Volume 55; Issue 1

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Proteins: Structure, Function, and Bioinformatics
Volume 55; Issue 1

Proteins: Structure, Function, and Bioinformatics

Volume 55; Issue 1

1

Free energy simulations and MM–PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody

Tuomo Laitinen, Jussi A. Kankare, Mikael Peräkylä

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 210 KB

english, 2004

2

Computer modeling of the rhamnogalacturonase–“hairy” pectin complex

Jong Keun Choi, Beom Hyoung Lee, Chong Hak Chae, Whanchul Shin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 473 KB

english, 2004

3

Protein conformer selection by sequence-dependent packing contacts in crystals of 3-phosphoglycerate kinase

Zoltán Kovári, Mária Vas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.30 MB

english, 2004

4

Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution

Yu Xia, Michael Levitt

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 722 KB

english, 2004

5

Prediction of α-turns in proteins using PSI-BLAST profiles and secondary structure information

Harpreet Kaur, G.P.S. Raghava

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

6

Roles of physical interactions in determining protein-folding mechanisms: Molecular simulation of protein G and α spectrin SH3

Seung Yup Lee, Yoshimi Fujitsuka, Do Hyun Kim, Shoji Takada

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 408 KB

english, 2004

7

Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations

Ilona Hudáky, Zoltán Gáspári, Oliviero Carugo, Maša Čemažar, Sándor Pongor, András Perczel

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 491 KB

english, 2004

8

Squeezed exponential kinetics to describe a nonglassy downhill folding as observed in a lattice protein model

Hironori K. Nakamura, Masaki Sasai, Mitsunori Takano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 241 KB

english, 2004

9

Immunoglobulin kappa light chain and its amyloidogenic mutants: A molecular dynamics study

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 562 KB

english, 2004

10

Identification of common structural features of binding sites in galactose-specific proteins

M.S. Sujatha, Petety V. Balaji

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 447 KB

english, 2004

11

Flexibility of β-sheets: Principal component analysis of database protein structures

Eldon G. Emberly, Ranjan Mukhopadhyay, Chao Tang, Ned S. Wingreen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 479 KB

english, 2004

12

A novel approach to predict active sites of enzyme molecules

Kuo-Chen Chou, Yu-dong Cai

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 107 KB

english, 2004

13

Trehalose–protein interaction in aqueous solution

Roberto D. Lins, Cristina S. Pereira, Philippe H. Hünenberger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 346 KB

english, 2004

14

Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii

Yosuke Tajika, Naoki Sakai, Yoshikazu Tanaka, Min Yao, Nobuhisa Watanabe, Isao Tanaka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 585 KB

english, 2004

15

The role of pH on instability and aggregation of sickle hemoglobin solutions

M. Manno, P. L. San Biagio, M. U. Palma

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 240 KB

english, 2004

16

Conformational subspace in simulation of early-stage protein folding

Wiktor Jurkowski, Michał Brylinski, Leszek Konieczny, Zdzisław Wiíniowski, Irena Roterman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 830 KB

english, 2004

17

Why does the Ras switch “break” by oncogenic mutations?

Avital Shurki, Arieh Warshel

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 595 KB

english, 2004

18

Selection and affinity maturation of IgNAR variable domains targeting Plasmodium falciparum AMA1

Stewart D. Nuttall, Karen S. Humberstone, Usha V. Krishnan, Jennifer A. Carmichael, Larissa Doughty, Meghan Hattarki, Andrew M. Coley, Joanne L. Casey, Robin F. Anders, Michael Foley, Robert A. Irving

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 916 KB

english, 2004

19

X-ray structure of human gankyrin, the product of a gene linked to hepatocellular carcinoma

Babu A. Manjasetty, Claudia Quedenau, Volker Sievert, Konrad Büssow, Frank Niesen, Heinrich Delbrück, Udo Heinemann

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 333 KB

english, 2004

20

Inter-residue and solvent-residue interactions in proteins: A statistical study on experimental structures

Riccardo Chelli, Francesco Luigi Gervasio, Piero Procacci, Vincenzo Schettino

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1000 KB

english, 2004

21

Enzyme family classification by support vector machines

C.Z. Cai, L.Y. Han, Z.L. Ji, Y.Z. Chen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 106 KB

english, 2004