Volume 7; Issue 1

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BioData Mining
Volume 7; Issue 1

BioData Mining

Volume 7; Issue 1

1

The multiscale backbone of the human phenotype network based on biological pathways

Darabos, Christian, White, Marquitta J, Graham, Britney E, Leung, Derek N, Williams, Scott M, Moore, Jason H

Journal:

Year:

2014

Language:

english

File:

PDF, 3.27 MB

english, 2014

2

Mycoplasma contamination in the 1000 Genomes Project

Langdon, William B

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

3

Supervised DNA Barcodes species classification: analysis, comparisons and results

Emanuel Weitschek,Giulia Fiscon,Giovanni Felici

Journal:

Year:

2014

Language:

english

File:

PDF, 616 KB

english, 2014

4

Functional genomics annotation of a statistical epistasis network associated with bladder cancer susceptibility

Hu, Ting, Pan, Qinxin, Andrew, Angeline S, Langer, Jillian M, Cole, Michael D, Tomlinson, Craig R, Karagas, Margaret R, Moore, Jason H

Journal:

Year:

2014

Language:

english

File:

PDF, 444 KB

english, 2014

5

Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies

Mitchell, Sabrina L, Hall, Jacob B, Goodloe, Robert J, Boston, Jonathan, Farber-Eger, Eric, Pendergrass, Sarah A, Bush, William S, Crawford, Dana C

Journal:

Year:

2014

Language:

english

File:

PDF, 264 KB

english, 2014

6

Semi-supervised consensus clustering for gene expression data analysis

Wang, Yunli, Pan, Youlian

Journal:

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

7

A classification and characterization of two-locus, pure, strict, epistatic models for simulation and detection

Ryan J Urbanowicz,Ambrose LS Granizo-Mackenzie,Jeff Kiralis…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.17 MB

english, 2014

8

An adaptive permutation approach for genome-wide association study: evaluation and recommendations for use

Ronglin Che,John R Jack,Alison A Motsinger-Reif,Chad C Brown

Journal:

Year:

2014

Language:

english

File:

PDF, 409 KB

english, 2014

9

Diverse convergent evidence in the genetic analysis of complex disease: coordinating omic, informatic, and experimental evidence to better identify and validate risk factors

Timothy H Ciesielski,Sarah A Pendergrass,Marquitta J White…

Journal:

Year:

2014

Language:

english

File:

PDF, 630 KB

english, 2014

10

Hypothesis exploration with visualization of variance

Douglass Stott Parker,Eliza Congdon,Robert M Bilder

Journal:

Year:

2014

Language:

english

File:

PDF, 5.50 MB

english, 2014

11

Innovation is often unnerving: the door into summer

James D Malley,Jason H Moore

Journal:

Year:

2014

Language:

english

File:

PDF, 178 KB

english, 2014

12

First complex, then simple

James D Malley,Jason H Moore

Journal:

Year:

2014

Language:

english

File:

PDF, 180 KB

english, 2014

13

A simple structure-based model for the prediction of HIV-1 co-receptor tropism

Dominik Heider,Jan Nikolaj Dybowski,Christoph Wilms,Daniel Hoffmann

Journal:

Year:

2014

Language:

english

File:

PDF, 931 KB

english, 2014

14

Hybrid coexpression link similarity graph clustering for mining biological modules from multiple gene expression datasets

Saeed Salem,Cagri Ozcaglar

Journal:

Year:

2014

Language:

english

File:

PDF, 555 KB

english, 2014

15

Computational genetics analysis of grey matter density in Alzheimer’s disease

Amanda L Zieselman,Jonathan M Fisher,Ting Hu,Peter C Andrews…

Journal:

Year:

2014

Language:

english

File:

PDF, 315 KB

english, 2014

16

Applications of the MapReduce programming framework to clinical big data analysis: current landscape and future trends

Mohammed, Emad A, Far, Behrouz H, Naugler, Christopher

Journal:

Year:

2014

Language:

english

File:

PDF, 704 KB

english, 2014

17

Identifying genetic interactions associated with late-onset Alzheimer’s disease

Floudas, Charalampos S, Um, Nara, Kamboh, M, Barmada, Michael M, Visweswaran, Shyam

Journal:

Year:

2014

Language:

english

File:

PDF, 590 KB

english, 2014

18

Linked vaccine adverse event data from VAERS for biomedical data analysis and longitudinal studies

Tao, Cui, Wu, Puqiang, Luo, Yi, Zhang, Yuji

Journal:

Year:

2014

Language:

english

File:

PDF, 736 KB

english, 2014

19

Knowledge-driven genomic interactions: an application in ovarian cancer

Kim, Dokyoon, Li, Ruowang, Dudek, Scott M, Frase, Alex T, Pendergrass, Sarah A, Ritchie, Marylyn D

Journal:

Year:

2014

Language:

english

File:

PDF, 730 KB

english, 2014

20

Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells

Laurila, Kirsti, Autio, Reija, Kong, Lingjia, Närvä, Elisa, Hussein, Samer, Otonkoski, Timo, Lahesmaa, Riitta, Lähdesmäki, Harri

Journal:

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

21

ExpressionData - A public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions

Zimmermann, Philip, Bleuler, Stefan, Laule, Oliver, Martin, Florian, Ivanov, Nikolai V, Campanoni, Prisca, Oishi, Karen, Lugon-Moulin, Nicolas, Wyss, Markus, Hruz, Tomas, Gruissem, Wilhelm

Journal:

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

22

Erratum to: An iteration normalization and test method for differential expression analysis of RNA-seq data

Zhou, Yan, Lin, Nan, Zhang, Baoxue

Journal:

Year:

2014

Language:

english

File:

PDF, 110 KB

english, 2014

23

CardioGxE, a catalog of gene-environment interactions for cardiometabolic traits

Parnell, Laurence D, Blokker, Britt A, Dashti, Hassan S, Nesbeth, Paula-Dene, Cooper, Brittany, Ma, Yiyi, Lee, Yu-Chi, Hou, Ruixue, Lai, Chao-Qiang, Richardson, Kris, Ordovás, José M

Journal:

Year:

2014

Language:

english

File:

PDF, 424 KB

english, 2014

24

Accurate prediction of major histocompatibility complex class II epitopes by sparse representation viaℓ1-minimization

Aguilar-Bonavides, Clemente, Sanchez-Arias, Reinaldo, Lanzas, Cristina

Journal:

Year:

2014

Language:

english

File:

PDF, 914 KB

english, 2014

25

Updating microbial genomic sequences: improving accuracy & innovation

Tae, Hongseok, Karunasena, Enusha, Bavarva, Jasmin H, Garner, Harold R

Journal:

Year:

2014

Language:

english

File:

PDF, 210 KB

english, 2014

26

O brave new world that has such machines in it

Malley, James D, Malley, Karen G, Moore, Jason H

Journal:

Year:

2014

Language:

english

File:

PDF, 181 KB

english, 2014

27

Combining functional genomics strategies identifies modular heterogeneity of breast cancer intrinsic subtypes

Pouladi, Nima, Cowper-Sallari, Richard, Moore, Jason H

Journal:

Year:

2014

Language:

english

File:

PDF, 634 KB

english, 2014

28

Synthetic learning machines

Ishwaran, Hemant, Malley, James D

Journal:

Year:

2014

Language:

english

File:

PDF, 287 KB

english, 2014

29

An iteration normalization and test method for differential expression analysis of RNA-seq data

Yan Zhou,Nan Lin,Baoxue Zhang

Journal:

Year:

2014

Language:

english

File:

PDF, 281 KB

english, 2014

30

The genetic interacting landscape of 63 candidate genes in Major Depressive Disorder: an explorative study

Magnus Lekman,Ola Hössjer,Peter Andrews,Henrik Källberg,Daniel Uvehag…

Journal:

Year:

2014

Language:

english

File:

PDF, 377 KB

english, 2014

31

PGxClean: a quality control GUI for the Affymetrix DMET chip and other candidate gene studies with non-biallelic alleles

Daniel Rotroff,John Jack,Nathan Campbell,Scott Clark…

Journal:

Year:

2014

Language:

english

File:

PDF, 727 KB

english, 2014

32

Risk estimation using probability machines

Abhijit Dasgupta,Silke Szymczak,Jason H Moore,Joan E Bailey-Wilson…

Journal:

Year:

2014

Language:

english

File:

PDF, 834 KB

english, 2014