Volume 5; Issue 6

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PLoS Genetics
Volume 5; Issue 6

PLoS Genetics

Volume 5; Issue 6

1

The Role of Geography in Human Adaptation

Coop, Graham, Pickrell, Joseph K., Novembre, John, Kudaravalli, Sridhar, Li, Jun, Absher, Devin, Myers, Richard M., Cavalli-Sforza, Luigi Luca, Feldman, Marcus W., Pritchard, Jonathan K., Schierup, Mi

Journal:

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

2

Asymmetric Strand Segregation: Epigenetic Costs of Genetic Fidelity?

Genereux, Diane P., Reik, Wolf

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Year:

2009

Language:

english

File:

PDF, 275 KB

english, 2009

3

The Impact of Divergence Time on the Nature of Population Structure: An Example from Iceland

Price, Alkes L., Helgason, Agnar, Palsson, Snaebjorn, Stefansson, Hreinn, St. Clair, David, Andreassen, Ole A., Reich, David, Kong, Augustine, Stefansson, Kari, McVean, Gil

Journal:

Year:

2009

Language:

english

File:

PDF, 861 KB

english, 2009

4

Genome-Wide uH2A Localization Analysis Highlights Bmi1-Dependent Deposition of the Mark at Repressed Genes

Kallin, Eric M., Cao, Ru, Jothi, Raja, Xia, Kai, Cui, Kairong, Zhao, Keji, Zhang, Yi, Schübeler, Dirk

Journal:

Year:

2009

Language:

english

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PDF, 584 KB

english, 2009

5

Avoiding Dangerous Missense: Thermophiles Display Especially Low Mutation Rates

Drake, John W., Casadesús, Josep

Journal:

Year:

2009

Language:

english

File:

PDF, 127 KB

english, 2009

6

Meta-Analysis of 28,141 Individuals Identifies Common Variants within Five New Loci That Influence Uric Acid Concentrations

Kolz, Melanie, Johnson, Toby, Sanna, Serena, Teumer, Alexander, Vitart, Veronique, Perola, Markus, Mangino, Massimo, Albrecht, Eva, Wallace, Chris, Farrall, Martin, Johansson, Åsa, Nyholt, Dale R., Au

Journal:

Year:

2009

Language:

english

File:

PDF, 488 KB

english, 2009

7

Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in Drosophila

Hansen, Kasper Daniel, Lareau, Liana F., Blanchette, Marco, Green, Richard E., Meng, Qi, Rehwinkel, Jan, Gallusser, Fabian L., Izaurralde, Elisa, Rio, Donald C., Dudoit, Sandrine, Brenner, Steven E.,

Journal:

Year:

2009

Language:

english

File:

PDF, 541 KB

english, 2009

8

A Tether for Woronin Body Inheritance Is Associated with Evolutionary Variation in Organelle Positioning

Ng, Seng Kah, Liu, Fangfang, Lai, Julian, Low, Wilson, Jedd, Gregory, Dutcher, Susan K.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.94 MB

english, 2009

9

Cytoplasmic Streaming in Neurospora: Disperse the Plug To Increase the Flow?

Plamann, Michael, Dutcher, Susan K.

Journal:

Year:

2009

Language:

english

File:

PDF, 119 KB

english, 2009

10

The Mysteries of Chromosome Evolution in Gibbons: Methylation Is a Prime Suspect

Brown, Judith D., O'Neill, Rachel J., Ferguson-Smith, Anne C.

Journal:

Year:

2009

Language:

english

File:

PDF, 117 KB

english, 2009

11

Complex Adaptations Can Drive the Evolution of the Capacitor [PSI+], Even with Realistic Rates of Yeast Sex

Griswold, Cortland K., Masel, Joanna, Úbeda, Francisco

Journal:

Year:

2009

Language:

english

File:

PDF, 375 KB

english, 2009

12

Evolution of Mutational Robustness in the Yeast Genome: A Link to Essential Genes and Meiotic Recombination Hotspots

Keller, Philipp J., Knop, Michael, Malik, Harmit S.

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Year:

2009

Language:

english

File:

PDF, 2.04 MB

english, 2009

13

Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions

Raychaudhuri, Soumya, Plenge, Robert M., Rossin, Elizabeth J., Ng, Aylwin C. Y., Purcell, Shaun M., Sklar, Pamela, Scolnick, Edward M., Xavier, Ramnik J., Altshuler, David, Daly, Mark J., Storey, John

Journal:

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

14

A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen

Ravi, Dashnamoorthy, Wiles, Amy M., Bhavani, Selvaraj, Ruan, Jianhua, Leder, Philip, Bishop, Alexander J. R., Kiger, Amy

Journal:

Year:

2009

Language:

english

File:

PDF, 1.65 MB

english, 2009

15

The Level of the Transcription Factor Pax6 Is Essential for Controlling the Balance between Neural Stem Cell Self-Renewal and Neurogenesis

Sansom, Stephen N., Griffiths, Dean S., Faedo, Andrea, Kleinjan, Dirk-Jan, Ruan, Youlin, Smith, James, van Heyningen, Veronica, Rubenstein, John L., Livesey, Frederick J., Hébert, Jean M.

Journal:

Year:

2009

Language:

english

File:

PDF, 4.59 MB

english, 2009

16

Genetic Variation of Promoter Sequence Modulates XBP1 Expression and Genetic Risk for Vitiligo

Ren, Yunqing, Yang, Sen, Xu, Shengxin, Gao, Min, Huang, Wei, Gao, Tianwen, Fang, Qiaoyun, Quan, Cheng, Zhang, Chi, Sun, Liangdan, Liang, Yanhua, Han, Jianwen, Wang, Zhimin, Zhang, Fengyu, Zhou, Youwen

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Year:

2009

Language:

english

File:

PDF, 245 KB

english, 2009

17

Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening

D'haene, Barbara, Attanasio, Catia, Beysen, Diane, Dostie, Josée, Lemire, Edmond, Bouchard, Philippe, Field, Michael, Jones, Kristie, Lorenz, Birgit, Menten, Björn, Buysse, Karen, Pattyn, Filip, Fried

Journal:

Year:

2009

Language:

english

File:

PDF, 646 KB

english, 2009

18

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

Howie, Bryan N., Donnelly, Peter, Marchini, Jonathan, Schork, Nicholas J.

Journal:

Year:

2009

Language:

english

File:

PDF, 895 KB

english, 2009

19

Genome-Wide Analyses of Exonic Copy Number Variants in a Family-Based Study Point to Novel Autism Susceptibility Genes

Bucan, Maja, Abrahams, Brett S., Wang, Kai, Glessner, Joseph T., Herman, Edward I., Sonnenblick, Lisa I., Alvarez Retuerto, Ana I., Imielinski, Marcin, Hadley, Dexter, Bradfield, Jonathan P., Kim, Cec

Journal:

Year:

2009

Language:

english

File:

PDF, 583 KB

english, 2009

20

Change of Gene Structure and Function by Non-Homologous End-Joining, Homologous Recombination, and Transposition of DNA

Goettel, Wolfgang, Messing, Joachim, Grelon, Mathilde

Journal:

Year:

2009

Language:

english

File:

PDF, 744 KB

english, 2009

21

Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution

Carbone, Lucia, Harris, R. Alan, Vessere, Gery M., Mootnick, Alan R., Humphray, Sean, Rogers, Jane, Kim, Sung K., Wall, Jeffrey D., Martin, David, Jurka, Jerzy, Milosavljevic, Aleksandar, de Jong, Pie

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Year:

2009

Language:

english

File:

PDF, 836 KB

english, 2009

22

Comprehensive Linkage and Association Analyses Identify Haplotype, Near to the TNFSF15 Gene, Significantly Associated with Spondyloarthritis

Zinovieva, Elena, Bourgain, Catherine, Kadi, Amir, Letourneur, Franck, Izac, Brigitte, Said-Nahal, Roula, Lebrun, Nicolas, Cagnard, Nicolas, Vigier, Agathe, Jacques, Sébastien, Miceli-Richard, Corinne

Journal:

Year:

2009

Language:

english

File:

PDF, 506 KB

english, 2009

23

Caenorhabditis elegans Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits

Coolon, Joseph D., Jones, Kenneth L., Todd, Timothy C., Carr, Bryanua C., Herman, Michael A., Kim, Stuart K.

Journal:

Year:

2009

Language:

english

File:

PDF, 458 KB

english, 2009

24

Systematic Identification of Balanced Transposition Polymorphisms in Saccharomyces cerevisiae

Faddah, Dina A., Ganko, Eric W., McCoach, Caroline, Pickrell, Joseph K., Hanlon, Sean E., Mann, Frederick G., Mieczkowska, Joanna O., Jones, Corbin D., Lieb, Jason D., Vision, Todd J., Snyder, Michael

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Year:

2009

Language:

english

File:

PDF, 1.68 MB

english, 2009

25

A Mechanistic Basis for the Coordinated Regulation of Pharyngeal Morphogenesis in Caenorhabditis elegans by LIN-35/Rb and UBC-18–ARI-1

Mani, Kumaran, Fay, David S., Kim, Stuart K.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.16 MB

english, 2009

26

Peroxiredoxin Tsa1 Is the Key Peroxidase Suppressing Genome Instability and Protecting against Cell Death in Saccharomyces cerevisiae

Iraqui, Ismail, Kienda, Guy, Soeur, Jérémie, Faye, Gérard, Baldacci, Giuseppe, Kolodner, Richard D., Huang, Meng-Er, Myung, Kyungjae

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Year:

2009

Language:

english

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PDF, 833 KB

english, 2009

27

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

Johannes, Frank, Porcher, Emmanuelle, Teixeira, Felipe K., Saliba-Colombani, Vera, Simon, Matthieu, Agier, Nicolas, Bulski, Agnès, Albuisson, Juliette, Heredia, Fabiana, Audigier, Pascal, Bouchez, Dav

Journal:

Year:

2009

Language:

english

File:

PDF, 771 KB

english, 2009

28

Uptake of the Necrotic Serpin in Drosophila melanogaster via the Lipophorin Receptor-1

Soukup, Sandra Fausia, Culi, Joaquim, Gubb, David, Rulifson, Eric

Journal:

Year:

2009

Language:

english

File:

PDF, 7.07 MB

english, 2009

29

An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans

Meissner, Barbara, Warner, Adam, Wong, Kim, Dube, Nicholas, Lorch, Adam, McKay, Sheldon J., Khattra, Jaswinder, Rogalski, Teresa, Somasiri, Aruna, Chaudhry, Iasha, Fox, Rebecca M., Miller, David M., B

Journal:

Year:

2009

Language:

english

File:

PDF, 1.34 MB

english, 2009

30

Pervasive Natural Selection in the Drosophila Genome?

Sella, Guy, Petrov, Dmitri A., Przeworski, Molly, Andolfatto, Peter, Nachman, Michael W.

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Year:

2009

Language:

english

File:

PDF, 647 KB

english, 2009

31

In Vivo Generation of Neurotoxic Prion Protein: Role for Hsp70 in Accumulation of Misfolded Isoforms

Fernandez-Funez, Pedro, Casas-Tinto, Sergio, Zhang, Yan, Gómez-Velazquez, Melisa, Morales-Garza, Marco A., Cepeda-Nieto, Ana C., Castilla, Joaquín, Soto, Claudio, Rincon-Limas, Diego E., Orr, Harry

Journal:

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

32

Differential Regulation of Horizontally Acquired and Core Genome Genes by the Bacterial Modulator H-NS

Baños, Rosa C., Vivero, Aitziber, Aznar, Sonia, García, Jesús, Pons, Miquel, Madrid, Cristina, Juárez, Antonio, Casadesús, Josep

Journal:

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

33

A Genome-Wide Screen for Regulators of TORC1 in Response to Amino Acid Starvation Reveals a Conserved Npr2/3 Complex

Neklesa, Taavi K., Davis, Ronald W., Biggins, Sue

Journal:

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

34

The Maternal-Effect Gene cellular island Encodes Aurora B Kinase and Is Essential for Furrow Formation in the Early Zebrafish Embryo

Yabe, Taijiro, Ge, Xiaoyan, Lindeman, Robin, Nair, Sreelaja, Runke, Greg, Mullins, Mary C., Pelegri, Francisco, Talbot, William S.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

35

NRXN3 Is a Novel Locus for Waist Circumference: A Genome-Wide Association Study from the CHARGE Consortium

Heard-Costa, Nancy L., Zillikens, M. Carola, Monda, Keri L., Johansson, Åsa, Harris, Tamara B., Fu, Mao, Haritunians, Talin, Feitosa, Mary F., Aspelund, Thor, Eiriksdottir, Gudny, Garcia, Melissa, Lau

Journal:

Year:

2009

Language:

english

File:

PDF, 202 KB

english, 2009

36

Caenorhabditis elegans Protein Arginine Methyltransferase PRMT-5 Negatively Regulates DNA Damage-Induced Apoptosis

Yang, Mei, Sun, Jianwei, Sun, Xiaojuan, Shen, Qinfang, Gao, Zhiyang, Yang, Chonglin, Kim, Stuart K.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.37 MB

english, 2009

37

Forging Links between Human Mental Retardation–Associated CNVs and Mouse Gene Knockout Models

Webber, Caleb, Hehir-Kwa, Jayne Y., Nguyen, Duc-Quang, de Vries, Bert B. A., Veltman, Joris A., Ponting, Chris P., Dermitzakis, Emmanouil T.

Journal:

Year:

2009

Language:

english

File:

PDF, 744 KB

english, 2009

38

Telomere Recombination Accelerates Cellular Aging in Saccharomyces cerevisiae

Chen, Xiao-Fen, Meng, Fei-Long, Zhou, Jin-Qiu, Biggins, Sue

Journal:

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

39

Sensitive Detection of Chromosomal Segments of Distinct Ancestry in Admixed Populations

Price, Alkes L., Tandon, Arti, Patterson, Nick, Barnes, Kathleen C., Rafaels, Nicholas, Ruczinski, Ingo, Beaty, Terri H., Mathias, Rasika, Reich, David, Myers, Simon, Pritchard, Jonathan K.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.28 MB

english, 2009

40

Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens

Wright, Dominic, Boije, Henrik, Meadows, Jennifer R. S., Bed'hom, Bertrand, Gourichon, David, Vieaud, Agathe, Tixier-Boichard, Michèle, Rubin, Carl-Johan, Imsland, Freyja, Hallböök, Finn, Andersson, L

Journal:

Year:

2009

Language:

english

File:

PDF, 607 KB

english, 2009

41

Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution

Lindgren, Cecilia M., Heid, Iris M., Randall, Joshua C., Lamina, Claudia, Steinthorsdottir, Valgerdur, Qi, Lu, Speliotes, Elizabeth K., Thorleifsson, Gudmar, Willer, Cristen J., Herrera, Blanca M., Ja

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Year:

2009

Language:

english

File:

PDF, 583 KB

english, 2009

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