Volume 4

Genomics Data

Volume 4

1

Bacterial tag encoded FLX titanium amplicon pyrosequencing (bTEFAP) based assessment of prokaryotic diversity in metagenome of Lonar soda lake, India

Dudhagara, Pravin, Ghelani, Anjana, Patel, Rajesh, Chaudhari, Rajesh, Bhatt, Shreyas

Journal:

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

2

Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1

Wawrzyniak, Ivan, Courtine, Damien, Osman, Marwan, Hubans-Pierlot, Christine, Cian, Amandine, Nourrisson, Céline, Chabe, Magali, Poirier, Philippe, Bart, Aldert, Polonais, Valérie, Delgado-Viscogliosi

Journal:

Year:

2015

Language:

english

File:

PDF, 216 KB

english, 2015

3

Dynamics of GATA1 binding and expression response in a GATA1-induced erythroid differentiation system

Jain, Deepti, Mishra, Tejaswini, Giardine, Belinda M., Keller, Cheryl A., Morrissey, Christapher S., Magargee, Susan, Dorman, Christine M., Long, Maria, Weiss, Mitchell J., Hardison, Ross C.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

4

Data for chromosome contacts and matched transcription profiles at three cell cycle phases in the fission yeast

Grand, Ralph S., O'Sullivan, Justin M.

Journal:

Year:

2015

Language:

english

File:

PDF, 479 KB

english, 2015

5

Draft genome sequence of the Algerian bee Apis mellifera intermissa

Haddad, Nizar Jamal, Loucif-Ayad, Wahida, Adjlane, Noureddine, Saini, Deepti, Manchiganti, Rushiraj, Krishnamurthy, Venkatesh, AlShagoor, Banan, Batainh, Ahmed Mahmud, Mugasimangalam, Raja

Journal:

Year:

2015

Language:

english

File:

PDF, 211 KB

english, 2015

6

Analysis of changes to mRNA levels and CTCF occupancy upon TFII-I knockdown

Marques, Maud, Hernández, Rodrigo Peña, Witcher, Michael

Journal:

Year:

2015

Language:

english

File:

PDF, 994 KB

english, 2015

7

DNA microarray global gene expression analysis of influenza virus-infected chicken and duck cells

Kuchipudi, Suresh V., Dunham, Stephen P., Chang, Kin-Chow

Journal:

Year:

2015

Language:

english

File:

PDF, 896 KB

english, 2015

8

Cataloguing the bacterial diversity of the Sundarbans mangrove, India in the light of metagenomics

Basak, Pijush, Pramanik, Arnab, Roy, Ranita, Chattopadhyay, Dhrubajyoti, Bhattacharyya, Maitree

Journal:

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

9

A microarray analysis of two distinct lymphatic endothelial cell populations

Schweighofer, Bernhard, Rohringer, Sabrina, Pröll, Johannes, Holnthoner, Wolfgang

Journal:

Year:

2015

Language:

english

File:

PDF, 407 KB

english, 2015

10

Pyrosequencing based profiling of the bacterial community in the Chilika Lake, the largest lagoon of India

Pramanik, Arnab, Basak, Pijush, Banerjee, Satabdi, Sengupta, Sanghamitra, Chattopadhyay, Dhrubajyoti, Bhattacharyya, Maitree

Journal:

Year:

2015

Language:

english

File:

PDF, 706 KB

english, 2015

11

Expression profiling of wild type and β-catenin gene disrupted human BxPC-3 pancreatic adenocarcinoma cells

Olsen, Petter Angell, Lund, Kaja, Krauss, Stefan

Journal:

Year:

2015

Language:

english

File:

PDF, 181 KB

english, 2015

12

Technical data of the transcriptomic analysis performed on tsetse fly symbionts, Sodalis glossinidius and Wigglesworthia glossinidia, harbored, respectively by non-infected, Trypanosoma brucei gambiense infected and self-cured Glossina palpalis gambiensis tsetse flies

Geiger, Anne, Tchicaya, Bernadette, Rihet, Pascal

Journal:

Year:

2015

Language:

english

File:

PDF, 656 KB

english, 2015

13

Comparative genomic analysis and phenazine production of Pseudomonas chlororaphis, a plant growth-promoting rhizobacterium

Chen, Yawen, Shen, Xuemei, Peng, Huasong, Hu, Hongbo, Wang, Wei, Zhang, Xuehong

Journal:

Year:

2015

Language:

english

File:

PDF, 2.13 MB

english, 2015

14

Transcription profiling of the Neurospora crassa response to a group of synthetic (thio)xanthones and a natural acetophenone

Pedro Gonçalves, A., Silva, Nuno, Oliveira, Carla, Kowbel, David J., Glass, N. Louise, Kijjoa, Anake, Palmeira, Andreia, Sousa, Emília, Pinto, Madalena, Videira, Arnaldo

Journal:

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

15

Effect of glucocorticoids on lncRNA and mRNA expression profiles of the bone microcirculatory endothelial cells from femur head of Homo sapiens

Yu, Qingsheng, Guo, Wanshou, Shen, Jianying, Lv, Yuming

Journal:

Year:

2015

File:

PDF, 721 KB

2015

16

Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae

Zhou, Tianhong, Chen, Kai, Zhang, Hai-Xin, Deng, Xin

Journal:

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

17

Transcriptional profiling of Foxo3a and Fancd2 regulated genes in mouse hematopoietic stem cells

Li, Xiaoli, Zhang, Tingting, Wilson, Andrew, Amarachintha, Surya, Sertorio, Mathieu, Pang, Qishen

Journal:

Year:

2015

Language:

english

File:

PDF, 229 KB

english, 2015

18

Global gene expression profiling analysis reveals reduction of stemness after B-RAF inhibition in colorectal cancer cell lines

Boerries, Melanie, Herr, Ricarda, Brummer, Tilman, Busch, Hauke

Journal:

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

19

First report of bacterial community from a Bat Guano using Illumina next-generation sequencing

De Mandal, Surajit, Zothansanga,, Panda, Amritha Kumari, Bisht, Satpal Singh, Senthil Kumar, Nachimuthu

Journal:

Year:

2015

Language:

english

File:

PDF, 266 KB

english, 2015

20

Global gene analysis identifying genes commonly regulated by the Ras/Raf/MEK and type I IFN pathways

Komatsu, Y., Hirasawa, K., Christian, S.L.

Journal:

Year:

2015

Language:

english

File:

PDF, 627 KB

english, 2015

21

Toxicogenomic analysis of placenta samples from mice exposed to different doses of BPA

Tait, Sabrina, Tassinari, Roberta, Maranghi, Francesca, Mantovani, Alberto

Journal:

Year:

2015

Language:

english

File:

PDF, 280 KB

english, 2015

22

Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana

Slane, Daniel, Kong, Jixiang, Schmid, Markus, Jürgens, Gerd, Bayer, Martin

Journal:

Year:

2015

Language:

english

File:

PDF, 663 KB

english, 2015

23

Cultivation-independent comprehensive survey of bacterial diversity in Tulsi Shyam Hot Springs, India

Ghelani, Anjana, Patel, Rajesh, Mangrola, Amitsinh, Dudhagara, Pravin

Journal:

Year:

2015

Language:

english

File:

PDF, 719 KB

english, 2015

24

Transcriptional profiling of SNAI2 regulated genes in primary human keratinocytes

Mistry, Devendra S., Chen, Yifang, Wang, Ying, Sen, George L.

Journal:

Year:

2015

Language:

english

File:

PDF, 255 KB

english, 2015

25

Shotgun metagenomic sequencing based microbial diversity assessment of Lasundra hot spring, India

Mangrola, Amit V., Dudhagara, Pravin, Koringa, Prakash, Joshi, C.G., Patel, Rajesh K.

Journal:

Year:

2015

Language:

english

File:

PDF, 460 KB

english, 2015

26

Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach

Mangrola, Amitsinh, Dudhagara, Pravin, Koringa, Prakash, Joshi, C.G., Parmar, Mansi, Patel, Rajesh

Journal:

Year:

2015

Language:

english

File:

PDF, 427 KB

english, 2015

27

The genome-wide gene expression profiling to predict competitive endogenous RNA network in hepatocellular cancer

Peng, Haoran, Lu, Minqiang, Selaru, Florin M.

Journal:

Year:

2015

Language:

english

File:

PDF, 289 KB

english, 2015

28

Time course transcriptional profiling of senescing barley leaves

Zmienko, Agnieszka, Goralski, Michal, Samelak-Czajka, Anna, Sobieszczuk-Nowicka, Ewa, Figlerowicz, Marek

Journal:

Year:

2015

Language:

english

File:

PDF, 469 KB

english, 2015

29

Using shRNA experiments to validate gene regulatory networks

Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Quackenbush, John, Haibe-Kains, Benjamin

Journal:

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

30

Transcriptional profiling of UlaR-regulated genes in Streptococcus pneumoniae

Shafeeq, Sulman, Afzal, Muhammad, Henriques-Normark, Birgitta, Kuipers, Oscar P.

Journal:

Year:

2015

Language:

english

File:

PDF, 185 KB

english, 2015

31

Transcriptomic analyses of Onecut1 and Onecut2 deficient retinas

Goetz, Jillian J., Trimarchi, Jeffrey M.

Journal:

Year:

2015

Language:

english

File:

PDF, 151 KB

english, 2015

32

Contribution of nuclear actin to transcription regulation

Yamazaki, Shota, Yamamoto, Koji, Harata, Masahiko

Journal:

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

33

Transcriptome analysis of the aquaporin AtPIP1;2 deficient line in Arabidopsis thaliana

Boudichevskaia, Anastassia, Heckwolf, Marlies, Althaus, Lea, Kaldenhoff, Ralf

Journal:

Year:

2015

Language:

english

File:

PDF, 375 KB

english, 2015

34

Transcriptome analysis of basal and luminal tumor-initiating cells in ErbB2-driven breast cancer

Borcherding, Nicholas, Bormann, Nicholas, Kusner, David, Kolb, Ryan, Zhang, Weizhou

Journal:

Year:

2015

Language:

english

File:

PDF, 626 KB

english, 2015

35

Snai1 represses Nanog to promote embryonic stem cell differentiation

Galvagni, F., Neri, F.

Journal:

Year:

2015

Language:

english

File:

PDF, 233 KB

english, 2015

36

Investigations on microbial diversity of Jakrem hot spring, Meghalaya, India using cultivation-independent approach

Panda, Amrita Kumari, Bisht, Satpal Singh, Kumar, Nachimuthu Senthil, De Mandal, Surajit

Journal:

Year:

2015

Language:

english

File:

PDF, 294 KB

english, 2015

37

Gene expression profiling of loss of TET2 and/or JAK2V617F mutant hematopoietic stem cells from mouse models of myeloproliferative neoplasms

Kameda, Takuro, Shide, Kotaro, Yamaji, Takumi, Kamiunten, Ayako, Sekine, Masaaki, Hidaka, Tomonori, Kubuki, Yoko, Sashida, Goro, Aoyama, Kazumasa, Yoshimitsu, Makoto, Abe, Hiroo, Miike, Tadashi, Iwaki

Journal:

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

38

Analytical sequence to study G-CSF effect on the transcriptome of isolated spinal motoneurons from SOD1 G93A mice, an animal model for amyotrophic lateral sclerosis

Henriques, Alexandre, Kastner, Stefan, Wafzig, Oliver, Gonzalez De Aguilar, Jose-Luis, Schneider, Armin

Journal:

Year:

2015

Language:

english

File:

PDF, 591 KB

english, 2015

39

Microarray analysis of lexA gene deletion mutant of deep-sea bacterium Shewanella piezotolerans WP3 at low-temperature and high-pressure

Jian, Huahua, Wang, Fengping

Journal:

Year:

2015

Language:

english

File:

PDF, 271 KB

english, 2015

40

Gene expression profiling during intensive cardiovascular lifestyle modification: Relationships with vascular function and weight loss

Blackburn, Heather L., McErlean, Seóna, Jellema, Gera L., van Laar, Ryan, Vernalis, Marina N., Ellsworth, Darrell L.

Journal:

Year:

2015

Language:

english

File:

PDF, 464 KB

english, 2015

41

Human pluripotent stem cell-derived cardiomyocytes: Genome-wide expression profiling of long-term in vitro maturation in comparison to human heart tissue

Piccini, Ilaria, Rao, Jyoti, Seebohm, Guiscard, Greber, Boris

Journal:

Year:

2015

Language:

english

File:

PDF, 598 KB

english, 2015

42

Genome-wide gene expression profiling to investigate molecular phenotypes of Arabidopsis mutants deprived in distinct histone methyltransferases and demethylases

Zhao, Wei, Shafiq, Sarfraz, Berr, Alexandre, Shen, Wen-Hui

Journal:

Year:

2015

Language:

english

File:

PDF, 188 KB

english, 2015

43

Murine heart gene expression during acute Chagasic myocarditis

Henao-Martínez, Andrés F., Parra-Henao, Gabriel

Journal:

Year:

2015

Language:

english

File:

PDF, 152 KB

english, 2015

44

Microarray profiling of L1-overexpressing endothelial cells reveals STAT3 activation via IL-6/IL-6Rα axis

Magrini, Elena, Cavallaro, Ugo, Bianchi, Fabrizio

Journal:

Year:

2015

Language:

english

File:

PDF, 333 KB

english, 2015

45

Identification of genetic variations of a Chinese family with paramyotonia congenita via whole exome sequencing

Li, Jinxin, Huang, Qinghai, Ge, Liang, Xu, Jing, Shi, Xingjuan, Xie, Wei, Liu, Xiang, Liu, Xiangdong

Journal:

Year:

2015

Language:

english

File:

PDF, 590 KB

english, 2015

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