Volume 8; Issue 7

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PLoS Genetics
Volume 8; Issue 7

PLoS Genetics

Volume 8; Issue 7

1

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels,

Journal:

Year:

2012

Language:

english

File:

PDF, 3.27 MB

english, 2012

2

Cellular Variability of RpoS Expression Underlies Subpopulation Activation of an Integrative and Conjugative Element

Miyazaki, Ryo, Minoia, Marco, Pradervand, Nicolas, Sulser, Sandra, Reinhard, Friedrich, van der Meer, Jan Roelof, Hughes, Diarmaid

Journal:

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

3

Differential Impact of the HEN1 Homolog HENN-1 on 21U and 26G RNAs in the Germline of Caenorhabditis elegans

Kamminga, Leonie M., van Wolfswinkel, Josien C., Luteijn, Maartje J., Kaaij, Lucas J. T., Bagijn, Marloes P., Sapetschnig, Alexandra, Miska, Eric A., Berezikov, Eugene, Ketting, René F., Kim, Stuart K

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Year:

2012

Language:

english

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PDF, 1016 KB

english, 2012

4

Genetic Variants in REC8, RNF212, and PRDM9 Influence Male Recombination in Cattle

Sandor, Cynthia, Li, Wanbo, Coppieters, Wouter, Druet, Tom, Charlier, Carole, Georges, Michel, Paigen, Kenneth

Journal:

Year:

2012

Language:

english

File:

PDF, 822 KB

english, 2012

5

Let-7b/c Enhance the Stability of a Tissue-Specific mRNA during Mammalian Organogenesis as Part of a Feedback Loop Involving KSRP

Repetto, Emanuela, Briata, Paola, Kuziner, Nathalie, Harfe, Brian D., McManus, Michael T., Gherzi, Roberto, Rosenfeld, Michael G., Trabucchi, Michele, Kumar, T. Rajendra

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Year:

2012

Language:

english

File:

PDF, 3.35 MB

english, 2012

6

DNA Methyltransferases Are Required to Induce Heterochromatic Re-Replication in Arabidopsis

Stroud, Hume, Hale, Christopher J., Feng, Suhua, Caro, Elena, Jacob, Yannick, Michaels, Scott D., Jacobsen, Steven E., Kakutani, Tetsuji

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Year:

2012

Language:

english

File:

PDF, 530 KB

english, 2012

7

A Regulatory Loop Involving PAX6, MITF, and WNT Signaling Controls Retinal Pigment Epithelium Development

Bharti, Kapil, Gasper, Melanie, Ou, Jingxing, Brucato, Martha, Clore-Gronenborn, Katharina, Pickel, James, Arnheiter, Heinz, van Heyningen, Veronica

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Year:

2012

Language:

english

File:

PDF, 10.92 MB

english, 2012

8

The Chicken Frizzle Feather Is Due to an α-Keratin (KRT75) Mutation That Causes a Defective Rachis

Ng, Chen Siang, Wu, Ping, Foley, John, Foley, Anne, McDonald, Merry-Lynn, Juan, Wen-Tau, Huang, Chih-Jen, Lai, Yu-Ting, Lo, Wen-Sui, Chen, Chih-Feng, Leal, Suzanne M., Zhang, Huanmin, Widelitz, Randal

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Year:

2012

Language:

english

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PDF, 7.84 MB

english, 2012

9

Histone H2B Monoubiquitination Facilitates the Rapid Modulation of Gene Expression during Arabidopsis Photomorphogenesis

Bourbousse, Clara, Ahmed, Ikhlak, Roudier, François, Zabulon, Gérald, Blondet, Eddy, Balzergue, Sandrine, Colot, Vincent, Bowler, Chris, Barneche, Fredy, Dean, Caroline

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2012

Language:

english

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PDF, 2.32 MB

english, 2012

10

GRHL3/GET1 and Trithorax Group Members Collaborate to Activate the Epidermal Progenitor Differentiation Program

Hopkin, Amelia Soto, Gordon, William, Klein, Rachel Herndon, Espitia, Francisco, Daily, Kenneth, Zeller, Michael, Baldi, Pierre, Andersen, Bogi, Bickmore, Wendy A.

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Year:

2012

Language:

english

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PDF, 986 KB

english, 2012

11

Unmet Expectations: miR-34 Plays No Role in p53-Mediated Tumor Suppression In Vivo

Jain, Abhinav K, Barton, Michelle Craig, Grimes, H. Leighton

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Year:

2012

Language:

english

File:

PDF, 83 KB

english, 2012

12

The Yeast Rab GTPase Ypt1 Modulates Unfolded Protein Response Dynamics by Regulating the Stability of HAC1 RNA

Tsvetanova, Nikoleta G., Riordan, Daniel P., Brown, Patrick O., Jayaseelan, Sabarinath

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Year:

2012

Language:

english

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PDF, 545 KB

english, 2012

13

Recent Loss of Self-Incompatibility by Degradation of the Male Component in Allotetraploid Arabidopsis kamchatica

Tsuchimatsu, Takashi, Kaiser, Pascal, Yew, Chow-Lih, Bachelier, Julien B., Shimizu, Kentaro K., Mauricio, Rodney

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Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

14

Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression

Kutter, Claudia, Watt, Stephen, Stefflova, Klara, Wilson, Michael D., Goncalves, Angela, Ponting, Chris P., Odom, Duncan T., Marques, Ana C., Bartel, David P.

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Year:

2012

Language:

english

File:

PDF, 927 KB

english, 2012

15

Pregnancy-Induced Noncoding RNA (PINC) Associates with Polycomb Repressive Complex 2 and Regulates Mammary Epithelial Differentiation

Shore, Amy N., Kabotyanski, Elena B., Roarty, Kevin, Smith, Martin A., Zhang, Yiqun, Creighton, Chad J., Dinger, Marcel E., Rosen, Jeffrey M., Ferguson-Smith, Anne C.

Journal:

Year:

2012

Language:

english

File:

PDF, 4.02 MB

english, 2012

16

OSD1 Promotes Meiotic Progression via APC/C Inhibition and Forms a Regulatory Network with TDM and CYCA1;2/TAM

Cromer, Laurence, Heyman, Jefri, Touati, Sandra, Harashima, Hirofumi, Araou, Emilie, Girard, Chloe, Horlow, Christine, Wassmann, Katja, Schnittger, Arp, De Veylder, Lieven, Mercier, Raphael, Pawlowski

Journal:

Year:

2012

Language:

english

File:

PDF, 2.56 MB

english, 2012

17

FANCJ/BACH1 Acetylation at Lysine 1249 Regulates the DNA Damage Response

Xie, Jenny, Peng, Min, Guillemette, Shawna, Quan, Steven, Maniatis, Stephanie, Wu, Yuliang, Venkatesh, Aditya, Shaffer, Scott A., Brosh, Robert M., Cantor, Sharon B., Plon, Sharon E.

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Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

18

The Arabidopsis HEI10 Is a New ZMM Protein Related to Zip3

Chelysheva, Liudmila, Vezon, Daniel, Chambon, Aurélie, Gendrot, Ghislaine, Pereira, Lucie, Lemhemdi, Afef, Vrielynck, Nathalie, Le Guin, Sylvia, Novatchkova, Maria, Grelon, Mathilde, Franklin, F. Chri

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Year:

2012

Language:

english

File:

PDF, 2.14 MB

english, 2012

19

A Genome-Wide Association Meta-Analysis of Circulating Sex Hormone–Binding Globulin Reveals Multiple Loci Implicated in Sex Steroid Hormone Regulation

Coviello, Andrea D., Haring, Robin, Wellons, Melissa, Vaidya, Dhananjay, Lehtimäki, Terho, Keildson, Sarah, Lunetta, Kathryn L., He, Chunyan, Fornage, Myriam, Lagou, Vasiliki, Mangino, Massimo, Onland

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Year:

2012

Language:

english

File:

PDF, 651 KB

english, 2012

20

The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism

Bayram, Özgür, Bayram, Özlem Sarikaya, Ahmed, Yasar Luqman, Maruyama, Jun-ichi, Valerius, Oliver, Rizzoli, Silvio O., Ficner, Ralf, Irniger, Stefan, Braus, Gerhard H., Madhani, Hiten D.

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Year:

2012

Language:

english

File:

PDF, 3.87 MB

english, 2012

21

Functional Evolution of Mammalian Odorant Receptors

Adipietro, Kaylin A., Mainland, Joel D., Matsunami, Hiroaki, Zhang, Jianzhi

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Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

22

Reversal of PCNA Ubiquitylation by Ubp10 in Saccharomyces cerevisiae

Gallego-Sánchez, Alfonso, Andrés, Sonia, Conde, Francisco, San-Segundo, Pedro A., Bueno, Avelino, Maizels, Nancy

Journal:

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

23

Brain-Specific Rescue of Clock Reveals System-Driven Transcriptional Rhythms in Peripheral Tissue

Hughes, Michael E., Hong, Hee-Kyung, Chong, Jason L., Indacochea, Alejandra A., Lee, Samuel S., Han, Michael, Takahashi, Joseph S., Hogenesch, John B., Kramer, Achim

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Year:

2012

Language:

english

File:

PDF, 2.80 MB

english, 2012

24

The Caenorhabditis elegans Gene mfap-1 Encodes a Nuclear Protein That Affects Alternative Splicing

Ma, Long, Gao, Xiaoyang, Luo, Jintao, Huang, Liange, Teng, Yanling, Horvitz, H. Robert, Chisholm, Andrew D.

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Year:

2012

Language:

english

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PDF, 692 KB

english, 2012

25

Gene Conversion Occurs within the Mating-Type Locus of Cryptococcus neoformans during Sexual Reproduction

Sun, Sheng, Hsueh, Yen-Ping, Heitman, Joseph, Copenhaver, Gregory P.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.19 MB

english, 2012

26

RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors

Häuser, Roman, Pech, Markus, Kijek, Jaroslaw, Yamamoto, Hiroshi, Titz, Björn, Naeve, Florian, Tovchigrechko, Andrey, Yamamoto, Kaori, Szaflarski, Witold, Takeuchi, Nono, Stellberger, Thorsten, Diefenb

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Year:

2012

Language:

english

File:

PDF, 872 KB

english, 2012

27

Phosphorylation-Dependent Interactions between Crb2 and Chk1 Are Essential for DNA Damage Checkpoint

Qu, Meng, Yang, Bing, Tao, Li, Yates, John R., Russell, Paul, Dong, Meng-Qiu, Du, Li-Lin, Copenhaver, Gregory P.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.29 MB

english, 2012

28

Identification of Chromatin-Associated Regulators of MSL Complex Targeting in Drosophila Dosage Compensation

Larschan, Erica, Soruco, Marcela M. L., Lee, Ok-Kyung, Peng, Shouyong, Bishop, Eric, Chery, Jessica, Goebel, Karen, Feng, Jessica, Park, Peter J., Kuroda, Mitzi I., Brehm, Alexander

Journal:

Year:

2012

Language:

english

File:

PDF, 900 KB

english, 2012

29

CED-10/Rac1 Regulates Endocytic Recycling through the RAB-5 GAP TBC-2

Sun, Lin, Liu, Ou, Desai, Jigar, Karbassi, Farhad, Sylvain, Marc-André, Shi, Anbing, Zhou, Zheng, Rocheleau, Christian E., Grant, Barth D., Donaldson, Julie G.

Journal:

Year:

2012

Language:

english

File:

PDF, 4.45 MB

english, 2012

30

A Key Role for Chd1 in Histone H3 Dynamics at the 3′ Ends of Long Genes in Yeast

Radman-Livaja, Marta, Quan, Tiffani K., Valenzuela, Lourdes, Armstrong, Jennifer A., van Welsem, Tibor, Kim, TaeSoo, Lee, Laura J., Buratowski, Stephen, van Leeuwen, Fred, Rando, Oliver J., Hartzog, G

Journal:

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

31

Genomic Data Reveal a Complex Making of Humans

Alves, Isabel, Šrámková Hanulová, Anna, Foll, Matthieu, Excoffier, Laurent, Schierup, Mikkel H.

Journal:

Year:

2012

Language:

english

File:

PDF, 696 KB

english, 2012

32

F-Box Protein Specificity for G1 Cyclins Is Dictated by Subcellular Localization

Landry, Benjamin D., Doyle, John P., Toczyski, David P., Benanti, Jennifer A., Copenhaver, Gregory P.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

33

Oocyte Family Trees: Old Branches or New Stems?

Woods, Dori C., Telfer, Evelyn E., Tilly, Jonathan L., Barsh, Gregory S.

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Year:

2012

Language:

english

File:

PDF, 234 KB

english, 2012

34

Evidence of Inbreeding Depression on Human Height

McQuillan, Ruth, Eklund, Niina, Pirastu, Nicola, Kuningas, Maris, McEvoy, Brian P., Esko, Tõnu, Corre, Tanguy, Davies, Gail, Kaakinen, Marika, Lyytikäinen, Leo-Pekka, Kristiansson, Kati, Havulinna, Ak

Journal:

Year:

2012

Language:

english

File:

PDF, 384 KB

english, 2012

35

Detecting Individual Sites Subject to Episodic Diversifying Selection

Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L., Malik, Harmit S.

Journal:

Year:

2012

Language:

english

File:

PDF, 355 KB

english, 2012

36

Loss of ATRX, Genome Instability, and an Altered DNA Damage Response Are Hallmarks of the Alternative Lengthening of Telomeres Pathway

Lovejoy, Courtney A., Li, Wendi, Reisenweber, Steven, Thongthip, Supawat, Bruno, Joanne, de Lange, Titia, De, Saurav, Petrini, John H. J., Sung, Patricia A., Jasin, Maria, Rosenbluh, Joseph, Zwang, Ya

Journal:

Year:

2012

Language:

english

File:

PDF, 5.29 MB

english, 2012

37

Histone H2A Mono-Ubiquitination Is a Crucial Step to Mediate PRC1-Dependent Repression of Developmental Genes to Maintain ES Cell Identity

Endoh, Mitsuhiro, Endo, Takaho A., Endoh, Tamie, Isono, Kyo-ichi, Sharif, Jafar, Ohara, Osamu, Toyoda, Tetsuro, Ito, Takashi, Eskeland, Ragnhild, Bickmore, Wendy A., Vidal, Miguel, Bernstein, Bradley

Journal:

Year:

2012

Language:

english

File:

PDF, 511 KB

english, 2012

38

Intact p53-Dependent Responses in miR-34–Deficient Mice

Concepcion, Carla P., Han, Yoon-Chi, Mu, Ping, Bonetti, Ciro, Yao, Evelyn, D'Andrea, Aleco, Vidigal, Joana A., Maughan, William P., Ogrodowski, Paul, Ventura, Andrea, Grimes, H. Leighton

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Year:

2012

Language:

english

File:

PDF, 1.66 MB

english, 2012

39

A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)

Kamiya, Takashi, Kai, Wataru, Tasumi, Satoshi, Oka, Ayumi, Matsunaga, Takayoshi, Mizuno, Naoki, Fujita, Masashi, Suetake, Hiroaki, Suzuki, Shigenori, Hosoya, Sho, Tohari, Sumanty, Brenner, Sydney, Miy

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Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

40

TDP-1/TDP-43 Regulates Stress Signaling and Age-Dependent Proteotoxicity in Caenorhabditis elegans

Vaccaro, Alexandra, Tauffenberger, Arnaud, Ash, Peter E. A., Carlomagno, Yari, Petrucelli, Leonard, Parker, J. Alex, Lu, Bingwei

Journal:

Year:

2012

Language:

english

File:

PDF, 2.88 MB

english, 2012

41

The Role of Rice HEI10 in the Formation of Meiotic Crossovers

Wang, Kejian, Wang, Mo, Tang, Ding, Shen, Yi, Miao, Chunbo, Hu, Qing, Lu, Tiegang, Cheng, Zhukuan, Franklin, F. Chris H.

Journal:

Year:

2012

Language:

english

File:

PDF, 7.73 MB

english, 2012

42

Guidelines for Genome-Wide Association Studies

Barsh, Gregory S., Copenhaver, Gregory P., Gibson, Greg, Williams, Scott M.

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Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

43

Balancing Selection at the Tomato RCR3 Guardee Gene Family Maintains Variation in Strength of Pathogen Defense

Hörger, Anja C., Ilyas, Muhammad, Stephan, Wolfgang, Tellier, Aurélien, van der Hoorn, Renier A. L., Rose, Laura E., Mauricio, Rodney

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Year:

2012

Language:

english

File:

PDF, 516 KB

english, 2012

44

The Secreted Immunoglobulin Domain Proteins ZIG-5 and ZIG-8 Cooperate with L1CAM/SAX-7 to Maintain Nervous System Integrity

Bénard, Claire Y., Blanchette, Cassandra, Recio, Janine, Hobert, Oliver, Chisholm, Andrew D.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.64 MB

english, 2012

45

Genome-Wide Association Analysis in Asthma Subjects Identifies SPATS2L as a Novel Bronchodilator Response Gene

Himes, Blanca E., Jiang, Xiaofeng, Hu, Ruoxi, Wu, Ann C., Lasky-Su, Jessica A., Klanderman, Barbara J., Ziniti, John, Senter-Sylvia, Jody, Lima, John J., Irvin, Charles G., Peters, Stephen P., Meyers,

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Year:

2012

Language:

english

File:

PDF, 444 KB

english, 2012

46

The Three Faces of Riboviral Spontaneous Mutation: Spectrum, Mode of Genome Replication, and Mutation Rate

García-Villada, Libertad, Drake, John W., Hughes, Diarmaid

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Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

47

Drosophila Fatty Acid Transport Protein Regulates Rhodopsin-1 Metabolism and Is Required for Photoreceptor Neuron Survival

Dourlen, Pierre, Bertin, Benjamin, Chatelain, Gilles, Robin, Marion, Napoletano, Francesco, Roux, Michel J., Mollereau, Bertrand, Lu, Bingwei

Journal:

Year:

2012

Language:

english

File:

PDF, 6.35 MB

english, 2012

48

Meta-Analysis of Genome-Wide Scans for Total Body BMD in Children and Adults Reveals Allelic Heterogeneity and Age-Specific Effects at the WNT16 Locus

Medina-Gomez, Carolina, Kemp, John P., Estrada, Karol, Eriksson, Joel, Liu, Jeff, Reppe, Sjur, Evans, David M., Heppe, Denise H. M., Vandenput, Liesbeth, Herrera, Lizbeth, Ring, Susan M., Kruithof, Cl

Journal:

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

49

GWAS Identifies Novel Susceptibility Loci on 6p21.32 and 21q21.3 for Hepatocellular Carcinoma in Chronic Hepatitis B Virus Carriers

Li, Shengping, Qian, Ji, Yang, Yuan, Zhao, Wanting, Dai, Juncheng, Bei, Jin-Xin, Foo, Jia Nee, McLaren, Paul J., Li, Zhiqiang, Yang, Jingmin, Shen, Feng, Liu, Li, Yang, Jiamei, Li, Shuhong, Pan, Shand

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Year:

2012

Language:

english

File:

PDF, 311 KB

english, 2012

50

Allelic Heterogeneity and Trade-Off Shape Natural Variation for Response to Soil Micronutrient

Poormohammad Kiani, Seifollah, Trontin, Charlotte, Andreatta, Matthew, Simon, Matthieu, Robert, Thierry, Salt, David E., Loudet, Olivier, Mauricio, Rodney

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Year:

2012

Language:

english

File:

PDF, 581 KB

english, 2012

51

Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability

Aso, Yoshinori, Herb, Andrea, Ogueta, Maite, Siwanowicz, Igor, Templier, Thomas, Friedrich, Anja B., Ito, Kei, Scholz, Henrike, Tanimoto, Hiromu, Rulifson, Eric

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Year:

2012

Language:

english

File:

PDF, 5.20 MB

english, 2012

52

WNT16 Influences Bone Mineral Density, Cortical Bone Thickness, Bone Strength, and Osteoporotic Fracture Risk

Zheng, Hou-Feng, Tobias, Jon H., Duncan, Emma, Evans, David M., Eriksson, Joel, Paternoster, Lavinia, Yerges-Armstrong, Laura M., Lehtimäki, Terho, Bergström, Ulrica, Kähönen, Mika, Leo, Paul J., Rait

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Year:

2012

Language:

english

File:

PDF, 786 KB

english, 2012

53

Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma

Sun, Yu, Corcoran, Pádraic, Menkis, Audrius, Whittle, Carrie A., Andersson, Siv G. E., Johannesson, Hanna, Heitman, Joseph

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Year:

2012

Language:

english

File:

PDF, 1.83 MB

english, 2012

54

The SCFDia2 Ubiquitin E3 Ligase Ubiquitylates Sir4 and Functions in Transcriptional Silencing

Burgess, Rebecca J., Zhou, Hui, Han, Junhong, Li, Qing, Zhang, Zhiguo, Kirchmaier, Ann L.

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Year:

2012

Language:

english

File:

PDF, 1.33 MB

english, 2012

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