Volume 15; Issue 2-3

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PROTEOMICS
Volume 15; Issue 2-3

PROTEOMICS

Volume 15; Issue 2-3

1

Mass spectrometry based quantitative proteomics and integrative network analysis accentuates modulating roles of annexin-1 in mammary tumorigenesis

Swa, Hannah L. F., Shaik, Asfa Alli, Lim, Lina H. K., Gunaratne, Jayantha

Journal:

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

2

From pathways to networks: Connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry

Li, Xu, Wang, Wenqi, Chen, Junjie

Journal:

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

3

Proteomics and circadian rhythms: It's all about signaling!

Mauvoisin, Daniel, Dayon, Loïc, Gachon, Frédéric, Kussmann, Martin

Journal:

Year:

2015

Language:

english

File:

PDF, 668 KB

english, 2015

4

Proteomics approaches to identify mono-(ADP-ribosyl)ated and poly(ADP-ribosyl)ated proteins

Vivelo, Christina A., Leung, Anthony K. L.

Journal:

Year:

2015

Language:

english

File:

PDF, 926 KB

english, 2015

5

Quantitative phosphoproteomic analysis of IL-33-mediated signaling

Pinto, Sneha M., Nirujogi, Raja Sekhar, Rojas, Pamela Leal, Patil, Arun H., Manda, Srikanth S., Subbannayya, Yashwanth, Roa, Juan Carlos, Chatterjee, Aditi, Prasad, T. S. Keshava, Pandey, Akhilesh

Journal:

Year:

2015

Language:

english

File:

PDF, 646 KB

english, 2015

6

Extracellular vesicles including exosomes are mediators of signal transduction: Are they protective or pathogenic?

Gangoda, Lahiru, Boukouris, Stephanie, Liem, Michael, Kalra, Hina, Mathivanan, Suresh

Journal:

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

7

Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma

Syed, Nazia, Chavan, Sandip, Sahasrabuddhe, Nandini A., Renuse, Santosh, Sathe, Gajanan, Nanjappa, Vishalakshi, Radhakrishnan, Aneesha, Raja, Remya, Pinto, Sneha M., Srinivasan, Anand, Prasad, T. S. K

Journal:

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

8

Array-based proteomic approaches to study signal transduction pathways: Prospects, merits and challenges

Gahoi, Nikita, Ray, Sandipan, Srivastava, Sanjeeva

Journal:

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

9

The major cystic fibrosis causing mutation exhibits defective propensity for phosphorylation

Pasyk, Stan, Molinski, Steven, Ahmadi, Saumel, Ramjeesingh, Mohabir, Huan, Ling-Jun, Chin, Stephanie, Du, Kai, Yeger, Herman, Taylor, Paul, Moran, Michael F., Bear, Christine E.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

10

The human embryonic stem cell proteome revealed by multidimensional fractionation followed by tandem mass spectrometry

Zhao, Peng, Schulz, Thomas C., Sherrer, Eric S., Weatherly, D. Brent, Robins, Allan J., Wells, Lance

Journal:

Year:

2015

Language:

english

File:

PDF, 780 KB

english, 2015

11

The cellular and proteomic response of primary and immortalized murine Kupffer cells following immune stimulation diverges from that of monocyte-derived macrophages

Tweedell, Rebecca, Tao, Dingyin, Dinglasan, Rhoel R.

Journal:

Year:

2015

Language:

english

File:

PDF, 924 KB

english, 2015

12

Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome

Tan, Haiyan, Wu, Zhiping, Wang, Hong, Bai, Bing, Li, Yuxin, Wang, Xusheng, Zhai, Bo, Beach, Thomas G., Peng, Junmin

Journal:

Year:

2015

Language:

english

File:

PDF, 986 KB

english, 2015

13

Effects of MEK inhibitors GSK1120212 and PD0325901 in vivo using 10-plex quantitative proteomics and phosphoproteomics

Paulo, Joao A., McAllister, Fiona E., Everley, Robert A., Beausoleil, Sean A., Banks, Alexander S., Gygi, Steven P.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.03 MB

english, 2015

14

Contribution of phosphoproteomics in understanding SRC signaling in normal and tumor cells

Sirvent, Audrey, Urbach, Serge, Roche, Serge

Journal:

Year:

2015

Language:

english

File:

PDF, 942 KB

english, 2015

15

Functional characterization of epithelial ovarian cancer histotypes by drug target based protein signaling activation mapping: Implications for personalized cancer therapy

Sereni, Maria Isabella, Baldelli, Elisa, Gambara, Guido, Deng, Jianghong, Zanotti, Laura, Bandiera, Elisabetta, Bignotti, Eliana, Ragnoli, Monica, Tognon, Germana, Ravaggi, Antonella, Meani, Francesco

Journal:

Year:

2015

Language:

english

File:

PDF, 756 KB

english, 2015

16

Thiol-based redox proteomics in cancer research

Yuan, Kefei, Liu, Yuan, Chen, Hai-Ning, Zhang, Lu, Lan, Jiang, Gao, Wei, Dou, Qianhui, Nice, Edouard C., Huang, Canhua

Journal:

Year:

2015

Language:

english

File:

PDF, 416 KB

english, 2015

17

Differential regulation of FGFR3 by PTPN1 and PTPN2

St-Germain, Jonathan R., Taylor, Paul, Zhang, Wen, Li, Zhihua, Ketela, Troy, Moffat, Jason, Neel, Benjamin G., Trudel, Suzanne, Moran, Michael F.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.57 MB

english, 2015

18

MS/MS-based strategies for proteomic profiling of invasive cell structures

Havrylov, Serhiy, Park, Morag

Journal:

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

19

Investigation of phosphoproteome in RAGE signaling

Batkulwar, Kedar B., Bansode, Sneha B., Patil, Gouri V., Godbole, Rashmi K., Kazi, Rubina S., Chinnathambi, Subashchandrabose, Shanmugam, Dhanasekaran, Kulkarni, Mahesh J.

Journal:

Year:

2015

Language:

english

File:

PDF, 649 KB

english, 2015

20

Phosphotyrosine profiling identifies ephrin receptor A2 as a potential therapeutic target in esophageal squamous-cell carcinoma

Syed, Nazia, Barbhuiya, Mustafa A., Pinto, Sneha M., Nirujogi, Raja Sekhar, Renuse, Santosh, Datta, Keshava K., Khan, Aafaque Ahmad, Srikumar, Kotteazeth, Prasad, T. S. Keshava, Kumar, M. Vijaya, Kuma

Journal:

Year:

2015

Language:

english

File:

PDF, 1.22 MB

english, 2015

21

Simultaneous dissection and comparison of IL-2 and IL-15 signaling pathways by global quantitative phosphoproteomics

Osinalde, Nerea, Sanchez-Quiles, Virginia, Akimov, Vyacheslav, Guerra, Barbara, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Year:

2015

Language:

english

File:

PDF, 930 KB

english, 2015

22

Multipronged quantitative proteomic analyses indicate modulation of various signal transduction pathways in human meningiomas

Sharma, Samridhi, Ray, Sandipan, Mukherjee, Shuvolina, Moiyadi, Aliasgar, Sridhar, Epari, Srivastava, Sanjeeva

Journal:

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

23

A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations

Blair, Brian G., Wu, Xinyan, Zahari, Muhammad Saddiq, Mohseni, Morassa, Cidado, Justin, Wong, Hong Yuen, Beaver, Julia A., Cochran, Rory L., Zabransky, Daniel J., Croessmann, Sarah, Chu, David, Toro,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

24

Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics

Zhang, Xu, Belkina, Natalya, Jacob, Harrys Kishore Charles, Maity, Tapan, Biswas, Romi, Venugopalan, Abhilash, Shaw, Patrick G., Kim, Min-Sik, Chaerkady, Raghothama, Pandey, Akhilesh, Guha, Udayan

Journal:

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

25

Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O -GlcNAc in the DNA damage response pathway

Zhong, Jun, Martinez, Marissa, Sengupta, Srona, Lee, Albert, Wu, Xinyan, Chaerkady, Raghothama, Chatterjee, Aditi, O'Meally, Robert N., Cole, Robert N., Pandey, Akhilesh, Zachara, Natasha E.

Journal:

Year:

2015

Language:

english

File:

PDF, 981 KB

english, 2015

26

Comparative network analysis via differential graphlet communities

Wong, Serene W. H., Cercone, Nick, Jurisica, Igor

Journal:

Year:

2015

Language:

english

File:

PDF, 799 KB

english, 2015

27

Cover Picture: Proteomics 2-3'15

Journal:

Year:

2015

File:

PDF, 223 KB

2015

28

Signal Transduction

Pandey, Akhilesh, Moran, Michael F.

Journal:

Year:

2015

Language:

english

File:

PDF, 137 KB

english, 2015

29

Glycoproteins identified from heart failure and treatment models

Yang, Shuang, Chen, Lijun, Sun, Shisheng, Shah, Punit, Yang, Weiming, Zhang, Bai, Zhang, Zhen, Chan, Daniel W., Kass, David A., van Eyk, Jennifer E., Zhang, Hui

Journal:

Year:

2015

Language:

english

File:

PDF, 613 KB

english, 2015

30

A comprehensive proteomic and phosphoproteomic analysis of yeast deletion mutants of 14-3-3 orthologs and associated effects of rapamycin

Paulo, Joao A., Gygi, Steven P.

Journal:

Year:

2015

Language:

english

File:

PDF, 637 KB

english, 2015

31

Phosphoproteomic analysis of basal and therapy-induced adaptive signaling networks in BRAF and NRAS mutant melanoma

Fedorenko, Inna V., Fang, Bin, Munko, Ana Cecelia, Gibney, Geoffrey T., Koomen, John M., Smalley, Keiran S. M.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.83 MB

english, 2015

32

Comprehensive identification of phosphorylation sites on the Numb endocytic adaptor protein

Krieger, Jonathan R., Taylor, Paul, Moran, Michael F., McGlade, C. Jane

Journal:

Year:

2015

Language:

english

File:

PDF, 1.43 MB

english, 2015

33

Emerging roles of post-translational modifications in signal transduction and angiogenesis

Rahimi, Nader, Costello, Catherine E.

Journal:

Year:

2015

Language:

english

File:

PDF, 977 KB

english, 2015

34

PROTEOMICS - Clinical Applications Table of Contents

Journal:

Year:

2015

Language:

english

File:

PDF, 91 KB

english, 2015

35

Proteomics equipped with multiplexing toward ultra high throughput

Journal:

Year:

2015

Language:

english

File:

PDF, 62 KB

english, 2015

36

Editorial Board: Proteomics 2-3'15

Journal:

Year:

2015

Language:

english

File:

PDF, 193 KB

english, 2015

37

Contents: Proteomics 2-3'15

Journal:

Year:

2015

Language:

english

File:

PDF, 990 KB

english, 2015

38

Protein tyrosine nitration: A signaling mechanism conserved from yeast to man

Bottari, Serge P.

Journal:

Year:

2015

Language:

english

File:

PDF, 70 KB

english, 2015

39

9 Standard abbreviations

Journal:

Year:

2015

Language:

english

File:

PDF, 36 KB

english, 2015

40

Integrated approach using multistep enzyme digestion, TiO 2 enrichment, and database search for in-depth phosphoproteomic profiling

Han, Dohyun, Jin, Jonghwa, Yu, Jiyoung, Kim, Kyunggon, Kim, Youngsoo

Journal:

Year:

2015

Language:

english

File:

PDF, 509 KB

english, 2015

41

Analysis of nitrated proteins in Saccharomyces cerevisiae involved in mating signal transduction

Kang, Jeong Won, Lee, Na Young, Cho, Kyung-Cho, Lee, Min Young, Choi, Do-Young, Park, Sang-Hyun, Kim, Kwang Pyo

Journal:

Year:

2015

Language:

english

File:

PDF, 657 KB

english, 2015

42

Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats

Nirujogi, Raja Sekhar, Wright, James D., Manda, Srikanth S., Zhong, Jun, Na, Chan Hyun, Meyerhoff, James, Benton, Bernard, Jabbour, Rabih, Willis, Kristen, Kim, Min-Sik, Pandey, Akhilesh, Sekowski, Je

Journal:

Year:

2015

Language:

english

File:

PDF, 875 KB

english, 2015

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