Volume 4; Issue 8

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PLoS Genetics
Volume 4; Issue 8

PLoS Genetics

Volume 4; Issue 8

1

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

Sittka, Alexandra, Lucchini, Sacha, Papenfort, Kai, Sharma, Cynthia M., Rolle, Katarzyna, Binnewies, Tim T., Hinton, Jay C. D., Vogel, Jörg, Burkholder, William F.

Journal:

Year:

2008

File:

PDF, 1.87 MB

2008

2

Sweating the Details: An Interview with Jamie Thomson

Gitschier, Jane

Journal:

Year:

2008

Language:

english

File:

PDF, 142 KB

english, 2008

3

A Catalog of Neutral and Deleterious Polymorphism in Yeast

Doniger, Scott W., Kim, Hyun Seok, Swain, Devjanee, Corcuera, Daniella, Williams, Morgan, Yang, Shiaw-Pyng, Fay, Justin C., Pritchard, Jonathan K.

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Year:

2008

Language:

english

File:

PDF, 408 KB

english, 2008

4

Genetic Variation in an Individual Human Exome

Ng, Pauline C., Levy, Samuel, Huang, Jiaqi, Stockwell, Timothy B., Walenz, Brian P., Li, Kelvin, Axelrod, Nelson, Busam, Dana A., Strausberg, Robert L., Venter, J. Craig, Schork, Nicholas J.

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Year:

2008

Language:

english

File:

PDF, 423 KB

english, 2008

5

High-Resolution Mapping of Gene Expression Using Association in an Outbred Mouse Stock

Ghazalpour, Anatole, Doss, Sudheer, Kang, Hyun, Farber, Charles, Wen, Ping-Zi, Brozell, Alec, Castellanos, Ruth, Eskin, Eleazar, Smith, Desmond J., Drake, Thomas A., Lusis, Aldons J., Gibson, Greg

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Year:

2008

Language:

english

File:

PDF, 416 KB

english, 2008

6

Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection

Castric, Vincent, Bechsgaard, Jesper, Schierup, Mikkel H., Vekemans, Xavier, Bergelson, Joy

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Year:

2008

Language:

english

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PDF, 301 KB

english, 2008

7

Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis

Woo, Hye Ryun, Dittmer, Travis A., Richards, Eric J., Kakutani, Tetsuji

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Year:

2008

Language:

english

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PDF, 620 KB

english, 2008

8

Delayed and Accelerated Aging Share Common Longevity Assurance Mechanisms

Schumacher, Björn, van der Pluijm, Ingrid, Moorhouse, Michael J., Kosteas, Theodore, Robinson, Andria Rasile, Suh, Yousin, Breit, Timo M., van Steeg, Harry, Niedernhofer, Laura J., van IJcken, Wilfred

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Year:

2008

Language:

english

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PDF, 644 KB

english, 2008

9

Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays

Homer, Nils, Szelinger, Szabolcs, Redman, Margot, Duggan, David, Tembe, Waibhav, Muehling, Jill, Pearson, John V., Stephan, Dietrich A., Nelson, Stanley F., Craig, David W., Visscher, Peter M.

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Year:

2008

Language:

english

File:

PDF, 375 KB

english, 2008

10

The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

Steglich, Claudia, Futschik, Matthias E., Lindell, Debbie, Voss, Bjoern, Chisholm, Sallie W., Hess, Wolfgang R., Matic, Ivan

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Year:

2008

Language:

english

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PDF, 465 KB

english, 2008

11

Identification and Functional Analysis of Light-Responsive Unique Genes and Gene Family Members in Rice

Jung, Ki-Hong, Lee, Jinwon, Dardick, Chris, Seo, Young-Su, Cao, Peijian, Canlas, Patrick, Phetsom, Jirapa, Xu, Xia, Ouyang, Shu, An, Kyungsook, Cho, Yun-Ja, Lee, Geun-Cheol, Lee, Yoosook, An, Gynheung

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Year:

2008

Language:

english

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PDF, 788 KB

english, 2008

12

Rise of the Machines

Gresham, David, Kruglyak, Leonid, Frankel, Wayne N.

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Year:

2008

Language:

english

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PDF, 106 KB

english, 2008

13

The Identification of Zebrafish Mutants Showing Alterations in Senescence-Associated Biomarkers

Kishi, Shuji, Bayliss, Peter E., Uchiyama, Junzo, Koshimizu, Eriko, Qi, Jie, Nanjappa, Purushothama, Imamura, Shintaro, Islam, Asiful, Neuberg, Donna, Amsterdam, Adam, Roberts, Thomas M., Mullins, Mar

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Year:

2008

Language:

english

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PDF, 913 KB

english, 2008

14

Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA Methylation in an Exogenous Promoter CpG Island

O'Hagan, Heather M., Mohammad, Helai P., Baylin, Stephen B., Lee, Jeannie T.

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Year:

2008

Language:

english

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PDF, 887 KB

english, 2008

15

Mutant Screen Distinguishes between Residues Necessary for Light-Signal Perception and Signal Transfer by Phytochrome B

Oka, Yoshito, Matsushita, Tomonao, Mochizuki, Nobuyoshi, Quail, Peter H., Nagatani, Akira, Copenhaver, Gregory P.

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Year:

2008

Language:

english

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PDF, 1.08 MB

english, 2008

16

An Sp1/Sp3 Binding Polymorphism Confers Methylation Protection

Boumber, Yanis A., Kondo, Yutaka, Chen, Xuqi, Shen, Lanlan, Guo, Yi, Tellez, Carmen, Estécio, Marcos R. H., Ahmed, Saira, Issa, Jean-Pierre J., Lee, Jeannie T.

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Year:

2008

Language:

english

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PDF, 501 KB

english, 2008

17

Divergent Evolution of CHD3 Proteins Resulted in MOM1 Refining Epigenetic Control in Vascular Plants

Čaikovski, Marian, Yokthongwattana, Chotika, Habu, Yoshiki, Nishimura, Taisuke, Mathieu, Olivier, Paszkowski, Jerzy, Kakutani, Tetsuji

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Year:

2008

Language:

english

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PDF, 331 KB

english, 2008

18

The Evolution of Epigenetic Regulators CTCF and BORIS/CTCFL in Amniotes

Hore, Timothy A., Deakin, Janine E., Marshall Graves, Jennifer A., Ferguson-Smith, Anne C.

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Year:

2008

Language:

english

File:

PDF, 967 KB

english, 2008

19

WDR55 Is a Nucleolar Modulator of Ribosomal RNA Synthesis, Cell Cycle Progression, and Teleost Organ Development

Iwanami, Norimasa, Higuchi, Tomokazu, Sasano, Yumi, Fujiwara, Toshinobu, Hoa, Vu Q., Okada, Minoru, Talukder, Sadiqur R., Kunimatsu, Sanae, Li, Jie, Saito, Fumi, Bhattacharya, Chitralekha, Matin, Anga

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Year:

2008

Language:

english

File:

PDF, 1.86 MB

english, 2008

20

Analysis of Transposon Interruptions Suggests Selection for L1 Elements on the X Chromosome

Abrusán, György, Giordano, Joti, Warburton, Peter E., Petrov, Dmitri A.

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Year:

2008

Language:

english

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PDF, 768 KB

english, 2008

21

Genic and Global Functions for Paf1C in Chromatin Modification and Gene Expression in Arabidopsis

Oh, Sookyung, Park, Sunchung, van Nocker, Steven, van Steensel, Bas

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Year:

2008

Language:

english

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PDF, 650 KB

english, 2008

22

A Tribute to Evgenii V. Ananiev, 1947–2008

Mirkin, Sergei M., Petrov, Dmitri A.

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Year:

2008

Language:

english

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PDF, 129 KB

english, 2008

23

Mitochondrial Targeting Adaptation of the Hominoid-Specific Glutamate Dehydrogenase Driven by Positive Darwinian Selection

Rosso, Lia, Marques, Ana C., Reichert, Andreas S., Kaessmann, Henrik, Przeworski, Molly

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Year:

2008

Language:

english

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PDF, 455 KB

english, 2008

24

Context Differences Reveal Insulator and Activator Functions of a Su(Hw) Binding Region

Soshnev, Alexey A., Li, Xingguo, Wehling, Misty D., Geyer, Pamela K., Akhtar, Asifa

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Year:

2008

Language:

english

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PDF, 768 KB

english, 2008

25

C. elegans Nucleostemin Is Required for Larval Growth and Germline Stem Cell Division

Kudron, Michelle M., Reinke, Valerie, Kim, Stuart K.

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Year:

2008

Language:

english

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PDF, 776 KB

english, 2008

26

Evolutionary Convergence on Highly-Conserved 3′ Intron Structures in Intron-Poor Eukaryotes and Insights into the Ancestral Eukaryotic Genome

Irimia, Manuel, Roy, Scott William, Trask, Barbara J.

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Year:

2008

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english

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PDF, 560 KB

english, 2008

27

Selective Constraints in Experimentally Defined Primate Regulatory Regions

Gaffney, Daniel J., Blekhman, Ran, Majewski, Jacek, Dermitzakis, Emmanouil T.

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Year:

2008

Language:

english

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PDF, 298 KB

english, 2008

28

Genome-Wide Scan on Total Serum IgE Levels Identifies FCER1A as Novel Susceptibility Locus

Weidinger, Stephan, Gieger, Christian, Rodriguez, Elke, Baurecht, Hansjörg, Mempel, Martin, Klopp, Norman, Gohlke, Henning, Wagenpfeil, Stefan, Ollert, Markus, Ring, Johannes, Behrendt, Heidrun, Heinr

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Year:

2008

Language:

english

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PDF, 254 KB

english, 2008

29

High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies

Srivatsan, Anjana, Han, Yi, Peng, Jianlan, Tehranchi, Ashley K., Gibbs, Richard, Wang, Jue D., Chen, Rui, Burkholder, William F.

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Year:

2008

Language:

english

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PDF, 714 KB

english, 2008

30

Efficient Genetic Method for Establishing Drosophila Cell Lines Unlocks the Potential to Create Lines of Specific Genotypes

Simcox, Amanda, Mitra, Sayan, Truesdell, Sharon, Paul, Litty, Chen, Ting, Butchar, Jonathan P., Justiniano, Steven, Hawley, R. Scott

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Year:

2008

Language:

english

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PDF, 840 KB

english, 2008

31

FHY1 Mediates Nuclear Import of the Light-Activated Phytochrome A Photoreceptor

Genoud, Thierry, Schweizer, Fabian, Tscheuschler, Anke, Debrieux, Dimitry, Casal, Jorge J., Schäfer, Eberhard, Hiltbrunner, Andreas, Fankhauser, Christian, Copenhaver, Gregory P.

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Year:

2008

Language:

english

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PDF, 586 KB

english, 2008

32

Patterns of Positive Selection in Six Mammalian Genomes

Kosiol, Carolin, Vinař, Tomáš, da Fonseca, Rute R., Hubisz, Melissa J., Bustamante, Carlos D., Nielsen, Rasmus, Siepel, Adam, Schierup, Mikkel H.

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Year:

2008

Language:

english

File:

PDF, 538 KB

english, 2008

33

Antagonism between DNA and H3K27 Methylation at the Imprinted Rasgrf1 Locus

Lindroth, Anders M., Park, Yoon Jung, McLean, Chelsea M., Dokshin, Gregoriy A., Persson, Jenna M., Herman, Herry, Pasini, Diego, Miró, Xavier, Donohoe, Mary E., Lee, Jeannie T., Helin, Kristian, Solow

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Year:

2008

Language:

english

File:

PDF, 492 KB

english, 2008

34

Linkage Disequilibrium-Based Quality Control for Large-Scale Genetic Studies

Scheet, Paul, Stephens, Matthew, Allison, David B.

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Year:

2008

Language:

english

File:

PDF, 407 KB

english, 2008

35

Off-Target Effects of Psychoactive Drugs Revealed by Genome-Wide Assays in Yeast

Ericson, Elke, Gebbia, Marinella, Heisler, Lawrence E., Wildenhain, Jan, Tyers, Mike, Giaever, Guri, Nislow, Corey, Snyder, Michael

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Year:

2008

Language:

english

File:

PDF, 561 KB

english, 2008

36

E2F and p53 Induce Apoptosis Independently during Drosophila Development but Intersect in the Context of DNA Damage

Moon, Nam-Sung, Di Stefano, Luisa, Morris, Erick J., Patel, Reena, White, Kristin, Dyson, Nicholas J., Perrimon, Norbert

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Year:

2008

Language:

english

File:

PDF, 2.29 MB

english, 2008

37

Genetic Evidence of Serum Phosphate-Independent Functions of FGF-23 on Bone

Sitara, Despina, Kim, Somi, Razzaque, Mohammed S., Bergwitz, Clemens, Taguchi, Takashi, Schüler, Christiane, Erben, Reinhold G., Lanske, Beate, Cox, Gregory A.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.91 MB

english, 2008