Volume 50; Issue 1

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Proteins: Structure, Function, and Bioinformatics
Volume 50; Issue 1

Proteins: Structure, Function, and Bioinformatics

Volume 50; Issue 1

1

Calcium binding to the transmembrane domain of the sarcoplasmic reticulum Ca2+-ATPase: Insights from molecular modeling

Valeria Costa, Paolo Carloni

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 985 KB

english, 2003

2

Protein-based virtual screening of chemical databases. II. Are homology models of g-protein coupled receptors suitable targets?

Caterina Bissantz, Philippe Bernard, Marcel Hibert, Didier Rognan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.52 MB

english, 2003

3

Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space

Sanzo Miyazawa, Robert L. Jernigan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

4

A knowledge-based scale for amino acid membrane propensity

Marco Punta, Amos Maritan

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 113 KB

english, 2003

5

Implicit solvent models for flexible protein–protein docking by molecular dynamics simulation

Ting Wang, Rebecca C. Wade

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 922 KB

english, 2003

6

Efficient RMSD measures for the comparison of two molecular ensembles

Rafael Brüschweiler

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 207 KB

english, 2003

7

Subcellular location prediction of apoptosis proteins

Guo-Ping Zhou, Kutbuddin Doctor

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 66 KB

english, 2003

8

Beyond the rotamer library: Genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains

Zhijie Liu, Lin Jiang, Ying Gao, Shide Liang, Hao Chen, Yuzhen Han, Luhua Lai

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 761 KB

english, 2003

9

Ion permeation through the gramicidin channel: Atomically detailed modeling by the stochastic difference equation

Koneshan Siva, Ron Elber

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 432 KB

english, 2003

10

Exponential decay kinetics in “downhill” protein folding

Stephen J. Hagen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 146 KB

english, 2003

11

Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: Comparing experimental with computed pKas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 421 KB

english, 2003

12

Analysis of the binding energies of testosterone, 5α-dihydrotestosterone, androstenedione and dehydroepiandrosterone sulfate with an antitestosterone antibody

Nana Nordman, Jarkko Valjakka, Mikael Peräkylä

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 142 KB

english, 2003

13

Structural plasticity of thermophilic serine hydroxymethyltransferases

Alessandro Paiardini, Giulio Gianese, Francesco Bossa, Stefano Pascarella

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 565 KB

english, 2003

14

Virtual screening to enrich hit lists from high-throughput screening: A case study on small-molecule inhibitors of angiogenin

Jeremy L. Jenkins, Richard Y. T. Kao, Robert Shapiro

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 288 KB

english, 2003

15

Testing similarity measures with continuous and discrete protein models

Stefan Wallin, Jochen Farwer, Ugo Bastolla

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 242 KB

english, 2003

16

X-ray structure of an M. jannaschii DNA-binding protein: Implications for antibiotic resistance in S. aureus

Soumya S. Ray, Jeffrey B. Bonanno, Hua Chen, Herminia de Lencastre, Shangwei Wu, Alexander Tomasz, Stephen K. Burley

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 170 KB

english, 2003

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