Volume 15; Issue 4

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Protein Science
Volume 15; Issue 4

Protein Science

Volume 15; Issue 4

1

Novel surfactant mixtures for NMR spectroscopy of encapsulated proteins dissolved

Ronald W. Peterson, Maxim S. Pometun, Zhengshuang Shi, A. Joshua Wand

Journal:

Protein Science

Year:

2006

File:

PDF, 36 KB

2006

2

Bruno H. Zimm (1920–2005)

Russell F. Doolittle

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 111 KB

english, 2006

3

Conformational changes of the glucocorticoid receptor ligand binding domain induced by ligand and cofactor binding, and the location of cofactor binding sites determined by hydrogen/deuterium exchange mass spectrometry

Lee Frego, Walter Davidson

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 563 KB

english, 2006

4

New approaches to high-throughput structure characterization of SH3 complexes: The example of Myosin-3 and Myosin-5 SH3 domains from S. cerevisiae

Valeria Musi, Berry Birdsall, Gregorio Fernandez-Ballester, Remo Guerrini, Severo Salvatori, Luis Serrano, Annalisa Pastore

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 591 KB

english, 2006

5

Identification of correct regions in protein models using structural, alignment, and consensus information

Björn Wallner, Arne Elofsson

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 819 KB

english, 2006

6

Solvation of the folding-transition state in Pseudomonas aeruginosa azurin is modulated by metal

Corey J. Wilson, David Apiyo, Pernilla Wittung-Stafshede

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 363 KB

english, 2006

7

How does activation loop phosphorylation modulate catalytic activity in the cAMP-dependent protein kinase: A theoretical study

Yuhui Cheng, Yingkai Zhang, J. Andrew McCammon

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 1.22 MB

english, 2006

8

A comparative study of available software for high-accuracy homology modeling: From sequence alignments to structural models

Akbar Nayeem, Doree Sitkoff, Stanley Krystek Jr.

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

9

Cofactor effects on the protein folding reaction: Acceleration of α-lactalbumin refolding by metal ions

Natalia A. Bushmarina, Clément E. Blanchet, Grégory Vernier, Vincent Forge

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 383 KB

english, 2006

10

Dynamic motions of free and bound Ø29 scaffolding protein identified by hydrogen deuterium exchange mass spectrometry

Chi-Yu Fu, Peter E. Prevelige Jr.

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 823 KB

english, 2006

11

Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae

Dong Hae Shin, Jeong-Sun Kim, Hisao Yokota, Rosalind Kim, Sung-Hou Kim

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 926 KB

english, 2006

12

Structures of S. aureus thymidylate kinase reveal an atypical active site configuration and an intermediate conformational state upon substrate binding

Masayo Kotaka, Balvinder Dhaliwal, Jingshan Ren, Charles E. Nichols, Richard Angell, Michael Lockyer, Alastair R. Hawkins, David K. Stammers

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 678 KB

english, 2006

13

Rapid peptide-based screening on the substrate specificity of severe acute respiratory syndrome (SARS) coronavirus 3C-like protease by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Ling-Hon Matthew Chu, Wai-Yan Choy, Sau-Na Tsai, Zihe Rao, Sai-Ming Ngai

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 456 KB

english, 2006

14

Functional contribution of a conserved, mobile loop histidine of phosphoribulokinase

Jennifer A. Runquist, Henry M. Miziorko

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 206 KB

english, 2006

15

Guanidinium derivatives bind preferentially and trigger long-distance conformational changes in an engineered T4 lysozyme

Mohammad S. Yousef, Nicole Bischoff, Collin M. Dyer, Walter A. Baase, Brian W. Matthews

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 407 KB

english, 2006

16

Thermodynamics of unfolding of an integral membrane protein in mixed micelles

Pankaj Sehgal, Daniel E. Otzen

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

17

Crystal structure of Homo sapiens PTD012 reveals a zinc-containing hydrolase fold

Babu A. Manjasetty, Konrad Büssow, Martin Fieber-Erdmann, Yvette Roske, Johan Gobom, Christoph Scheich, Frank Götz, Frank H. Niesen, Udo Heinemann

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 738 KB

english, 2006

18

The crystal structure of YycH involved in the regulation of the essential YycFG two-component system in Bacillus subtilis reveals a novel tertiary structure

Hendrik Szurmant, Haiyan Zhao, Michael A. Mohan, James A. Hoch, Kottayil I. Varughese

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 538 KB

english, 2006

19

Computer-aided NMR assay for detecting natively folded structural domains

Takayuki Hondoh, Atsushi Kato, Shigeyuki Yokoyama, Yutaka Kuroda

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 1.05 MB

english, 2006

20

New Escherichia coli outer membrane proteins identified through prediction and experimental verification

Paola Marani, Samuel Wagner, Louise Baars, Pierre Genevaux, Jan-Willem De Gier, Ingmarie Nilsson, Rita Casadio, Gunnar Von Heijne

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 266 KB

english, 2006

21

Bacterial display using circularly permuted outer membrane protein OmpX yields high affinity peptide ligands

Jeffrey J. Rice, Aaron Schohn, Paul H. Bessette, Kevin T. Boulware, Patrick S. Daugherty

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 488 KB

english, 2006

22

Identification of phosphorylation sites in glycine N-methyltransferase from rat liver

Zigmund Luka, Amy-Joan L. Ham, Jeremy L. Norris, Eui-Ju Yeo, Valery Yermalitsky, Byron Glenn, Richard M. Caprioli, Daniel C. Liebler, Conrad Wagner

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 553 KB

english, 2006

23

Assessing the role of aromatic residues in the amyloid aggregation of human muscle acylphosphatase

Francesco Bemporad, Niccolò Taddei, Massimo Stefani, Fabrizio Chiti

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 294 KB

english, 2006

24

Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity

Steven M. Dunn, Pierre J. Rizkallah, Emma Baston, Tara Mahon, Brian Cameron, Ruth Moysey, Feng Gao, Malkit Sami, Jonathan Boulter, Yi Li, Bent K. Jakobsen

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 612 KB

english, 2006

25

NMR study of the tetrameric KcsA potassium channel in detergent micelles

Jordan H. Chill, John M. Louis, Christopher Miller, Ad Bax

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 545 KB

english, 2006

26

Evolutionary links between FliH/YscL-like proteins from bacterial type III secretion systems and second-stalk components of the FoF1 and vacuolar ATPases

Mark J. Pallen, Christopher M. Bailey, Scott A. Beatson

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

27

Exploring protein interfaces with a general photochemical reagent

Gabriela E. Gómez, Ana Cauerhff, Patricio O. Craig, Fernando A. Goldbaum, José M. Delfino

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 383 KB

english, 2006

28

Crystal structure of 3-hydroxyanthranilic acid 3,4-dioxygenase from Saccharomyces cerevisiae: A special subgroup of the type III extradiol dioxygenases

Xiaowu Li, Min Guo, Jun Fan, Wenying Tang, Deqiang Wang, Honghua Ge, Hui Rong, Maikun Teng, Liwen Niu, Qun Liu, Quan Hao

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

29

Repeat protein architectures predicted by a continuum representation of fold space

Andrew C. Hausrath, Alain Goriely

Journal:

Protein Science

Year:

2006

Language:

english

File:

PDF, 434 KB

english, 2006

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