Kroon, Wilco
,
Delhaas, Tammo
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 908 KB
Your tags:
english, 2012
20
Developmental Maturation of Dynamic Causal Control Signals in Higher-Order Cognition: A Neurocognitive Network Model
Supekar, Kaustubh
,
Menon, Vinod
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.23 MB
Your tags:
english, 2012
21
Integrating Flux Balance Analysis into Kinetic Models to Decipher the Dynamic Metabolism of Shewanella oneidensis MR-1
Feng, Xueyang
,
Xu, You
,
Chen, Yixin
,
Tang, Yinjie J.
,
Reed, Jennifer L.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.23 MB
Your tags:
english, 2012
22
Modeling Cortisol Dynamics in the Neuro-endocrine Axis Distinguishes Normal, Depression, and Post-traumatic Stress Disorder (PTSD) in Humans
Sriram, K.
,
Rodriguez-Fernandez, Maria
,
Doyle, Francis J.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.11 MB
Your tags:
english, 2012
23
The Efficiency of the Human CD8+ T Cell Response: How Should We Quantify It, What Determines It, and Does It Matter?
Elemans, Marjet
,
Seich al Basatena, Nafisa-Katrin
,
Asquith, Becca
,
Antia, Rustom
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 368 KB
Your tags:
english, 2012
24
Paradoxical Evidence Integration in Rapid Decision Processes
Rüter, Johannes
,
Marcille, Nicolas
,
Sprekeler, Henning
,
Gerstner, Wulfram
,
Herzog, Michael H.
,
Sporns, Olaf
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 482 KB
Your tags:
english, 2012
25
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
Thomas, Paul D.
,
Wood, Valerie
,
Mungall, Christopher J.
,
Lewis, Suzanna E.
,
Blake, Judith A.
,
Bourne, Philip E.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 100 KB
Your tags:
english, 2012
26
Effects of Electrical and Structural Remodeling on Atrial Fibrillation Maintenance: A Simulation Study
Krogh-Madsen, Trine
,
Abbott, Geoffrey W.
,
Christini, David J.
,
McCulloch, Andrew D.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2012
27
Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data
Treviño, Santiago
,
Sun, Yudong
,
Cooper, Tim F.
,
Bassler, Kevin E.
,
Miyano, Satoru
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2012
28
The Role of Conserved Waters in Conformational Transitions of Q61H K-ras
Prakash, Priyanka
,
Sayyed-Ahmad, Abdallah
,
Gorfe, Alemayehu A.
,
Briggs, James M.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.18 MB
Your tags:
english, 2012
29
Positive Evolutionary Selection of an HD Motif on Alzheimer Precursor Protein Orthologues Suggests a Functional Role
Miklós, István
,
Zádori, Zoltán
,
Nussinov, Ruth
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 825 KB
Your tags:
english, 2012
30
Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures
Rappoport, Nadav
,
Linial, Michal
,
Rost, Burkhard
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.48 MB
Your tags:
english, 2012
31
On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP
Roldão, António
,
Mellado, Maria Candida M.
,
Lima, J. C.
,
Carrondo, Manuel J. T.
,
Alves, Paula M.
,
Oliveira, R.
,
Jernigan, Robert L.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 1.21 MB
Your tags:
english, 2012
32
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges
Khatri, Purvesh
,
Sirota, Marina
,
Butte, Atul J.
,
Ouzounis, Christos A.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 644 KB
Your tags:
english, 2012
33
Branch Mode Selection during Early Lung Development
Menshykau, Denis
,
Kraemer, Conradin
,
Iber, Dagmar
,
Crampin, Edmund J.
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 3.22 MB
Your tags:
english, 2012
34
Multi-Scale Modeling of HIV Infection in vitro and APOBEC3G-Based Anti-Retroviral Therapy
Hosseini, Iraj
,
Mac Gabhann, Feilim
,
Müller, Viktor
Journal:
PLoS Computational Biology
Year:
2012
Language:
english
File:
PDF, 3.39 MB
Your tags:
english, 2012
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