Volume 4; Issue 1

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Statistical Applications in Genetics and Molecular Biology
Volume 4; Issue 1

Statistical Applications in Genetics and Molecular Biology

Volume 4; Issue 1

1

A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics

Schäfer, Juliane, Strimmer, Korbinian

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.42 MB

english, 2005

2

A General Framework for Weighted Gene Co-Expression Network Analysis

Zhang, Bin, Horvath, Steve

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.25 MB

english, 2005

3

Correlation Between Gene Expression Levels and Limitations of the Empirical Bayes Methodology for Finding Differentially Expressed Genes

Qiu, Xing, Klebanov, Lev, Yakovlev, Andrei

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 873 KB

english, 2005

4

Reproducible Research: A Bioinformatics Case Study

Gentleman, Robert

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 558 KB

english, 2005

5

Error Distribution for Gene Expression Data

Purdom, Elizabeth, Holmes, Susan P

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 5.62 MB

english, 2005

6

Incorporating Biological Information as a Prior in an Empirical Bayes Approach to Analyzing Microarray Data

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

7

Test on the Structure of Biological Sequences via Chaos Game Representation

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 420 KB

english, 2005

8

Prediction of Missing Values in Microarray and Use of Mixed Models to Evaluate the Predictors

Feten, Guri, Almøy, Trygve, Aastveit, Are H.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 400 KB

english, 2005

9

Comparing Bacterial DNA Microarray Fingerprints

Willse, Alan, Chandler, Darrell P, White, Amanda, Protic, Miroslava, Daly, Don S, Wunschel, Sharon

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.51 MB

english, 2005

10

Comparing Automatic and Manual Image Processing in FLARE Assay Analysis for Colon Carcinogenesis

Leyk, Malgorzata, Nguyen, Danh V, Attoor, Sanju N, Dougherty, Edward R, Turner, Nancy D, Bancroft, Laura K, Chapkin, Robert S, Lupton, Joanne R, Carroll, Raymond J

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 501 KB

english, 2005

11

On Reference Designs For Microarray Experiments

Steibel, Juan P., Rosa, Guilherme J. M.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 401 KB

english, 2005

12

Statistical Inference in Evolutionary Models of DNA Sequences via the EM Algorithm

Hobolth, Asger, Jensen, Jens Ledet

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 281 KB

english, 2005

13

Continuous Covariates in Genetic Association Studies of Case-Parent Triads: Gene and Gene-Environment Interaction Effects, Population Stratification, and Power Analysis

Lim, Sooyeol, Beyene, Joseph, Greenwood, Celia M. T.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 421 KB

english, 2005

14

Structured Antedependence Models for Functional Mapping of Multiple Longitudinal Traits

Zhao, Wei, Hou, Wei, Littell, Ramon C., Wu, Rongling

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 386 KB

english, 2005

15

Pixel-level Signal Modelling with Spatial Correlation for Two-Colour Microarrays

Ekstrøm, Claus T, Bak, Søren, Rudemo, Mats

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 290 KB

english, 2005

16

Generalized Rank Tests for Replicated Microarray Data

Lee, Mei-Ling Ting, Gray, Robert J, Björkbacka, Harry, Freeman, Mason W

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 729 KB

english, 2005

17

A Simple Loglinear Model for Haplotype Effects in a Case-Control Study Involving Two Unphased Genotypes

Baker, Stuart G.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 378 KB

english, 2005

18

Hierarchical Inverse Gaussian Models and Multiple Testing: Application to Gene Expression Data

Labbe, Aurelie, Thompson, Mary

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 327 KB

english, 2005

19

Early Diagnostic Marker Panel Determination for Microarray Based Clinical Studies

Jaeger, Jochen, Weichenhan, Dieter, Ivandic, Boris, Spang, Rainer

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 424 KB

english, 2005

20

Extension of the SIMLA Package for Generating Pedigrees with Complex Inheritance Patterns: Environmental Covariates, Gene-Gene and Gene-Environment Interaction

Schmidt, Mike, Hauser, Elizabeth R, Martin, Eden R., Schmidt, Silke

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 540 KB

english, 2005

21

Reverse Engineering Galactose Regulation in Yeast through Model Selection

Thorsson, Vesteinn, Hörnquist, Michael, Siegel, Andrew F, Hood, Leroy

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 353 KB

english, 2005

22

Empirical Bayes and Resampling Based Multiple Testing Procedure Controlling Tail Probability of the Proportion of False Positives.

van der Laan, Mark J., Birkner, Merrill D., Hubbard, Alan E.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 406 KB

english, 2005

23

Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model

Gusnanto, Arief, Ploner, Alexander, Pawitan, Yudi

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 3.55 MB

english, 2005

24

Prediction of Genomewide Conserved Epitope Profiles of HIV-1: Classifier Choice and Peptide Representation

Xiao, Yuanyuan, Segal, Mark R

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 717 KB

english, 2005

25

Empirical Bayes Microarray ANOVA and Grouping Cell Lines by Equal Expression Levels

Lönnstedt, Ingrid, Rimini, Rebecca, Nilsson, Peter

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 701 KB

english, 2005

26

Stepwise Normalization of Two-Channel Spotted Microarrays

Xiao, Yuanyuan, Segal, Mark R, Yang, Yee Hwa

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 3.87 MB

english, 2005

27

Bayesian Statistical Studies of the Ramachandran Distribution

Pertsemlidis, Alexander, Zelinka, Jan, Fondon, John W., Henderson, R. Keith, Otwinowski, Zbyszek

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.14 MB

english, 2005

28

Robust Remote Homology Detection by Feature Based Profile Hidden Markov Models

Plötz, Thomas, Fink, Gernot A.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 677 KB

english, 2005

29

Estimating Motifs Under Order Restrictions

van Zwet, Erik W, Kechris, Katherina J, Bickel, Peter J, Eisen, Michael B.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 313 KB

english, 2005

30

The Relative Inefficiency of Sequence Weights Approaches in Determining a Nucleotide Position Weight Matrix

Newberg, Lee A, McCue, Lee Ann, Lawrence, Charles E

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 272 KB

english, 2005

31

Empirical Bayes Estimation of a Sparse Vector of Gene Expression Changes

Erickson, Stephen, Sabatti, Chiara

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 1.42 MB

english, 2005

32

FADO: A Statistical Method to Detect Favored or Avoided Distances between Occurrences of Motifs using the Hawkes' Model

Gusto, Gaelle, Schbath, Sophie

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 7.18 MB

english, 2005

33

Multiple Testing and Data Adaptive Regression: An Application to HIV-1 Sequence Data.

Birkner, Merrill D., Sinisi, Sandra E., van der Laan, Mark J.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 420 KB

english, 2005

34

Combined Association and Linkage Analysis for General Pedigrees and Genetic Models

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 483 KB

english, 2005

35

A Probabilistic Approach to Large-Scale Association Scans: A Semi-Bayesian Method to Detect Disease-Predisposing Alleles

Schrodi, Steven J

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 981 KB

english, 2005

36

Weighted Analysis of Paired Microarray Experiments

Kristiansson, Erik, Sjögren, Anders, Rudemo, Mats, Nerman, Olle

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 2.12 MB

english, 2005

37

Computing Asymptotic Power and Sample Size for Case-Control Genetic Association Studies in the Presence of Phenotype and/or Genotype Misclassification Errors

Ji, Fei, Yang, Yaning, Haynes, Chad, Finch, Stephen J, Gordon, Derek

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 654 KB

english, 2006