Volume 54; Issue 2

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Proteins: Structure, Function, and Bioinformatics
Volume 54; Issue 2

Proteins: Structure, Function, and Bioinformatics

Volume 54; Issue 2

1

Crystal structure of the Escherichia coli YjiA protein suggests a GTP-dependent regulatory function

Pavel P. Khil, Galina Obmolova, Alexey Teplyakov, Andrew J. Howard, Gary L. Gilliland, R. Daniel Camerini-Otero

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 137 KB

english, 2004

2

Solution structure of ADO1, a toxin extracted from the saliva of the assassin bug, Agriosphodrus dohrni

Cédric Bernard, Gerardo Corzo, Satomi Adachi-Akahane, Guillaume Foures, Kazunori Kanemaru, Yasuo Furukawa, Terumi Nakajima, Hervé Darbon

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 596 KB

english, 2004

3

Class-specific correlations between protein folding rate, structure-derived, and sequence-derived descriptors

Igor B. Kuznetsov, Shalom Rackovsky

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 212 KB

english, 2004

4

Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions

Kannan Gunasekaran, Arnold T. Hagler, Lila M. Gierasch

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 2.41 MB

english, 2004

5

A new pairwise folding potential based on improved decoy generation and side-chain packing

C. Loose, J. L. Klepeis, C. A. Floudas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 241 KB

english, 2004

6

ProVal: A protein-scoring function for the selection of native and near-native folds

Anders Berglund, Richard D. Head, Eric A. Welsh, Garland R. Marshall

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 414 KB

english, 2004

7

Type I collagen N-Telopeptides adopt an ordered structure when docked to their helix receptor during fibrillogenesis*

James P. Malone, Anne George, Arthur Veis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 635 KB

english, 2004

8

Evaluation of protein fold comparison servers

Marian Novotny, Dennis Madsen, Gerard J. Kleywegt

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 105 KB

english, 2004

9

Free energies of binding of polychlorinated biphenyls to the estrogen receptor from a single simulation

Chris Oostenbrink, Wilfred F. van Gunsteren

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 363 KB

english, 2004

10

Effective scoring function for protein sequence design

Shide Liang, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 336 KB

english, 2004

11

A Shannon entropy-based filter detects high- quality profile–profile alignments in searches for remote homologues

Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 174 KB

english, 2004

12

Using evolutionary information for the query and target improves fold recognition

Björn Wallner, Huisheng Fang, Tomas Ohlson, Johannes Frey-Skött, Arne Elofsson

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 215 KB

english, 2004

13

NH…O, OH…O, and CH…O hydrogen bonds in protein–ligand complexes: Strong and weak interactions in molecular recognition

Sanjay Sarkhel, Gautam R. Desiraju

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 572 KB

english, 2004

14

Crystal structure of the C67A mutant of isopentenyl diphosphate isomerase complexed with a mechanism-based irreversible inhibitor

J. Wouters, Y. Oudjama, V. Stalon, L. Droogmans, C.D. Poulter

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 193 KB

english, 2004

15

Phenomenological similarities between protein denaturation and small-molecule dissolution: Insights into the mechanism driving the thermal resistance of globular proteins

Raffaele Ragone

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 297 KB

english, 2004

16

Picosecond dynamics of the glutamate receptor in response to agonist-induced vibrational excitation

Minoru Kubo, Eiji Shiomitsu, Kei Odai, Tohru Sugimoto, Hideo Suzuki, Etsuro Ito

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 316 KB

english, 2004

17

Quantifying the effect of burial of amino acid residues on protein stability

Hongyi Zhou, Yaoqi Zhou

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 290 KB

english, 2004

18

Evolutionary trace analysis of scorpion toxins specific for K-channels

Shunyi Zhu, Isabelle Huys, Karin Dyason, Fons Verdonck, Jan Tytgat

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.21 MB

english, 2004

19

Strand-loop-strand motifs: Prediction of hairpins and diverging turns in proteins

Michael Kuhn, Jens Meiler, David Baker

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 220 KB

english, 2004

20

Novel protein and Mg2+ configurations in the Mg2+GDP complex of the SRP GTPase ffh

Pamela J. Focia, Hena Alam, Thanh Lu, Ursula D. Ramirez, Douglas M. Freymann

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 347 KB

english, 2004