Volume 68; Issue 3

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Proteins: Structure, Function, and Bioinformatics
Volume 68; Issue 3

Proteins: Structure, Function, and Bioinformatics

Volume 68; Issue 3

1

Parallel tempering molecular dynamics folding simulation of a signal peptide in explicit water

Siegfried Höfinger, Benjamin Almeida, Ulrich H. E. Hansmann

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 854 KB

english, 2007

2

From coarse-grain to all-atom: Toward multiscale analysis of protein landscapes

Allison P. Heath, Lydia E. Kavraki, Cecilia Clementi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 987 KB

english, 2007

3

Structure-based virtual ligand screening with LigandFit: Pose prediction and enrichment of compound collections

Matthieu Montes, Maria A. Miteva, Bruno O. Villoutreix

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 499 KB

english, 2007

4

FLIPDock: Docking flexible ligands into flexible receptors

Yong Zhao, Michel F. Sanner

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.33 MB

english, 2007

5

The crystal structure of the secreted aspartic proteinase 3 from Candida albicans and its complex with pepstatin A

Claudia Borelli, Elisabeth Ruge, Martin Schaller, Michel Monod, Hans Christian Korting, Robert Huber, Klaus Maskos

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

6

Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase

Michael E. Budiman, Michael H. Knaggs, Jacquelyn S. Fetrow, Rebecca W. Alexander

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1023 KB

english, 2007

7

Generation of blood group specificity: New insights from structural studies on the complexes of A- and B-reactive saccharides with basic winged bean agglutinin

Kiran A. Kulkarni, Samiksha Katiyar, Avadhesha Surolia, Mamannamana Vijayan, Kaza Suguna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 384 KB

english, 2007

8

Modeling and analysis of molecularinteraction between Smurf1-WW2 domain and various isoforms of LIM mineralization protein

Sreedhara Sangadala, Scott D. Boden, Raghu Prasad Rao Metpally, Boojala Vijay B. Reddy

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 336 KB

english, 2007

9

Constructing ensembles of flexible fragments in native proteins by iterative stochastic elimination is relevant to protein–protein interfaces

Efrat Noy, Tal Tabakman, Amiram Goldblum

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

10

Structural and biochemical characterization of inhibitor-1α

Hsien-Bin Huang, Yi-Chen Chen, Ting-Ting Lee, Yi-Choang Huang, Hsin-Tzu Liu, Chen-Kuang Liu, Huey-Jen Tsay, Ta-Hsien Lin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 401 KB

english, 2007

11

Atomic contacts in protein structures. A detailed analysis of atomic radii, packing, and overlaps

Daniel Seeliger, Bert L. de Groot

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 298 KB

english, 2007

12

Studies of the molten globule state of ferredoxin: Structural characterization and implications on protein folding and iron–sulfur center assembly

Sónia S. Leal, Cláudio M. Gomes

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 263 KB

english, 2007

13

β-strand recombination in tricalbin evolution and the origin of synaptotagmin-like C2 domains

José L. Jiménez, Bazbek Davletov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 3.68 MB

english, 2007

14

Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family

James M. Aramini, Yuanpeng J. Huang, G.V.T. Swapna, John R. Cort, P.K. Rajan, Rong Xiao, Ritu Shastry, Thomas B. Acton, Jinfeng Liu, Burkhard Rost, Michael A. Kennedy, Gaetano T. Montelione

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

15

Conformational contagion in a protein: Structural properties of a chameleon sequence

Kazufumi Takano, Yoshiaki Katagiri, Atsushi Mukaiyama, Hyongi Chon, Hiroyoshi Matsumura, Yuichi Koga, Shigenori Kanaya

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 683 KB

english, 2007

16

Pactolus I-domain: Functional switching of the Rossmann fold

Mehmet Sen, Glen B. Legge

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 506 KB

english, 2007

17

Fold recognition by concurrent use of solvent accessibility and residue depth

Song Liu, Chi Zhang, Shide Liang, Yaoqi Zhou

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 292 KB

english, 2007

18

A model-based proposal for the role of UreF as a GTPase-activating protein in the urease active site biosynthesis

Marco Salomone-Stagni, Barbara Zambelli, Francesco Musiani, Stefano Ciurli

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.23 MB

english, 2007

19

Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides

Sonia Fieulaine, John E. Lunn, Jean-Luc Ferrer

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 245 KB

english, 2007

20

Intrinsic disorder in yeast transcriptional regulatory network

Gajinder Pal Singh, Debasis Dash

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 142 KB

english, 2007