Volume 79; Issue 10

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Proteins: Structure, Function, and Bioinformatics
Volume 79; Issue 10

Proteins: Structure, Function, and Bioinformatics

Volume 79; Issue 10

1

Predicting large-scale conformational changes in proteins using energy-weighted normal modes

David S. Palmer, Frank Jensen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.12 MB

english, 2011

2

The VSGB 2.0 model: A next generation energy model for high resolution protein structure modeling

Jianing Li, Robert Abel, Kai Zhu, Yixiang Cao, Suwen Zhao, Richard A. Friesner

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

3

Ionic strength dependence of F-actin and glycolytic enzyme associations: A Brownian dynamics simulations approach

Neville Y. Forlemu, Eric N. Njabon, Kristine L. Carlson, Elizabeth S. Schmidt, Victor F. Waingeh, Kathryn A. Thomasson

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 3.06 MB

english, 2011

4

PackHelix: A tool for helix-sheet packing during protein structure prediction

Chengcheng Hu, Patrice Koehl, Nelson Max

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.37 MB

english, 2011

5

Computed structures of point deletion mutants and their enzymatic activities

Monica Berrondo, Jeffrey J. Gray

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.46 MB

english, 2011

6

A survey of hemoglobin quaternary structures

Sucharita Dey, Pinak Chakrabarti, Joël Janin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 305 KB

english, 2011

7

Structural analysis of CPF_2247, a novel α-amylase from Clostridium perfringens

Elizabeth Ficko-Blean, Christopher P. Stuart, Alisdair B. Boraston

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.56 MB

english, 2011

8

Crystal structure of Mycobacterium tuberculosis Rv3168: A putative aminoglycoside antibiotics resistance enzyme

Sangwoo Kim, Chi My Thi Nguyen, Eun-Jung Kim, Kyung-Jin Kim

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.33 MB

english, 2011

9

Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function

James M. Aramini, Paolo Rossi, Markus Fischer, Rong Xiao, Thomas B. Acton, Gaetano T. Montelione

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 997 KB

english, 2011

10

Three ways in, one way out: Water dynamics in the trans-membrane domains of the inner membrane translocase AcrB

Nadine Fischer, Christian Kandt

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 4.81 MB

english, 2011

11

The active–inactive transition of human thymidylate synthase: Targeted molecular dynamics simulations

Outi M. H. Salo-Ahen, Rebecca C. Wade

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.94 MB

english, 2011

12

Ab initio phasing of a nucleoside hydrolase-related hypothetical protein from Saccharophagus degradans that is associated with carbohydrate metabolism

Jan-Hendrik Hehemann, Candace Marsters, Alisdair B. Boraston

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

13

Prechemistry versus preorganization in DNA replication fidelity

B. Ram Prasad, Arieh Warshel

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.56 MB

english, 2011

14

Progress in super long loop prediction

Suwen Zhao, Kai Zhu, Jianing Li, Richard A. Friesner

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 486 KB

english, 2011

15

Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold

Yasuyuki Matoba, Akira Nakayama, Kosuke Oda, Masafumi Noda, Takanori Kumagai, Motohiro Nishimura, Masanori Sugiyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 367 KB

english, 2011

16

Elastic network model-based normal mode analysis reveals the conformational couplings in the tripartite AcrAB-TolC multidrug efflux complex

Beibei Wang, Jingwei Weng, Kangnian Fan, Wenning Wang

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 4.14 MB

english, 2011

17

Mycobacterium tuberculosis Rv0899 defines a family of membrane proteins widespread in nitrogen-fixing bacteria

Francesca M. Marassi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 964 KB

english, 2011

18

Inhibition of α-synuclein aggregation by small heat shock proteins

Ilona B. Bruinsma, Kim A. Bruggink, Karsten Kinast, Alexandra A. M. Versleijen, Ine M. J. Segers-Nolten, Vinod Subramaniam, H. Bea Kuiperij, Wilbert Boelens, Robert M. W. de Waal, Marcel M. Verbeek

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 846 KB

english, 2011

19

Molecular dynamics modeling of tubulin C-terminal tail interactions with the microtubule surface

Holly Freedman, Tyler Luchko, Richard F. Luduena, Jack A. Tuszynski

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 822 KB

english, 2011